Experiment: KB with Veratrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4089 and Psyr_4090 are separated by 15 nucleotides Psyr_4090 and Psyr_4091 are separated by 261 nucleotides Psyr_4091 and Psyr_4092 are separated by 2 nucleotides Psyr_4092 and Psyr_4093 are separated by 57 nucleotides
Psyr_4089: Psyr_4089 - PAS, at 4,874,589 to 4,876,625
_4089
Psyr_4090: Psyr_4090 - ATP:cob(I)alamin adenosyltransferase, at 4,876,641 to 4,877,219
_4090
Psyr_4091: Psyr_4091 - 8-oxo-dGTPase, at 4,877,481 to 4,878,431
_4091
Psyr_4092: Psyr_4092 - Glutathione S-transferase, N-terminal, at 4,878,434 to 4,879,060
_4092
Psyr_4093: Psyr_4093 - glutamate N-acetyltransferase, at 4,879,118 to 4,880,335
_4093
Position (kb) 4877
4878
4879 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4876.528 kb on + strand at 4876.528 kb on + strand at 4876.529 kb on - strand at 4876.665 kb on + strand at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4877.040 kb on - strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.279 kb on + strand at 4877.283 kb on + strand at 4877.283 kb on + strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.356 kb on - strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.427 kb on + strand at 4877.428 kb on - strand at 4877.428 kb on - strand at 4877.431 kb on + strand at 4877.431 kb on + strand at 4877.432 kb on - strand at 4877.432 kb on - strand at 4877.788 kb on + strand, within Psyr_4091 at 4877.788 kb on + strand, within Psyr_4091 at 4877.788 kb on + strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.920 kb on + strand, within Psyr_4091 at 4877.921 kb on - strand, within Psyr_4091 at 4877.933 kb on - strand, within Psyr_4091 at 4878.037 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.095 kb on - strand, within Psyr_4091 at 4878.095 kb on - strand, within Psyr_4091 at 4878.378 kb on + strand at 4878.486 kb on + strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.501 kb on + strand, within Psyr_4092 at 4878.501 kb on + strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.535 kb on - strand, within Psyr_4092 at 4878.725 kb on - strand, within Psyr_4092 at 4878.840 kb on + strand, within Psyr_4092 at 4878.841 kb on - strand, within Psyr_4092 at 4878.841 kb on - strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.916 kb on - strand, within Psyr_4092 at 4878.916 kb on - strand, within Psyr_4092 at 4879.026 kb on + strand at 4879.027 kb on - strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.264 kb on - strand, within Psyr_4093 at 4879.264 kb on - strand, within Psyr_4093 at 4879.298 kb on + strand, within Psyr_4093 at 4879.298 kb on + strand, within Psyr_4093 at 4879.313 kb on + strand, within Psyr_4093 at 4879.313 kb on + strand, within Psyr_4093 at 4879.314 kb on - strand, within Psyr_4093 at 4879.372 kb on + strand, within Psyr_4093 at 4879.373 kb on - strand, within Psyr_4093 at 4879.373 kb on - strand, within Psyr_4093
