Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004433

Experiment: Shikimic Acid 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004432 and ABIE53_004433 are separated by 45 nucleotidesABIE53_004433 and ABIE53_004434 are separated by 419 nucleotides ABIE53_004432: ABIE53_004432 - glucarate dehydratase, at 622,892 to 624,241 _004432 ABIE53_004433: ABIE53_004433 - MFS family permease, at 624,287 to 625,618 _004433 ABIE53_004434: ABIE53_004434 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 626,038 to 626,757 _004434 Position (kb) 624 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 623.457 kb on + strand, within ABIE53_004432at 623.617 kb on + strand, within ABIE53_004432at 623.617 kb on + strand, within ABIE53_004432at 623.618 kb on - strand, within ABIE53_004432at 623.618 kb on - strand, within ABIE53_004432at 623.634 kb on + strand, within ABIE53_004432at 623.739 kb on + strand, within ABIE53_004432at 623.770 kb on + strand, within ABIE53_004432at 623.771 kb on - strand, within ABIE53_004432at 623.772 kb on + strand, within ABIE53_004432at 623.772 kb on + strand, within ABIE53_004432at 623.781 kb on + strand, within ABIE53_004432at 623.984 kb on - strand, within ABIE53_004432at 624.211 kb on + strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.241 kb on + strandat 624.241 kb on + strandat 624.241 kb on + strandat 624.241 kb on + strandat 624.241 kb on + strandat 624.242 kb on - strandat 624.242 kb on - strandat 624.242 kb on - strandat 624.242 kb on - strandat 624.242 kb on - strandat 624.242 kb on - strandat 624.258 kb on - strandat 624.258 kb on - strandat 624.525 kb on + strand, within ABIE53_004433at 624.525 kb on + strand, within ABIE53_004433at 624.526 kb on - strand, within ABIE53_004433at 624.526 kb on - strand, within ABIE53_004433at 624.714 kb on + strand, within ABIE53_004433at 624.715 kb on - strand, within ABIE53_004433at 624.825 kb on + strand, within ABIE53_004433at 624.850 kb on - strand, within ABIE53_004433at 625.218 kb on + strand, within ABIE53_004433at 625.219 kb on - strand, within ABIE53_004433at 625.219 kb on - strand, within ABIE53_004433at 625.278 kb on + strand, within ABIE53_004433at 625.278 kb on + strand, within ABIE53_004433at 625.278 kb on + strand, within ABIE53_004433at 625.279 kb on - strand, within ABIE53_004433at 625.279 kb on - strand, within ABIE53_004433at 625.279 kb on - strand, within ABIE53_004433at 625.279 kb on - strand, within ABIE53_004433at 625.368 kb on + strand, within ABIE53_004433at 625.369 kb on - strand, within ABIE53_004433at 625.369 kb on - strand, within ABIE53_004433at 625.369 kb on - strand, within ABIE53_004433at 625.410 kb on + strand, within ABIE53_004433at 625.411 kb on - strand, within ABIE53_004433at 625.443 kb on + strand, within ABIE53_004433at 625.443 kb on + strand, within ABIE53_004433at 625.443 kb on + strand, within ABIE53_004433at 625.443 kb on + strand, within ABIE53_004433at 625.444 kb on - strand, within ABIE53_004433at 625.444 kb on - strand, within ABIE53_004433at 625.513 kb on + strandat 625.514 kb on - strandat 625.514 kb on - strandat 625.515 kb on + strandat 625.515 kb on + strandat 625.515 kb on + strandat 625.516 kb on - strandat 625.516 kb on - strandat 625.516 kb on - strandat 625.516 kb on - strandat 625.516 kb on - strandat 625.516 kb on - strandat 625.786 kb on + strandat 625.787 kb on - strandat 625.948 kb on - strandat 625.948 kb on - strandat 625.948 kb on - strandat 625.956 kb on + strandat 625.957 kb on - strandat 625.957 kb on - strandat 626.117 kb on + strand, within ABIE53_004434at 626.446 kb on - strand, within ABIE53_004434at 626.528 kb on + strand, within ABIE53_004434at 626.528 kb on + strand, within ABIE53_004434at 626.528 kb on + strand, within ABIE53_004434at 626.528 kb on + strand, within ABIE53_004434at 626.529 kb on - strand, within ABIE53_004434

