Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4888

Experiment: KB with Veratrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4887 and Psyr_4888 are separated by 3 nucleotidesPsyr_4888 and Psyr_4889 are separated by 252 nucleotides Psyr_4887: Psyr_4887 - Peptidase S41A, C-terminal protease, at 5,797,351 to 5,798,688 _4887 Psyr_4888: Psyr_4888 - Protein of unknown function DUF610, at 5,798,692 to 5,799,474 _4888 Psyr_4889: Psyr_4889 - conserved hypothetical protein, at 5,799,727 to 5,801,550 _4889 Position (kb) 5798 5799 5800Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5797.990 kb on + strand, within Psyr_4887at 5797.990 kb on + strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5797.991 kb on - strand, within Psyr_4887at 5798.176 kb on + strand, within Psyr_4887at 5798.176 kb on + strand, within Psyr_4887at 5798.177 kb on - strand, within Psyr_4887at 5798.196 kb on + strand, within Psyr_4887at 5798.196 kb on + strand, within Psyr_4887at 5798.197 kb on - strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.422 kb on + strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.423 kb on - strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.425 kb on + strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.426 kb on - strand, within Psyr_4887at 5798.480 kb on + strand, within Psyr_4887at 5798.480 kb on + strand, within Psyr_4887at 5798.480 kb on + strand, within Psyr_4887at 5798.481 kb on - strand, within Psyr_4887at 5798.481 kb on - strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.521 kb on + strand, within Psyr_4887at 5798.522 kb on - strand, within Psyr_4887at 5798.522 kb on - strand, within Psyr_4887at 5798.522 kb on - strand, within Psyr_4887at 5798.670 kb on + strandat 5798.671 kb on - strandat 5798.712 kb on - strandat 5798.785 kb on + strand, within Psyr_4888at 5798.786 kb on - strand, within Psyr_4888at 5799.125 kb on + strand, within Psyr_4888at 5799.125 kb on + strand, within Psyr_4888at 5799.126 kb on - strand, within Psyr_4888at 5799.126 kb on - strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.227 kb on + strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.228 kb on - strand, within Psyr_4888at 5799.301 kb on + strand, within Psyr_4888at 5799.301 kb on + strand, within Psyr_4888at 5799.302 kb on - strand, within Psyr_4888at 5799.302 kb on - strand, within Psyr_4888at 5799.350 kb on + strand, within Psyr_4888at 5799.466 kb on + strandat 5799.513 kb on + strandat 5799.513 kb on + strandat 5799.514 kb on - strandat 5799.514 kb on - strandat 5799.547 kb on + strandat 5799.547 kb on + strandat 5799.563 kb on + strandat 5799.617 kb on + strandat 5799.618 kb on - strandat 5799.642 kb on + strandat 