Experiment: Grazed flask 4 outgrowth 150uE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0698 and psbM are separated by 99 nucleotides psbM and Synpcc7942_0700 are separated by 97 nucleotides Synpcc7942_0700 and Synpcc7942_0701 are separated by 54 nucleotides Synpcc7942_0701 and Synpcc7942_0702 overlap by 4 nucleotides
Synpcc7942_0698: Synpcc7942_0698 - probable ferredoxin, at 691,085 to 691,519
_0698
Synpcc7942_0699: psbM - photosystem II reaction center protein PsbM, at 691,619 to 691,726
psbM
Synpcc7942_0700: Synpcc7942_0700 - hypothetical protein, at 691,824 to 692,744
_0700
Synpcc7942_0701: Synpcc7942_0701 - hypothetical protein, at 692,799 to 693,260
_0701
Synpcc7942_0702: Synpcc7942_0702 - hypothetical protein, at 693,257 to 694,045
_0702
Position (kb) 691
692
693 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 690.832 kb on - strand at 690.849 kb on - strand at 690.855 kb on + strand at 690.885 kb on + strand at 690.910 kb on - strand at 690.914 kb on - strand at 690.919 kb on - strand at 690.929 kb on - strand at 690.955 kb on - strand at 690.994 kb on + strand at 691.000 kb on - strand at 691.000 kb on - strand at 691.005 kb on - strand at 691.014 kb on - strand at 691.014 kb on - strand at 691.073 kb on - strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.126 kb on - strand at 691.128 kb on - strand at 691.128 kb on - strand at 691.137 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.165 kb on + strand at 691.168 kb on - strand, within Synpcc7942_0698 at 691.168 kb on - strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.185 kb on - strand, within Synpcc7942_0698 at 691.185 kb on - strand at 691.186 kb on - strand, within Synpcc7942_0698 at 691.217 kb on - strand at 691.239 kb on - strand, within Synpcc7942_0698 at 691.258 kb on - strand, within Synpcc7942_0698 at 691.291 kb on - strand, within Synpcc7942_0698 at 691.292 kb on - strand at 691.294 kb on + strand, within Synpcc7942_0698 at 691.302 kb on - strand, within Synpcc7942_0698 at 691.306 kb on + strand, within Synpcc7942_0698 at 691.312 kb on + strand, within Synpcc7942_0698 at 691.320 kb on - strand, within Synpcc7942_0698 at 691.333 kb on - strand, within Synpcc7942_0698 at 691.348 kb on + strand, within Synpcc7942_0698 at 691.369 kb on + strand, within Synpcc7942_0698 at 691.381 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.475 kb on + strand, within Synpcc7942_0698 at 691.485 kb on + strand at 691.506 kb on - strand at 691.516 kb on - strand at 691.522 kb on - strand at 691.549 kb on + strand at 691.557 kb on - strand at 691.566 kb on + strand at 691.567 kb on - strand at 691.603 kb on - strand at 691.611 kb on + strand at 691.733 kb on + strand at 691.829 kb on - strand at 691.847 kb on + strand at 691.847 kb on - strand at 691.847 kb on - strand at 691.883 kb on + strand at 691.920 kb on + strand, within Synpcc7942_0700 at 691.990 kb on + strand, within Synpcc7942_0700 at 692.006 kb on - strand, within Synpcc7942_0700 