Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11635

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11630 and BBR_RS11635 are separated by 165 nucleotidesBBR_RS11635 and BBR_RS11640 are separated by 15 nucleotidesBBR_RS11640 and BBR_RS11645 are separated by 46 nucleotidesBBR_RS11645 and BBR_RS11650 are separated by 33 nucleotides BBR_RS11630: BBR_RS11630 - MFS transporter, at 365,435 to 366,640 _RS11630 BBR_RS11635: BBR_RS11635 - hypothetical protein, at 366,806 to 367,117 _RS11635 BBR_RS11640: BBR_RS11640 - hypothetical protein, at 367,133 to 367,498 _RS11640 BBR_RS11645: BBR_RS11645 - integrase, at 367,545 to 367,706 _RS11645 BBR_RS11650: BBR_RS11650 - integrase, at 367,740 to 368,417 _RS11650 Position (kb) 366 367 368Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 365.832 kb on - strand, within BBR_RS11630at 365.842 kb on + strand, within BBR_RS11630at 365.868 kb on + strand, within BBR_RS11630at 365.871 kb on - strand, within BBR_RS11630at 365.900 kb on + strand, within BBR_RS11630at 365.908 kb on - strand, within BBR_RS11630at 365.914 kb on + strand, within BBR_RS11630at 365.920 kb on - strand, within BBR_RS11630at 365.945 kb on + strand, within BBR_RS11630at 365.950 kb on + strand, within BBR_RS11630at 365.969 kb on + strand, within BBR_RS11630at 365.993 kb on + strand, within BBR_RS11630at 366.035 kb on - strand, within BBR_RS11630at 366.035 kb on - strand, within BBR_RS11630at 366.035 kb on - strand, within BBR_RS11630at 366.040 kb on + strand, within BBR_RS11630at 366.121 kb on - strand, within BBR_RS11630at 366.121 kb on - strand, within BBR_RS11630at 366.164 kb on + strand, within BBR_RS11630at 366.164 kb on + strand, within BBR_RS11630at 366.170 kb on + strand, within BBR_RS11630at 366.170 kb on + strand, within BBR_RS11630at 366.170 kb on + strand, within BBR_RS11630at 366.170 kb on + strand, within BBR_RS11630at 366.170 kb on + strand, within BBR_RS11630at 366.170 kb on + strand, within BBR_RS11630at 366.170 kb on + strand, within BBR_RS11630at 366.170 kb on - strand, within BBR_RS11630at 366.170 kb on - strand, within BBR_RS11630at 366.172 kb on - strand, within BBR_RS11630at 366.172 kb on - strand, within BBR_RS11630at 366.172 kb on - strand, within BBR_RS11630at 366.172 kb on - strand, within BBR_RS11630at 366.178 kb on - strand, within BBR_RS11630at 366.178 kb on - strand, within BBR_RS11630at 366.202 kb on + strand, within BBR_RS11630at 366.224 kb on - strand, within BBR_RS11630at 366.241 kb on + strand, within BBR_RS11630at 366.244 kb on + strand, within BBR_RS11630at 366.246 kb on + strand, within BBR_RS11630at 366.246 kb on + strand, within BBR_RS11630at 366.254 kb on - strand, within BBR_RS11630at 366.254 kb on - strand, within BBR_RS11630at 366.301 kb on + strand, within BBR_RS11630at 366.301 kb on + strand, within BBR_RS11630at 366.309 kb on - strand, within BBR_RS11630at 366.309 kb on - strand, within BBR_RS11630at 366.309 kb on - strand, within BBR_RS11630at 366.319 kb on - strand, within BBR_RS11630at 366.319 kb on - strand, within BBR_RS11630at 366.328 kb on + strand, within BBR_RS11630at 366.328 kb on + strand, within BBR_RS11630at 366.336 kb on - strand, within BBR_RS11630at 366.369 