5799.643 kb on - strandat 5799.643 kb on - strandat 5799.677 kb on + strandat 5799.678 kb on - strandat 5799.678 kb on - strandat 5799.678 kb on - strandat 5799.678 kb on - strandat 5799.848 kb on + strandat 5799.849 kb on - strandat 5799.892 kb on + strandat 5799.893 kb on - strandat 5799.972 kb on - strand, within Psyr_4889at 5799.997 kb on + strand, within Psyr_4889at 5799.997 kb on + strand, within Psyr_4889at 5800.004 kb on + strand, within Psyr_4889at 5800.005 kb on - strand, within Psyr_4889at 5800.134 kb on + strand, within Psyr_4889at 5800.134 kb on + strand, within Psyr_4889at 5800.140 kb on + strand, within Psyr_4889at 5800.240 kb on + strand, within Psyr_4889at 5800.274 kb on + strand, within Psyr_4889at 5800.287 kb on + strand, within Psyr_4889at 5800.303 kb on + strand, within Psyr_4889at 5800.303 kb on + strand, within Psyr_4889at 5800.303 kb on + strand, within Psyr_4889at 5800.303 kb on + strand, within Psyr_4889at 5800.303 kb on + strand, within Psyr_4889at 5800.304 kb on - strand, within Psyr_4889at 5800.304 kb on - strand, within Psyr_4889at 5800.304 kb on - strand, within Psyr_4889at 5800.304 kb on - strand, within Psyr_4889at 5800.304 kb on - strand, within Psyr_4889at 5800.304 kb on - strand, within Psyr_4889at 5800.304 kb on - strand, within Psyr_4889at 5800.350 kb on + strand, within Psyr_4889at 5800.350 kb on + strand, within Psyr_4889at 5800.351 kb on - strand, within Psyr_4889at 5800.403 kb on + strand, within Psyr_4889at 5800.403 kb on + strand, within Psyr_4889at 5800.404 kb on - strand, within Psyr_4889at 5800.404 kb on - strand, within Psyr_4889at 5800.417 kb on + strand, within Psyr_4889

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM
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5,797,990 + Psyr_4887 0.48 +1.2
5,797,990 + Psyr_4887 0.48 -0.4
5,797,991 - Psyr_4887 0.48 -0.8
5,797,991 - Psyr_4887 0.48 +0.4
5,797,991 - Psyr_4887 0.48 -2.1
5,797,991 - Psyr_4887 0.48 -0.1
5,798,176 + Psyr_4887 0.62 -0.8
5,798,176 + Psyr_4887 0.62 -0.1
5,798,177 - Psyr_4887 0.62 -1.3
5,798,196 + Psyr_4887 0.63 +1.9
5,798,196 + Psyr_4887 0.63 -1.2
5,798,197 - Psyr_4887 0.63 +1.1
5,798,422 + Psyr_4887 0.80 -0.6
5,798,422 + Psyr_4887 0.80 -1.4
5,798,422 + Psyr_4887 0.80 -0.9
5,798,422 + Psyr_4887 0.80 +1.2
5,798,422 + Psyr_4887 0.80 -1.0
5,798,422 + Psyr_4887 0.80 -2.0
5,798,422 + Psyr_4887 0.80 -0.5
5,798,422 + Psyr_4887 0.80 -1.2
5,798,423 - Psyr_4887 0.80 -0.6
5,798,423 - Psyr_4887 0.80 +0.6
5,798,423 - Psyr_4887 0.80 -1.8
5,798,423 - Psyr_4887 0.80 -1.8
5,798,425 + Psyr_4887 0.80 -1.1
5,798,425 + Psyr_4887 0.80 -0.0
5,798,425 + Psyr_4887 0.80 -1.0
5,798,425 + Psyr_4887 0.80 +0.4
5,798,425 + Psyr_4887 0.80 +0.5