at 692.065 kb on + strand, within Synpcc7942_0700 at 692.192 kb on - strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.203 kb on + strand, within Synpcc7942_0700 at 692.203 kb on + strand, within Synpcc7942_0700 at 692.233 kb on - strand, within Synpcc7942_0700 at 692.243 kb on - strand, within Synpcc7942_0700 at 692.256 kb on - strand, within Synpcc7942_0700 at 692.273 kb on + strand, within Synpcc7942_0700 at 692.291 kb on + strand, within Synpcc7942_0700 at 692.300 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.347 kb on - strand, within Synpcc7942_0700 at 692.357 kb on - strand, within Synpcc7942_0700 at 692.374 kb on + strand, within Synpcc7942_0700 at 692.429 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.437 kb on - strand, within Synpcc7942_0700 at 692.486 kb on - strand, within Synpcc7942_0700 at 692.535 kb on + strand, within Synpcc7942_0700 at 692.664 kb on + strand at 692.664 kb on - strand at 692.691 kb on - strand at 692.693 kb on + strand at 692.696 kb on - strand at 692.698 kb on + strand at 692.714 kb on + strand at 692.724 kb on + strand at 692.732 kb on - strand at 692.732 kb on - strand at 692.732 kb on - strand at 692.732 kb on - strand at 692.773 kb on + strand at 692.783 kb on + strand at 692.791 kb on - strand at 692.801 kb on - strand at 692.824 kb on + strand at 692.858 kb on + strand, within Synpcc7942_0701 at 692.881 kb on + strand, within Synpcc7942_0701 at 692.930 kb on - strand, within Synpcc7942_0701 at 692.933 kb on + strand, within Synpcc7942_0701 at 693.007 kb on + strand, within Synpcc7942_0701 at 693.015 kb on - strand, within Synpcc7942_0701 at 693.037 kb on + strand, within Synpcc7942_0701 at 693.037 kb on + strand, within Synpcc7942_0701 at 693.041 kb on + strand, within Synpcc7942_0701 at 693.045 kb on - strand, within Synpcc7942_0701 at 693.046 kb on + strand, within Synpcc7942_0701 at 693.047 kb on + strand, within Synpcc7942_0701 at 693.051 kb on + strand, within Synpcc7942_0701 at 693.051 kb on + strand, within Synpcc7942_0701 at 693.059 kb on - strand, within Synpcc7942_0701 at 693.075 kb on - strand, within Synpcc7942_0701 at 693.085 kb on - strand, within Synpcc7942_0701 at 693.085 kb on - strand, within Synpcc7942_0701 at 693.095 kb on + strand, within Synpcc7942_0701 at 693.095 kb on + strand, within Synpcc7942_0701 at 693.103 kb on - strand, within Synpcc7942_0701 at 693.149 kb on + strand, within Synpcc7942_0701 at 693.199 kb on + strand, within Synpcc7942_0701 at 693.207 kb on + strand, within Synpcc7942_0701 at 693.207 kb on + strand, within Synpcc7942_0701 at 693.207 kb on + strand, within Synpcc7942_0701 at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.230 kb on + strand at 693.238 kb on - strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.240 kb on + strand at 693.245 kb on + strand at 693.245 kb on + strand at 693.245 kb on + strand at 693.248 kb on - strand at 693.248 kb on - strand at 693.250 kb on + strand at 693.296 kb