kb on + strand, within BBR_RS11630at 366.377 kb on - strand, within BBR_RS11630at 366.396 kb on + strand, within BBR_RS11630at 366.400 kb on + strand, within BBR_RS11630at 366.403 kb on - strand, within BBR_RS11630at 366.420 kb on - strand, within BBR_RS11630at 366.420 kb on - strand, within BBR_RS11630at 366.420 kb on - strand, within BBR_RS11630at 366.420 kb on - strand, within BBR_RS11630at 366.420 kb on - strand, within BBR_RS11630at 366.425 kb on - strand, within BBR_RS11630at 366.445 kb on + strand, within BBR_RS11630at 366.453 kb on - strand, within BBR_RS11630at 366.457 kb on + strand, within BBR_RS11630at 366.465 kb on - strand, within BBR_RS11630at 366.514 kb on + strand, within BBR_RS11630at 366.514 kb on + strand, within BBR_RS11630at 366.520 kb on - strandat 366.520 kb on - strandat 366.553 kb on + strandat 366.575 kb on + strandat 366.609 kb on - strandat 366.656 kb on + strandat 366.662 kb on - strandat 366.665 kb on + strandat 366.672 kb on - strandat 366.682 kb on - strandat 366.686 kb on + strandat 366.689 kb on + strandat 366.707 kb on - strandat 366.717 kb on + strandat 366.733 kb on + strandat 366.743 kb on - strandat 366.751 kb on + strandat 366.751 kb on + strandat 366.864 kb on + strand, within BBR_RS11635at 366.872 kb on - strand, within BBR_RS11635at 366.891 kb on - strand, within BBR_RS11635at 366.897 kb on - strand, within BBR_RS11635at 366.916 kb on - strand, within BBR_RS11635at 366.919 kb on + strand, within BBR_RS11635at 366.928 kb on + strand, within BBR_RS11635at 366.942 kb on - strand, within BBR_RS11635at 366.958 kb on + strand, within BBR_RS11635at 366.963 kb on + strand, within BBR_RS11635at 366.963 kb on + strand, within BBR_RS11635at 366.965 kb on + strand, within BBR_RS11635at 366.966 kb on - strand, within BBR_RS11635at 366.990 kb on - strand, within BBR_RS11635at 366.997 kb on - strand, within BBR_RS11635at 367.009 kb on - strand, within BBR_RS11635at 367.027 kb on + strand, within BBR_RS11635at 367.035 kb on + strand, within BBR_RS11635at 367.035 kb on + strand, within BBR_RS11635at 367.043 kb on - strand, within BBR_RS11635at 367.044 kb on + strand, within BBR_RS11635at 367.056 kb on - strand, within BBR_RS11635at 367.064 kb on + strand, within BBR_RS11635at 367.296 kb on - strand, within BBR_RS11640at 367.353 kb on + strand, within BBR_RS11640at 367.431 kb on + strand, within BBR_RS11640at 367.444 kb on + strand, within BBR_RS11640at 367.476 kb on - strandat 367.493 kb on + strandat 367.515 kb on - strandat 367.515 kb on - strandat 367.546 kb on - strandat 367.546 kb on - strandat 367.556 kb on - strandat 367.556 kb on - strandat 367.569 kb on + strand, within BBR_RS11645at 367.574 kb on + strand, within BBR_RS11645at 367.574 kb on + strand, within BBR_RS11645at 367.578 kb on + strand, within BBR_RS11645at 367.582 kb on - strand, within BBR_RS11645at 367.584 kb on - strand, within BBR_RS11645at 367.601 kb on + strand, within BBR_RS11645at 367.621 kb on - strand, within BBR_RS11645at 367.628 kb on - strand, within BBR_RS11645at 367.647 kb on + strand, within BBR_RS11645at 367.654 kb on + strand, within BBR_RS11645at 367.672 kb on + strand, within BBR_RS11645at 367.695 kb on + strandat 