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Per-strain Table

Position Strand Gene LocusTag Fraction Shikimic Acid 5 mM (C)
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623,457 + ABIE53_004432 0.42 +0.7
623,617 + ABIE53_004432 0.54 -1.3
623,617 + ABIE53_004432 0.54 +0.7
623,618 - ABIE53_004432 0.54 -1.8
623,618 - ABIE53_004432 0.54 +0.7
623,634 + ABIE53_004432 0.55 -0.9
623,739 + ABIE53_004432 0.63 -2.6
623,770 + ABIE53_004432 0.65 -1.6
623,771 - ABIE53_004432 0.65 -0.9
623,772 + ABIE53_004432 0.65 -3.3
623,772 + ABIE53_004432 0.65 +1.7
623,781 + ABIE53_004432 0.66 -0.3
623,984 - ABIE53_004432 0.81 +1.7
624,211 + +0.7
624,212 - -2.7
624,212 - +0.5
624,241 + -1.7
624,241 + -0.3
624,241 + +0.9
624,241 + +0.7
624,241 + -0.7
624,242 - +1.7
624,242 - -0.9
624,242 - +0.6
624,242 - +0.2
624,242 - +3.3
624,242 - -0.5
624,258 - +0.7
624,258 - -2.0
624,525 + ABIE53_004433 0.18 +1.3
624,525 + ABIE53_004433 0.18 -1.5
624,526 - ABIE53_004433 0.18 -0.5
624,526 - ABIE53_004433 0.18 +0.1
624,714 + ABIE53_004433 0.32 -0.2
624,715 - ABIE53_004433 0.32 -1.5
624,825 + ABIE53_004433 0.40 -0.1
624,850 - ABIE53_004433 0.42 +2.0
625,218 + ABIE53_004433 0.70 -0.9
625,219 - ABIE53_004433 0.70 -1.6
625,219 - ABIE53_004433 0.70 -0.3
625,278 + ABIE53_004433 0.74 -0.3
625,278 + ABIE53_004433 0.74 +1.0
625,278 + ABIE53_004433 0.74 +0.9
625,279 - ABIE53_004433 0.74 +3.0
625,279 - ABIE53_004433 0.74 +0.7
625,279 - ABIE53_004433 0.74 -1.1
625,279 - ABIE53_004433 0.74 -0.1
625,368 + ABIE53_004433 0.81 -0.3
625,369 - ABIE53_004433 0.81 +1.3
625,369 - ABIE53_004433 0.81 +0.7
625,369 - ABIE53_004433 0.81 +3.0
625,410 + ABIE53_004433 0.84 +0.7
625,411 - ABIE53_004433 0.84 -2.0
625,443 + ABIE53_004433 0.87 +0.1
625,443 + ABIE53_004433 0.87 -0.3
625,443 + ABIE53_004433 0.87 +0.1
625,443 + ABIE53_004433 0.87 -0.8
625,444 - ABIE53_004433 0.87 +1.3
625,444 - ABIE53_004433 0.87 -1.5
625,513 + -1.4
625,514 - +1.4
625,514 - -0.8
625,515 + +2.1
625,515 + -3.7
625,515 + -1.1
625,516 - +0.3
625,516 - -0.9
625,516 - +0.7
625,516 - -0.5
625,516 - -0.4
625,516 - -2.1
625,786 + -0.3
625,787 - +1.1
625,948 - -0.3
625,948 - -2.3
625,948 - +0.3
625,956 + -1.5
625,957 - +1.4
625,957 - -1.6
626,117 + ABIE53_004434 0.11 +0.7
626,446 - ABIE53_004434 0.57 +0.7
626,528 + ABIE53_004434 0.68 -1.3
626,528 + ABIE53_004434 0.68 -0.5
626,528 + ABIE53_004434 0.68 -0.7
626,528 + ABIE53_004434 0.68 -0.1
626,529 - ABIE53_004434 0.68 -0.3

Or see this region's nucleotide sequence