on + strand at 693.300 kb on + strand at 693.306 kb on - strand at 693.328 kb on + strand at 693.500 kb on - strand, within Synpcc7942_0702 at 693.544 kb on + strand, within Synpcc7942_0702 at 693.567 kb on - strand, within Synpcc7942_0702 at 693.578 kb on - strand, within Synpcc7942_0702 at 693.587 kb on - strand, within Synpcc7942_0702 at 693.625 kb on + strand, within Synpcc7942_0702 at 693.627 kb on - strand, within Synpcc7942_0702 at 693.628 kb on - strand, within Synpcc7942_0702 at 693.632 kb on - strand, within Synpcc7942_0702 at 693.691 kb on + strand, within Synpcc7942_0702 at 693.691 kb on + strand, within Synpcc7942_0702 at 693.699 kb on - strand, within Synpcc7942_0702 at 693.703 kb on + strand, within Synpcc7942_0702 at 693.711 kb on - strand, within Synpcc7942_0702 at 693.711 kb on - strand, within Synpcc7942_0702 at 693.728 kb on + strand, within Synpcc7942_0702
Per-strain Table
Position Strand Gene LocusTag Fraction Grazed flask 4 outgrowth 150uE remove 690,832 - -0.7 690,849 - +2.1 690,855 + +0.4 690,885 + +0.3 690,910 - -0.2 690,914 - -0.2 690,919 - -0.3 690,929 - +1.0 690,955 - +0.7 690,994 + -0.3 691,000 - +0.4 691,000 - +0.9 691,005 - -0.0 691,014 - +0.6 691,014 - +0.4 691,073 - -0.3 691,075 + -0.6 691,075 + +0.4 691,075 + +0.1 691,083 - -0.3 691,083 - -0.4 691,083 - +1.3 691,126 - +0.5 691,128 - +0.5 691,128 - +0.9 691,137 + Synpcc7942_0698 0.12 +0.3 691,150 + Synpcc7942_0698 0.15 +0.3 691,150 + Synpcc7942_0698 0.15 +0.2 691,165 + +0.5 691,168 - Synpcc7942_0698 0.19 -0.8 691,168 - Synpcc7942_0698 0.19 +0.7 691,177 + Synpcc7942_0698 0.21 +0.4 691,177 + Synpcc7942_0698 0.21 +0.0 691,185 - Synpcc7942_0698 0.23 -1.3 691,185 - -1.1 691,186 - Synpcc7942_0698 0.23 +0.6 691,217 - +0.2 691,239 - Synpcc7942_0698 0.35 +0.9 691,258 - Synpcc7942_0698 0.40 +0.7 691,291 - Synpcc7942_0698 0.47 +0.2 691,292 - +0.2 691,294 + Synpcc7942_0698 0.48 -0.7 691,302 - Synpcc7942_0698 0.50 -3.4 691,306 + Synpcc7942_0698 0.51 -0.0 691,312 + Synpcc7942_0698 0.52 +0.1 691,320 - Synpcc7942_0698 0.54 +0.0 691,333 - Synpcc7942_0698 0.57 -0.0 691,348 + Synpcc7942_0698 0.60 -0.1 691,369 + Synpcc7942_0698 0.65 -2.7 691,381 + Synpcc7942_0698 0.68 -0.6 691,417 + Synpcc7942_0698 0.76 -0.0 691,417 + Synpcc7942_0698 0.76 +0.6 691,417 + Synpcc7942_0698 0.76 +1.8 691,425 - Synpcc7942_0698 0.78 -1.2 691,425 - Synpcc7942_0698 0.78 +0.3 691,475 + Synpcc7942_0698 0.90 +0.9 691,485 + -1.5 691,506 - -2.4 691,516 - +1.1 691,522 - -2.0 691,549 + -1.0 691,557 - +0.1 691,566 + +0.6 691,567 - -1.6 691,603 - +0.7 691,611 + -0.1 691,733 + -0.1 691,829 - -0.8 691,847 + -1.7 691,847 - -2.0 691,847 - -4.8 691,883 + +0.1 691,920 + Synpcc7942_0700 0.10 -0.7 691,990 + Synpcc7942_0700 0.18 -1.0 692,006 - Synpcc7942_0700 0.20 -2.4 692,065 + Synpcc7942_0700 0.26 -2.2 692,192 - Synpcc7942_0700 0.40 -1.2 692,193 + Synpcc7942_0700 0.40 -2.1 692,193 + Synpcc7942_0700 0.40 +0.3 692,193 + Synpcc7942_0700 0.40 +0.1 692,203 + Synpcc7942_0700 0.41 -0.9 692,203 + Synpcc7942_0700 