367.702 kb on - strandat 367.704 kb on + strandat 367.716 kb on - strandat 367.755 kb on - strandat 367.770 kb on + strandat 367.773 kb on - strandat 367.778 kb on - strandat 367.780 kb on + strandat 367.788 kb on - strandat 367.800 kb on - strandat 367.836 kb on + strand, within BBR_RS11650at 367.836 kb on + strand, within BBR_RS11650at 367.836 kb on - strand, within BBR_RS11650at 367.849 kb on + strand, within BBR_RS11650at 367.888 kb on + strand, within BBR_RS11650at 367.888 kb on + strand, within BBR_RS11650at 367.896 kb on - strand, within BBR_RS11650at 367.946 kb on + strand, within BBR_RS11650at 367.946 kb on + strand, within BBR_RS11650at 367.946 kb on + strand, within BBR_RS11650at 367.980 kb on + strand, within BBR_RS11650at 367.981 kb on - strand, within BBR_RS11650at 367.986 kb on - strand, within BBR_RS11650at 367.988 kb on - strand, within BBR_RS11650at 368.011 kb on - strand, within BBR_RS11650at 368.018 kb on - strand, within BBR_RS11650at 368.020 kb on + strand, within BBR_RS11650at 368.035 kb on + strand, within BBR_RS11650at 368.046 kb on + strand, within BBR_RS11650at 368.046 kb on + strand, within BBR_RS11650at 368.061 kb on + strand, within BBR_RS11650at 368.061 kb on + strand, within BBR_RS11650at 368.061 kb on + strand, within BBR_RS11650at 368.065 kb on + strand, within BBR_RS11650at 368.086 kb on + strand, within BBR_RS11650

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day1
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365,832 - BBR_RS11630 0.33 +0.1
365,842 + BBR_RS11630 0.34 -0.2
365,868 + BBR_RS11630 0.36 +0.5
365,871 - BBR_RS11630 0.36 +0.1
365,900 + BBR_RS11630 0.39 -0.5
365,908 - BBR_RS11630 0.39 -0.1
365,914 + BBR_RS11630 0.40 +1.3
365,920 - BBR_RS11630 0.40 +0.7
365,945 + BBR_RS11630 0.42 +0.1
365,950 + BBR_RS11630 0.43 -1.5
365,969 + BBR_RS11630 0.44 +0.8
365,993 + BBR_RS11630 0.46 +0.7
366,035 - BBR_RS11630 0.50 -0.1
366,035 - BBR_RS11630 0.50 -0.1
366,035 - BBR_RS11630 0.50 -0.6
366,040 + BBR_RS11630 0.50 -0.3
366,121 - BBR_RS11630 0.57 -0.8
366,121 - BBR_RS11630 0.57 +0.2
366,164 + BBR_RS11630 0.60 -1.5
366,164 + BBR_RS11630 0.60 -0.2
366,170 + BBR_RS11630 0.61 +0.1
366,170 + BBR_RS11630 0.61 -0.6
366,170 + BBR_RS11630 0.61 -1.8
366,170 + BBR_RS11630 0.61 -2.8
366,170 + BBR_RS11630 0.61 +0.8
366,170 + BBR_RS11630 0.61 -1.8
366,170 + BBR_RS11630 0.61 -1.1
366,170 - BBR_RS11630 0.61 -0.9
366,170 - BBR_RS11630 0.61 -0.9
366,172 - BBR_RS11630 0.61 +0.1
366,172 - BBR_RS11630 0.61 -0.3
366,172 - BBR_RS11630 0.61 +1.6
366,172 - BBR_RS11630 0.61 -0.8
366,178 - BBR_RS11630 0.62 -0.6
366,178 - BBR_RS11630 0.62 +0.2
366,202 + BBR_RS11630 0.64 -0.1
366,224 - BBR_RS11630 0.65 +1.6
366,241 + BBR_RS11630 0.67 +0.2
366,244 + BBR_RS11630 0.67 +0.5
366,246 + BBR_RS11630 0.67 +1.6
366,246 + BBR_RS11630 0.67 -0.3
366,254 - BBR_RS11630 0.68 +1.4
366,254 - BBR_RS11630 0.68 +0.4
366,301 + BBR_RS11630 0.72 -0.7
366,301 + BBR_RS11630 0.72 +0.1
366,309 - BBR_RS11630 0.72 +0.4
366,309 - BBR_RS11630 0.72 +0.5
366,309 - BBR_RS11630 0.72 -1.1
366,319 - BBR_RS11630 0.73 +0.2
366,319 - BBR_RS11630 0.73 +0.5
366,328 + BBR_RS11630 0.74 +0.5
366,328 + BBR_RS11630 0.74 -0.5
366,336 - BBR_RS11630 0.75 +0.4