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM remove 4,876,528 + +1.9 4,876,528 + -0.7 4,876,529 - +0.6 4,876,665 + +1.1 4,876,846 + Psyr_4090 0.35 -0.3 4,876,846 + Psyr_4090 0.35 +0.5 4,876,846 + Psyr_4090 0.35 -0.1 4,876,846 + Psyr_4090 0.35 -0.1 4,876,847 - Psyr_4090 0.36 -0.0 4,876,847 - Psyr_4090 0.36 +1.0 4,876,847 - Psyr_4090 0.36 +1.9 4,876,905 + Psyr_4090 0.46 -2.4 4,876,905 + Psyr_4090 0.46 +1.5 4,876,905 + Psyr_4090 0.46 -0.7 4,876,906 - Psyr_4090 0.46 -2.4 4,876,906 - Psyr_4090 0.46 -0.9 4,877,040 - Psyr_4090 0.69 +0.2 4,877,115 + Psyr_4090 0.82 +0.4 4,877,115 + Psyr_4090 0.82 -0.3 4,877,115 + Psyr_4090 0.82 +0.5 4,877,115 + Psyr_4090 0.82 +0.5 4,877,116 - Psyr_4090 0.82 +1.1 4,877,116 - Psyr_4090 0.82 -1.6 4,877,116 - Psyr_4090 0.82 -0.7 4,877,116 - Psyr_4090 0.82 +0.6 4,877,116 - Psyr_4090 0.82 -0.2 4,877,226 + +0.5 4,877,226 + -0.2 4,877,226 + +0.5 4,877,226 + +0.8 4,877,226 + +0.1 4,877,227 - +0.8 4,877,227 - -1.6 4,877,227 - -0.8 4,877,279 + -0.1 4,877,283 + +1.1 4,877,283 + -0.3 4,877,284 - -0.3 4,877,284 - +2.5 4,877,284 - -0.4 4,877,285 + +2.2 4,877,285 + -0.2 4,877,285 + +0.3 4,877,285 + +0.5 4,877,285 + -1.6 4,877,285 + -2.1 4,877,285 + -1.9 4,877,285 + -1.5 4,877,285 + +1.6 4,877,285 + -0.6 4,877,285 + +1.5 4,877,285 + +1.0 4,877,285 + +0.2 4,877,285 + -2.7 4,877,286 - +2.8 4,877,286 - +0.0 4,877,286 - +1.3 4,877,286 - +1.2 4,877,286 - +1.9 4,877,286 - +0.5 4,877,286 - +0.9 4,877,286 - +0.5 4,877,286 - -0.9 4,877,286 - +1.3 4,877,286 - -0.3 4,877,286 - +2.5 4,877,286 - -0.5 4,877,356 - +3.2 4,877,419 + +0.2 4,877,419 + -1.4 4,877,419 + +0.3 4,877,419 + +0.5 4,877,419 + -1.5 4,877,419 + -0.3 4,877,419 + +0.6 4,877,419 + +3.9 4,877,419 + +1.3 4,877,419 + -0.1 4,877,419 + +0.0 4,877,419 + -1.0 4,877,420 - +0.1 4,877,420 - -1.4 4,877,420 - -0.1 4,877,420 - +0.6 4,877,420 - -1.4 4,877,427 + -0.4 4,877,428 - +0.2 4,877,428 - +1.2 4,877,431 + -0.2 4,877,431 + +1.7 4,877,432 - -0.6 4,877,432 - -0.4 4,877,788 + Psyr_4091 0.32 -5.0 4,877,788 + Psyr_4091 0.32 -2.1 4,877,788 + Psyr_4091 0.32 -3.2 4,877,789 - Psyr_4091 0.32 -1.1 4,877,789 - Psyr_4091 0.32 -1.6 4,877,789 - Psyr_4091 0.32 +0.9 4,877,920 + Psyr_4091 0.46 -4.0 4,877,921 - Psyr_4091 0.46 -3.1 4,877,933 - Psyr_4091 0.48 -1.7 4,878,037 + Psyr_4091 0.58 -3.8 4,878,094 + Psyr_4091 0.64 -4.6 4,878,094 + Psyr_4091 0.64 -2.8 4,878,094 + Psyr_4091 0.64 -2.1 4,878,094 + Psyr_4091 0.64 -1.9 4,878,094 + Psyr_4091 0.64 -3.4 4,878,095 - Psyr_4091 0.65 -2.9 4,878,095 - Psyr_4091 0.65 -0.5 4,878,378 + -1.6 4,878,486 + -1.9 4,878,487 - -1.1 4,878,487 - +1.0 4,878,487 - -0.6 4,878,487 - -0.4 4,878,487 - -2.1 4,878,487 - -0.5 4,878,487 - +0.6 4,878,487 - -0.3 4,878,487 - -0.4 4,878,501 + Psyr_4092 0.11 -1.4 4,878,501 + Psyr_4092 0.11 -0.1 4,878,502 - Psyr_4092 0.11 +0.7 4,878,502 - Psyr_4092 0.11 +0.2 4,878,502 - Psyr_4092 0.11 +2.9 4,878,502 - Psyr_4092 0.11 -1.6 4,878,502 - Psyr_4092 0.11 -1.4 4,878,535 - Psyr_4092 0.16 +0.5 4,878,725 - Psyr_4092 0.46 +2.6 4,878,840 + Psyr_4092 0.65 -0.0 4,878,841 - Psyr_4092 0.65 +0.3 4,878,841 - Psyr_4092 0.65 +1.9 4,878,915 + Psyr_4092 0.77 -0.9 4,878,915 + Psyr_4092 0.77 -0.4 4,878,915 + Psyr_4092 0.77 -0.8 4,878,916 - Psyr_4092 0.77 -0.7 4,878,916 - Psyr_4092 0.77 +1.0 4,879,026 + -0.3 4,879,027 - -0.1 4,879,149 + -1.0 4,879,149 + -1.3 4,879,149 + -0.5 4,879,149 + -1.4 4,879,263 + Psyr_4093 0.12 -0.5 4,879,263 + Psyr_4093 0.12 +0.4 4,879,263 + Psyr_4093 0.12 +0.3 4,879,263 + Psyr_4093 0.12 +0.2 4,879,264 - Psyr_4093 0.12 -1.3 4,879,264 - Psyr_4093 0.12 -0.3 4,879,298 + Psyr_4093 0.15 -0.1 4,879,298 + Psyr_4093 0.15 +0.0 4,879,313 + Psyr_4093 0.16 -0.5 4,879,313 + Psyr_4093 0.16 +0.1 4,879,314 - Psyr_4093 0.16 +0.1 4,879,372 + Psyr_4093 0.21 -0.7 4,879,373 - Psyr_4093 0.21 -0.7 4,879,373 - Psyr_4093 0.21 -0.7
Or see this region's nucleotide sequence