0.41 -1.8 692,233 - Synpcc7942_0700 0.44 -2.1 692,243 - Synpcc7942_0700 0.45 -2.0 692,256 - Synpcc7942_0700 0.47 +0.2 692,273 + Synpcc7942_0700 0.49 -1.2 692,291 + Synpcc7942_0700 0.51 -0.7 692,300 + Synpcc7942_0700 0.52 -3.0 692,339 + Synpcc7942_0700 0.56 -1.1 692,339 + Synpcc7942_0700 0.56 -5.5 692,339 + Synpcc7942_0700 0.56 -2.6 692,339 + Synpcc7942_0700 0.56 -0.4 692,347 - Synpcc7942_0700 0.57 -1.8 692,357 - Synpcc7942_0700 0.58 -0.4 692,374 + Synpcc7942_0700 0.60 -0.2 692,429 + Synpcc7942_0700 0.66 -0.7 692,434 + Synpcc7942_0700 0.66 -1.5 692,434 + Synpcc7942_0700 0.66 -1.7 692,434 + Synpcc7942_0700 0.66 -3.1 692,434 + Synpcc7942_0700 0.66 -1.9 692,434 + Synpcc7942_0700 0.66 -0.6 692,437 - Synpcc7942_0700 0.67 -1.0 692,486 - Synpcc7942_0700 0.72 +0.1 692,535 + Synpcc7942_0700 0.77 -1.3 692,664 + +1.5 692,664 - -1.0 692,691 - -0.3 692,693 + +1.4 692,696 - -1.0 692,698 + +0.1 692,714 + +0.0 692,724 + -1.7 692,732 - -3.1 692,732 - -1.9 692,732 - -2.0 692,732 - -2.2 692,773 + +0.6 692,783 + -1.0 692,791 - -0.7 692,801 - -0.8 692,824 + +0.4 692,858 + Synpcc7942_0701 0.13 +0.5 692,881 + Synpcc7942_0701 0.18 +1.0 692,930 - Synpcc7942_0701 0.28 +1.3 692,933 + Synpcc7942_0701 0.29 -0.7 693,007 + Synpcc7942_0701 0.45 +0.0 693,015 - Synpcc7942_0701 0.47 +0.4 693,037 + Synpcc7942_0701 0.52 -0.8 693,037 + Synpcc7942_0701 0.52 -0.5 693,041 + Synpcc7942_0701 0.52 +0.3 693,045 - Synpcc7942_0701 0.53 +0.3 693,046 + Synpcc7942_0701 0.53 +0.2 693,047 + Synpcc7942_0701 0.54 +0.1 693,051 + Synpcc7942_0701 0.55 -0.9 693,051 + Synpcc7942_0701 0.55 +1.0 693,059 - Synpcc7942_0701 0.56 -0.9 693,075 - Synpcc7942_0701 0.60 +0.0 693,085 - Synpcc7942_0701 0.62 +1.3 693,085 - Synpcc7942_0701 0.62 +0.2 693,095 + Synpcc7942_0701 0.64 +0.3 693,095 + Synpcc7942_0701 0.64 +0.6 693,103 - Synpcc7942_0701 0.66 -0.0 693,149 + Synpcc7942_0701 0.76 +0.7 693,199 + Synpcc7942_0701 0.87 +0.3 693,207 + Synpcc7942_0701 0.88 +0.9 693,207 + Synpcc7942_0701 0.88 -0.3 693,207 + Synpcc7942_0701 0.88 +0.8 693,230 + -0.3 693,230 + +0.6 693,230 + +0.1 693,230 + +1.2 693,230 + +0.1 693,230 + +1.1 693,230 + +0.3 693,238 - +0.4 693,240 + +0.6 693,240 + +1.1 693,240 + -0.2 693,240 + +0.1 693,240 + +1.0 693,240 + +0.1 693,245 + +0.1 693,245 + +1.0 693,245 + +1.0 693,248 - +0.2 693,248 - +0.4 693,250 + -0.5 693,296 + -0.6 693,300 + +0.5 693,306 - +0.3 693,328 + +0.0 693,500 - Synpcc7942_0702 0.31 +0.8 693,544 + Synpcc7942_0702 0.36 -1.7 693,567 - Synpcc7942_0702 0.39 -0.1 693,578 - Synpcc7942_0702 0.41 +0.8 693,587 - Synpcc7942_0702 0.42 +0.5 693,625 + Synpcc7942_0702 0.47 +0.3 693,627 - Synpcc7942_0702 0.47 -0.3 693,628 - Synpcc7942_0702 0.47 +0.6 693,632 - Synpcc7942_0702 0.48 -0.1 693,691 + Synpcc7942_0702 0.55 -0.5 693,691 + Synpcc7942_0702 0.55 -0.0 693,699 - Synpcc7942_0702 0.56 +0.8 693,703 + Synpcc7942_0702 0.57 -0.6 693,711 - Synpcc7942_0702 0.58 +0.4 693,711 - Synpcc7942_0702 0.58 +0.4 693,728 + Synpcc7942_0702 0.60 +0.2
Or see this region's nucleotide sequence