Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002298

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
2,579,568	+		ABIE53_002295	0.88	+1.0
2,579,568	+		ABIE53_002295	0.88	+1.0
2,579,599	+		ABIE53_002295	0.89	+0.1
2,579,638	+				+0.6
2,579,638	+				+2.0
2,579,639	-				+2.0
2,579,639	-				-0.5
2,579,639	-				+1.5
2,579,639	-				+0.6
2,579,639	-				-1.9
2,579,717	-				+4.0
2,579,855	+				-1.7
2,579,855	+				+1.6
2,579,855	+				+1.6
2,579,856	-				+2.0
2,579,861	+				-1.3
2,579,861	+				+0.0
2,579,861	+				+3.0
2,579,861	+				-1.1
2,579,861	+				-0.7
2,579,861	+				+1.6
2,579,861	+				+1.0
2,579,861	+				+1.0
2,579,861	+				+1.5
2,579,862	-				-2.4
2,579,862	-				+0.2
2,579,862	-				+0.0
2,579,862	-				+0.0
2,579,862	-				-0.5
2,579,862	-				+0.0
2,579,862	-				+1.0
2,579,862	-				+2.6
2,579,862	-				-1.9
2,579,862	-				-2.4
2,579,863	+				-1.1
2,579,863	+				+0.0
2,579,863	+				+0.5
2,579,863	+				+0.0
2,579,864	-				+0.0
2,579,864	-				-0.5
2,579,954	+		ABIE53_002296	0.38	-0.5
2,579,955	-		ABIE53_002296	0.39	-1.3
2,579,955	-		ABIE53_002296	0.39	-1.1
2,580,015	+		ABIE53_002296	0.68	+1.0
2,580,015	+		ABIE53_002296	0.68	+0.3
2,580,015	+		ABIE53_002296	0.68	+2.0
2,580,015	+		ABIE53_002296	0.68	+1.0
2,580,016	-		ABIE53_002296	0.68	-1.1
2,580,079	+				+1.6
2,580,079	+				+1.0
2,580,080	-				-1.5
2,580,080	-				-2.1
2,580,141	+				-0.7
2,580,177	+				-0.7
2,580,271	+		ABIE53_002297	0.24	-1.3
2,580,271	+		ABIE53_002297	0.24	+1.0
2,580,271	+		ABIE53_002297	0.24	-0.6
2,580,271	+		ABIE53_002297	0.24	+1.8
2,580,271	+		ABIE53_002297	0.24	+1.8
2,580,271	+		ABIE53_002297	0.24	-1.1
2,580,272	-		ABIE53_002297	0.25	+1.0
2,580,272	-		ABIE53_002297	0.25	+2.0
2,580,272	-		ABIE53_002297	0.25	-0.6
2,580,272	-		ABIE53_002297	0.25	+1.0
2,580,346	+		ABIE53_002297	0.74	+0.2
2,580,355	-		ABIE53_002297	0.80	+1.0
2,580,383	-				-1.6
2,580,393	+				-2.0
2,580,394	-				-2.1
2,580,415	+				+0.0
2,580,416	-				+1.0
2,580,416	-				-0.1
2,580,416	-				-1.6
2,580,733	-				-0.1
2,580,734	+				+0.2
2,580,744	-				-0.6
2,580,763	+				+2.0
2,580,765	+				+1.6
2,580,765	+				+1.0
2,580,766	-				-0.6
2,580,797	-				-0.6
2,580,797	-				+1.4
2,580,882	+				+1.6
2,580,882	+				+0.4
2,580,882	+				-3.0
2,580,882	+				+0.4
2,580,883	-				+0.3
2,580,883	-				-0.6
2,580,883	-				+0.3
2,580,900	+				+0.2
2,580,900	+				-0.7
2,580,911	+				+0.0
2,580,911	+				+1.0
2,580,911	+				-0.6
2,580,911	+				-0.2
2,580,911	+				+1.0
2,580,912	-				+1.0
2,580,912	-				-1.0
2,580,912	-				-0.7
2,580,912	-				+0.2
2,581,109	+		ABIE53_002299	0.11	+0.4
2,581,109	+		ABIE53_002299	0.11	-0.2
2,581,109	+		ABIE53_002299	0.11	-1.2
2,581,109	+		ABIE53_002299	0.11	+1.6
2,581,109	+		ABIE53_002299	0.11	-1.5
2,581,109	+		ABIE53_002299	0.11	+0.3
2,581,110	-		ABIE53_002299	0.11	-1.1
2,581,110	-		ABIE53_002299	0.11	-0.5
2,581,110	-		ABIE53_002299	0.11	-1.0
2,581,110	-		ABIE53_002299	0.11	+0.4
2,581,110	-		ABIE53_002299	0.11	-0.6
2,581,361	+		ABIE53_002299	0.29	-1.0
2,581,361	+		ABIE53_002299	0.29	+0.3
2,581,362	-		ABIE53_002299	0.29	+0.5
2,581,362	-		ABIE53_002299	0.29	+0.0
2,581,427	+		ABIE53_002299	0.34	+0.3
2,581,427	+		ABIE53_002299	0.34	+0.0
2,581,427	+		ABIE53_002299	0.34	+0.0
2,581,428	-		ABIE53_002299	0.34	-1.8
2,581,428	-		ABIE53_002299	0.34	-1.6
2,581,428	-		ABIE53_002299	0.34	-2.1
2,581,428	-		ABIE53_002299	0.34	-0.6
2,581,453	+		ABIE53_002299	0.36	-0.6
2,581,484	+		ABIE53_002299	0.38	+1.0
2,581,484	+		ABIE53_002299	0.38	+0.6
2,581,484	+		ABIE53_002299	0.38	-1.4
2,581,484	+		ABIE53_002299	0.38	-1.8
2,581,484	+		ABIE53_002299	0.38	-1.3
2,581,484	+		ABIE53_002299	0.38	+1.0
2,581,484	+		ABIE53_002299	0.38	+2.8
2,581,484	+		ABIE53_002299	0.38	-0.5
2,581,484	+		ABIE53_002299	0.38	-1.2
2,581,485	-		ABIE53_002299	0.38	+2.0
2,581,485	-		ABIE53_002299	0.38	+2.3
2,581,485	-		ABIE53_002299	0.38	-0.4
2,581,485	-		ABIE53_002299	0.38	-1.6
2,581,485	-		ABIE53_002299	0.38	+2.0
2,581,485	-		ABIE53_002299	0.38	-0.6
2,581,485	-		ABIE53_002299	0.38	-2.3
2,581,485	-		ABIE53_002299	0.38	-0.9
2,581,485	-		ABIE53_002299	0.38	-3.9
2,581,485	-		ABIE53_002299	0.38	-1.0
2,581,485	-		ABIE53_002299	0.38	+0.8
2,581,673	+		ABIE53_002299	0.52	-1.0
2,581,673	+		ABIE53_002299	0.52	-0.9
2,581,673	+		ABIE53_002299	0.52	+0.2
2,581,674	-		ABIE53_002299	0.52	-2.7
2,581,674	-		ABIE53_002299	0.52	-0.3
2,581,674	-		ABIE53_002299	0.52	-0.9
2,581,674	-		ABIE53_002299	0.52	-2.7
2,581,674	-		ABIE53_002299	0.52	+1.0
2,581,683	-		ABIE53_002299	0.52	+1.0
2,581,683	-		ABIE53_002299	0.52	-1.3
2,581,683	-		ABIE53_002299	0.52	-0.1