366,369 + BBR_RS11630 0.77 -0.8
366,377 - BBR_RS11630 0.78 +0.1
366,396 + BBR_RS11630 0.80 +0.1
366,400 + BBR_RS11630 0.80 +1.2
366,403 - BBR_RS11630 0.80 -1.1
366,420 - BBR_RS11630 0.82 +0.3
366,420 - BBR_RS11630 0.82 -0.6
366,420 - BBR_RS11630 0.82 +0.4
366,420 - BBR_RS11630 0.82 -0.5
366,420 - BBR_RS11630 0.82 -0.3
366,425 - BBR_RS11630 0.82 +1.0
366,445 + BBR_RS11630 0.84 +0.2
366,453 - BBR_RS11630 0.84 +1.0
366,457 + BBR_RS11630 0.85 +0.7
366,465 - BBR_RS11630 0.85 -0.4
366,514 + BBR_RS11630 0.89 -1.2
366,514 + BBR_RS11630 0.89 +1.1
366,520 - -0.1
366,520 - +0.5
366,553 + -0.3
366,575 + -1.2
366,609 - -0.9
366,656 + +0.3
366,662 - +0.2
366,665 + -0.1
366,672 - -0.3
366,682 - -0.2
366,686 + +0.3
366,689 + -1.0
366,707 - +0.2
366,717 + -0.7
366,733 + +0.3
366,743 - -0.9
366,751 + -0.2
366,751 + -1.0
366,864 + BBR_RS11635 0.19 +0.4
366,872 - BBR_RS11635 0.21 -0.7
366,891 - BBR_RS11635 0.27 -0.2
366,897 - BBR_RS11635 0.29 -0.3
366,916 - BBR_RS11635 0.35 -0.6
366,919 + BBR_RS11635 0.36 +0.4
366,928 + BBR_RS11635 0.39 +1.2
366,942 - BBR_RS11635 0.44 -1.1
366,958 + BBR_RS11635 0.49 +0.3
366,963 + BBR_RS11635 0.50 +0.4
366,963 + BBR_RS11635 0.50 +0.2
366,965 + BBR_RS11635 0.51 -0.9
366,966 - BBR_RS11635 0.51 -1.5
366,990 - BBR_RS11635 0.59 +2.4
366,997 - BBR_RS11635 0.61 -1.3
367,009 - BBR_RS11635 0.65 -1.0
367,027 + BBR_RS11635 0.71 +0.7
367,035 + BBR_RS11635 0.73 +0.4
367,035 + BBR_RS11635 0.73 +0.3
367,043 - BBR_RS11635 0.76 -2.3
367,044 + BBR_RS11635 0.76 -1.7
367,056 - BBR_RS11635 0.80 +0.6
367,064 + BBR_RS11635 0.83 +0.2
367,296 - BBR_RS11640 0.45 -0.9
367,353 + BBR_RS11640 0.60 -0.0
367,431 + BBR_RS11640 0.81 +0.6
367,444 + BBR_RS11640 0.85 +2.4
367,476 - -1.8
367,493 + -1.1
367,515 - +0.5
367,515 - -0.6
367,546 - -0.4
367,546 - +0.4
367,556 - -0.0
367,556 - +0.4
367,569 + BBR_RS11645 0.15 +1.1
367,574 + BBR_RS11645 0.18 +1.2
367,574 + BBR_RS11645 0.18 -0.0
367,578 + BBR_RS11645 0.20 -1.1
367,582 - BBR_RS11645 0.23 -0.1
367,584 - BBR_RS11645 0.24 -1.2
367,601 + BBR_RS11645 0.35 -1.3
367,621 - BBR_RS11645 0.47 +1.5
367,628 - BBR_RS11645 0.51 +0.8
367,647 + BBR_RS11645 0.63 +0.1
367,654 + BBR_RS11645 0.67 +0.7
367,672 + BBR_RS11645 0.78 +0.8
367,695 + +0.3
367,702 - +1.5
367,704 + -1.5
367,716 - +1.1
367,755 - +0.1
367,770 + +0.2
367,773 - -0.0
367,778 - +0.6
367,780 + -1.1
367,788 - +0.5
367,800 - -1.8
367,836 + BBR_RS11650 0.14 -0.0
367,836 + BBR_RS11650 0.14 -0.5
367,836 - BBR_RS11650 0.14 -0.6
367,849 + BBR_RS11650 0.16 +0.9
367,888 + BBR_RS11650 0.22 +0.1
367,888 + BBR_RS11650 0.22 +0.2
367,896 - BBR_RS11650 0.23 +0.1
367,946 + BBR_RS11650 0.30 +0.8
367,946 + BBR_RS11650 0.30 -0.5
367,946 + BBR_RS11650 0.30 +0.1
367,980 + BBR_RS11650 0.35 +0.1
367,981 - BBR_RS11650 0.36 -0.9
367,986 - BBR_RS11650 0.36 -1.0
367,988 - BBR_RS11650 0.37 +0.7
368,011 - BBR_RS11650 0.40 +0.6
368,018 - BBR_RS11650 0.41 -1.5
368,020 + BBR_RS11650 0.41 -0.3
368,035 + BBR_RS11650 0.44 +0.0
368,046 + BBR_RS11650 0.45 -0.9
368,046 + BBR_RS11650 0.45 +0.4
368,061 + BBR_RS11650 0.47 +1.1
368,061 + BBR_RS11650 0.47 -1.7
368,061 + BBR_RS11650 0.47 -1.2
368,065 + BBR_RS11650 0.48 +0.2
368,086 + BBR_RS11650 0.51 +1.0

Or see this region's nucleotide sequence