5,798,426 - Psyr_4887 0.80 -1.2
5,798,426 - Psyr_4887 0.80 -1.1
5,798,426 - Psyr_4887 0.80 -0.6
5,798,426 - Psyr_4887 0.80 -0.7
5,798,480 + Psyr_4887 0.84 -0.1
5,798,480 + Psyr_4887 0.84 +0.4
5,798,480 + Psyr_4887 0.84 -1.4
5,798,481 - Psyr_4887 0.84 -2.7
5,798,481 - Psyr_4887 0.84 +0.5
5,798,521 + Psyr_4887 0.87 -1.0
5,798,521 + Psyr_4887 0.87 -1.1
5,798,521 + Psyr_4887 0.87 -1.4
5,798,521 + Psyr_4887 0.87 +0.2
5,798,521 + Psyr_4887 0.87 -0.7
5,798,521 + Psyr_4887 0.87 +0.2
5,798,522 - Psyr_4887 0.88 -0.2
5,798,522 - Psyr_4887 0.88 +0.2
5,798,522 - Psyr_4887 0.88 +1.4
5,798,670 + -0.5
5,798,671 - +1.2
5,798,712 - -0.4
5,798,785 + Psyr_4888 0.12 +1.2
5,798,786 - Psyr_4888 0.12 -1.1
5,799,125 + Psyr_4888 0.55 +2.8
5,799,125 + Psyr_4888 0.55 +0.8
5,799,126 - Psyr_4888 0.55 -0.7
5,799,126 - Psyr_4888 0.55 -2.5
5,799,227 + Psyr_4888 0.68 -1.0
5,799,227 + Psyr_4888 0.68 +0.2
5,799,227 + Psyr_4888 0.68 -0.4
5,799,227 + Psyr_4888 0.68 -0.9
5,799,227 + Psyr_4888 0.68 +0.1
5,799,228 - Psyr_4888 0.68 -1.3
5,799,228 - Psyr_4888 0.68 +0.6
5,799,228 - Psyr_4888 0.68 +0.3
5,799,228 - Psyr_4888 0.68 +0.4
5,799,228 - Psyr_4888 0.68 -1.3
5,799,301 + Psyr_4888 0.78 -0.1
5,799,301 + Psyr_4888 0.78 -1.7
5,799,302 - Psyr_4888 0.78 -0.6
5,799,302 - Psyr_4888 0.78 -2.4
5,799,350 + Psyr_4888 0.84 +1.6
5,799,466 + +0.6
5,799,513 + -1.1
5,799,513 + +0.0
5,799,514 - -2.8
5,799,514 - -0.8
5,799,547 + +0.3
5,799,547 + -0.2
5,799,563 + -0.8
5,799,617 + -0.3
5,799,618 - +0.0
5,799,642 + -0.6
5,799,643 - +0.5
5,799,643 - -1.6
5,799,677 + +0.6
5,799,678 - -0.7
5,799,678 - +2.5
5,799,678 - -0.4
5,799,678 - -0.3
5,799,848 + +0.7
5,799,849 - +0.4
5,799,892 + +1.8
5,799,893 - -0.2
5,799,972 - Psyr_4889 0.13 -0.3
5,799,997 + Psyr_4889 0.15 -0.6
5,799,997 + Psyr_4889 0.15 -0.2
5,800,004 + Psyr_4889 0.15 +1.1
5,800,005 - Psyr_4889 0.15 +0.3
5,800,134 + Psyr_4889 0.22 -0.4
5,800,134 + Psyr_4889 0.22 +1.2
5,800,140 + Psyr_4889 0.23 +0.0
5,800,240 + Psyr_4889 0.28 -0.4
5,800,274 + Psyr_4889 0.30 -1.2
5,800,287 + Psyr_4889 0.31 -0.6
5,800,303 + Psyr_4889 0.32 -0.1
5,800,303 + Psyr_4889 0.32 -0.4
5,800,303 + Psyr_4889 0.32 -2.0
5,800,303 + Psyr_4889 0.32 +3.2
5,800,303 + Psyr_4889 0.32 +1.1
5,800,304 - Psyr_4889 0.32 +0.7
5,800,304 - Psyr_4889 0.32 -0.6
5,800,304 - Psyr_4889 0.32 +3.2
5,800,304 - Psyr_4889 0.32 -0.3
5,800,304 - Psyr_4889 0.32 -0.4
5,800,304 - Psyr_4889 0.32 +0.6
5,800,304 - Psyr_4889 0.32 +0.7
5,800,350 + Psyr_4889 0.34 +0.6
5,800,350 + Psyr_4889 0.34 +0.2
5,800,351 - Psyr_4889 0.34 +1.0
5,800,403 + Psyr_4889 0.37 +1.9
5,800,403 + Psyr_4889 0.37 -0.5
5,800,404 - Psyr_4889 0.37 -1.4
5,800,404 - Psyr_4889 0.37 +1.5
5,800,417 + Psyr_4889 0.38 -1.5

Or see this region's nucleotide sequence