Experiment: MoLS4 with L-Asparagine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1760 and DVU1762 are separated by 248 nucleotides DVU1762 and DVU1764 are separated by 793 nucleotides
DVU1760: DVU1760 - transcriptional regulator, TetR family (TIGR), at 1,824,953 to 1,825,537
DVU1760
DVU1762: DVU1762 - membrane protein, putative (TIGR), at 1,825,786 to 1,826,244
DVU1762
DVU1764: DVU1764 - conserved hypothetical protein (TIGR), at 1,827,038 to 1,827,307
DVU1764
Position (kb)
1825
1826
1827 Strain fitness (log2 ratio)
-1
0
1 at 1824.922 kb on - strand at 1824.987 kb on + strand at 1825.017 kb on + strand, within DVU1760 at 1825.017 kb on + strand, within DVU1760 at 1825.321 kb on + strand, within DVU1760 at 1825.475 kb on - strand, within DVU1760 at 1825.760 kb on + strand at 1825.845 kb on - strand, within DVU1762 at 1825.902 kb on + strand, within DVU1762 at 1825.951 kb on + strand, within DVU1762 at 1825.959 kb on - strand, within DVU1762 at 1825.959 kb on - strand, within DVU1762 at 1826.132 kb on - strand, within DVU1762 at 1826.396 kb on - strand at 1826.420 kb on + strand at 1826.420 kb on + strand at 1826.428 kb on - strand at 1826.442 kb on + strand at 1826.450 kb on - strand at 1826.451 kb on - strand at 1826.451 kb on - strand at 1826.451 kb on - strand at 1826.504 kb on - strand at 1826.672 kb on - strand at 1826.730 kb on + strand at 1826.730 kb on + strand at 1826.814 kb on + strand at 1826.814 kb on + strand at 1826.814 kb on + strand at 1826.814 kb on + strand at 1826.822 kb on - strand at 1826.859 kb on + strand at 1826.867 kb on - strand at 1826.889 kb on - strand at 1826.926 kb on + strand at 1826.950 kb on - strand at 1826.973 kb on - strand at 1826.978 kb on - strand at 1827.014 kb on + strand at 1827.022 kb on - strand at 1827.060 kb on - strand at 1827.097 kb on + strand, within DVU1764 at 1827.156 kb on + strand, within DVU1764 at 1827.164 kb on - strand, within DVU1764
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Asparagine as nutrient 10mM remove 1,824,922 - -0.1 1,824,987 + -0.8 1,825,017 + DVU1760 0.11 -1.3 1,825,017 + DVU1760 0.11 -0.9 1,825,321 + DVU1760 0.63 -0.8 1,825,475 - DVU1760 0.89 -0.1 1,825,760 + -0.3 1,825,845 - DVU1762 0.13 -0.2 1,825,902 + DVU1762 0.25 +0.1 1,825,951 + DVU1762 0.36 +1.7 1,825,959 - DVU1762 0.38 -1.6 1,825,959 - DVU1762 0.38 -0.2 1,826,132 - DVU1762 0.75 -0.5 1,826,396 - +1.1 1,826,420 + +0.7 1,826,420 + -0.7 1,826,428 - +0.6 1,826,442 + +1.5 1,826,450 - -0.4 1,826,451 - +0.4 1,826,451 - +0.7 1,826,451 - +0.1 1,826,504 - -0.6 1,826,672 - +0.1 1,826,730 + +0.6 1,826,730 + +0.1 1,826,814 + +1.2 1,826,814 + +0.3 1,826,814 + -0.9 1,826,814 + -0.0 1,826,822 - +0.5 1,826,859 + -0.7 1,826,867 - -0.8 1,826,889 - +0.2 1,826,926 + -1.1 1,826,950 - +0.0 1,826,973 - -0.2 1,826,978 - -0.5 1,827,014 + +0.1 1,827,022 - -1.2 1,827,060 - -0.9 1,827,097 + DVU1764 0.22 -0.2 1,827,156 + DVU1764 0.44 +0.5 1,827,164 - DVU1764 0.47 -0.6
Or see this region's nucleotide sequence