Experiment: Grazed flask 4 outgrowth 150uE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metS and lalA are separated by 78 nucleotides lalA and Synpcc7942_1144 are separated by 222 nucleotides
Synpcc7942_1142: metS - methionyl-tRNA synthetase, at 1,166,949 to 1,168,526
metS
Synpcc7942_1143: lalA - hypothetical protein, at 1,168,605 to 1,169,201
lalA
Synpcc7942_1144: Synpcc7942_1144 - hypothetical protein, at 1,169,424 to 1,170,455
_1144
Position (kb) 1168
1169
1170 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1168.529 kb on - strand at 1168.641 kb on - strand at 1168.652 kb on - strand at 1168.690 kb on + strand, within lalA at 1168.698 kb on - strand, within lalA at 1168.708 kb on - strand, within lalA at 1168.710 kb on + strand, within lalA at 1168.710 kb on + strand, within lalA at 1168.814 kb on - strand, within lalA at 1168.943 kb on - strand, within lalA at 1168.974 kb on + strand, within lalA at 1168.974 kb on + strand, within lalA at 1168.995 kb on + strand, within lalA at 1168.995 kb on + strand, within lalA at 1169.024 kb on - strand, within lalA at 1169.039 kb on + strand, within lalA at 1169.084 kb on - strand, within lalA at 1169.124 kb on - strand, within lalA at 1169.138 kb on + strand, within lalA at 1169.146 kb on - strand at 1169.150 kb on + strand at 1169.158 kb on - strand at 1169.158 kb on - strand at 1169.175 kb on + strand at 1169.183 kb on + strand at 1169.185 kb on + strand at 1169.185 kb on + strand at 1169.185 kb on + strand at 1169.185 kb on + strand at 1169.193 kb on - strand at 1169.193 kb on - strand at 1169.193 kb on - strand at 1169.193 kb on - strand at 1169.193 kb on - strand at 1169.193 kb on - strand at 1169.206 kb on + strand at 1169.216 kb on - strand at 1169.224 kb on - strand at 1169.230 kb on - strand at 1169.250 kb on + strand at 1169.258 kb on - strand at 1169.265 kb on + strand at 1169.268 kb on - strand at 1169.275 kb on - strand at 1169.290 kb on - strand at 1169.342 kb on - strand at 1169.343 kb on + strand at 1169.351 kb on - strand at 1169.351 kb on - strand at 1169.371 kb on + strand at 1169.385 kb on - strand at 1169.400 kb on - strand at 1169.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Grazed flask 4 outgrowth 150uE remove 1,168,529 - -1.1 1,168,641 - -0.8 1,168,652 - -2.3 1,168,690 + lalA Synpcc7942_1143 0.14 +0.3 1,168,698 - lalA Synpcc7942_1143 0.16 -1.0 1,168,708 - lalA Synpcc7942_1143 0.17 -1.0 1,168,710 + lalA Synpcc7942_1143 0.18 -0.9 1,168,710 + lalA Synpcc7942_1143 0.18 -0.6 1,168,814 - lalA Synpcc7942_1143 0.35 +0.6 1,168,943 - lalA Synpcc7942_1143 0.57 -1.6 1,168,974 + lalA Synpcc7942_1143 0.62 -1.2 1,168,974 + lalA Synpcc7942_1143 0.62 -1.4 1,168,995 + lalA Synpcc7942_1143 0.65 -1.1 1,168,995 + lalA Synpcc7942_1143 0.65 -1.6 1,169,024 - lalA Synpcc7942_1143 0.70 -1.1 1,169,039 + lalA Synpcc7942_1143 0.73 -2.5 1,169,084 - lalA Synpcc7942_1143 0.80 -3.7 1,169,124 - lalA Synpcc7942_1143 0.87 -1.1 1,169,138 + lalA Synpcc7942_1143 0.89 -2.4 1,169,146 - -0.5 1,169,150 + -0.3 1,169,158 - -0.8 1,169,158 - -1.6 1,169,175 + -0.4 1,169,183 + -1.2 1,169,185 + -1.6 1,169,185 + -1.6 1,169,185 + -1.6 1,169,185 + -3.6 1,169,193 - -2.9 1,169,193 - -0.7 1,169,193 - -2.1 1,169,193 - -1.1 1,169,193 - -2.1 1,169,193 - -0.4 1,169,206 + -1.4 1,169,216 - -0.4 1,169,224 - -0.2 1,169,230 - +0.2 1,169,250 + -0.0 1,169,258 - -0.1 1,169,265 + +1.0 1,169,268 - -1.9 1,169,275 - +0.2 1,169,290 - +1.0 1,169,342 - +0.7 1,169,343 + -0.3 1,169,351 - -1.3 1,169,351 - -0.9 1,169,371 + -1.3 1,169,385 - +0.8 1,169,400 - -0.0 1,169,412 - +0.6
Or see this region's nucleotide sequence