Experiment: KB with Veratrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3734 and Psyr_3735 are separated by 559 nucleotides Psyr_3735 and Psyr_3736 are separated by 625 nucleotides
Psyr_3734: Psyr_3734 - Outer membrane autotransporter barrel, at 4,443,425 to 4,446,430
_3734
Psyr_3735: Psyr_3735 - PAS, at 4,446,990 to 4,448,555
_3735
Psyr_3736: Psyr_3736 - Peptidoglycan-binding LysM, at 4,449,181 to 4,451,394
_3736
Position (kb) 4446
4447
4448
4449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4446.108 kb on + strand, within Psyr_3734 at 4446.108 kb on + strand, within Psyr_3734 at 4446.108 kb on + strand, within Psyr_3734 at 4446.108 kb on + strand, within Psyr_3734 at 4446.108 kb on + strand, within Psyr_3734 at 4446.108 kb on + strand, within Psyr_3734 at 4446.108 kb on + strand, within Psyr_3734 at 4446.109 kb on - strand, within Psyr_3734 at 4446.109 kb on - strand, within Psyr_3734 at 4446.109 kb on - strand, within Psyr_3734 at 4446.109 kb on - strand, within Psyr_3734 at 4446.109 kb on - strand, within Psyr_3734 at 4446.321 kb on + strand at 4446.322 kb on - strand at 4446.322 kb on - strand at 4446.322 kb on - strand at 4446.331 kb on - strand at 4446.349 kb on + strand at 4446.350 kb on - strand at 4446.350 kb on - strand at 4446.397 kb on - strand at 4446.446 kb on - strand at 4446.480 kb on + strand at 4446.481 kb on - strand at 4446.481 kb on - strand at 4446.564 kb on + strand at 4446.565 kb on - strand at 4446.566 kb on + strand at 4446.566 kb on + strand at 4446.567 kb on - strand at 4446.700 kb on + strand at 4446.700 kb on + strand at 4446.749 kb on + strand at 4446.750 kb on - strand at 4446.753 kb on + strand at 4446.753 kb on + strand at 4446.830 kb on + strand at 4446.907 kb on + strand at 4446.907 kb on + strand at 4446.907 kb on + strand at 4446.907 kb on + strand at 4446.907 kb on + strand at 4446.908 kb on - strand at 4446.908 kb on - strand at 4446.908 kb on - strand at 4446.908 kb on - strand at 4446.908 kb on - strand at 4446.908 kb on - strand at 4447.377 kb on + strand, within Psyr_3735 at 4447.377 kb on + strand, within Psyr_3735 at 4447.903 kb on + strand, within Psyr_3735 at 4447.903 kb on + strand, within Psyr_3735 at 4447.903 kb on + strand, within Psyr_3735 at 4447.903 kb on + strand, within Psyr_3735 at 4447.904 kb on - strand, within Psyr_3735 at 4447.904 kb on - strand, within Psyr_3735 at 4447.980 kb on + strand, within Psyr_3735 at 4447.980 kb on + strand, within Psyr_3735 at 4447.980 kb on + strand, within Psyr_3735 at 4447.980 kb on + strand, within Psyr_3735 at 4447.980 kb on + strand, within Psyr_3735 at 4447.980 kb on + strand, within Psyr_3735 at 4447.981 kb on - strand, within Psyr_3735 at 4447.981 kb on - strand, within Psyr_3735 at 4447.981 kb on - strand, within Psyr_3735 at 4448.053 kb on + strand, within Psyr_3735 at 4448.113 kb on + strand, within Psyr_3735 at 4448.114 kb on - strand, within Psyr_3735 at 4448.167 kb on + strand, within Psyr_3735 at 4448.167 kb on + strand, within Psyr_3735 at 4448.167 kb on + strand, within Psyr_3735 at 4448.167 kb on + strand, within Psyr_3735 at 4448.167 kb on + strand, within Psyr_3735 at 4448.167 kb on + strand, within Psyr_3735 at 4448.168 kb on - strand, within Psyr_3735 at 4448.259 kb on + strand, within Psyr_3735 at 4448.259 kb on + strand, within Psyr_3735 at 4448.263 kb on + strand, within Psyr_3735 at 4448.263 kb on + strand, within Psyr_3735 at 4448.263 kb on + strand, within Psyr_3735 at 4448.263 kb on + strand, within Psyr_3735 at 4448.264 kb on - strand, within Psyr_3735 at 4448.264 kb on - strand, within Psyr_3735 at 4448.279 kb on - strand, within Psyr_3735 at 4448.281 kb on + strand, within Psyr_3735 at 4448.282 kb on - strand, within Psyr_3735 at 4448.351 kb on + strand, within Psyr_3735 at 4448.351 kb on + strand, within Psyr_3735 at 4448.351 kb on + strand, within Psyr_3735 at 4448.351 kb on + strand, within Psyr_3735 at 4448.351 kb on + strand, within Psyr_3735 at 4448.352 kb on - strand, within Psyr_3735 at 4448.352 kb on - strand, within Psyr_3735 at 4448.352 kb on - strand, within Psyr_3735 at 4448.352 kb on - strand, within Psyr_3735 at 4448.461 kb on + strand at 4448.461 kb on + strand at 4448.461 kb on + strand at 4448.461 kb on + strand at 4448.462 kb on - strand at 4448.557 kb on - strand at 4448.557 kb on - strand at 4448.607 kb on - strand at 4448.607 kb on - strand at 4448.607 kb on - strand at 4448.702 kb on + strand at 4448.703 kb on - strand at 4448.731 kb on + strand at 4448.731 kb on + strand at 4448.854 kb on - strand at 4449.422 kb on - strand, within Psyr_3736
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM remove 4,446,108 + Psyr_3734 0.89 +0.7 4,446,108 + Psyr_3734 0.89 -0.5 4,446,108 + Psyr_3734 0.89 +0.0 4,446,108 + Psyr_3734 0.89 +1.1 4,446,108 + Psyr_3734 0.89 +0.3 4,446,108 + Psyr_3734 0.89 -1.1 4,446,108 + Psyr_3734 0.89 -2.4 4,446,109 - Psyr_3734 0.89 +1.1 4,446,109 - Psyr_3734 0.89 +0.4 4,446,109 - Psyr_3734 0.89 -0.1 4,446,109 - Psyr_3734 0.89 -0.4 4,446,109 - Psyr_3734 0.89 +0.4 4,446,321 + -0.0 4,446,322 - -0.0 4,446,322 - +0.9 4,446,322 - +0.2 4,446,331 - -0.5 4,446,349 + -1.1 4,446,350 - -1.2 4,446,350 - -0.1 4,446,397 - -0.8 4,446,446 - +1.0 4,446,480 + -0.3 4,446,481 - +0.9 4,446,481 - +1.0 4,446,564 + -1.9 4,446,565 - -1.4 4,446,566 + +0.9 4,446,566 + -0.8 4,446,567 - +0.8 4,446,700 + -0.0 4,446,700 + +0.4 4,446,749 + -1.3 4,446,750 - +0.4 4,446,753 + +1.3 4,446,753 + +0.9 4,446,830 + -0.2 4,446,907 + +0.3 4,446,907 + +1.2 4,446,907 + +1.9 4,446,907 + +1.9 4,446,907 + -0.4 4,446,908 - +0.0 4,446,908 - +0.5 4,446,908 - +0.4 4,446,908 - +2.5 4,446,908 - -0.6 4,446,908 - -0.6 4,447,377 + Psyr_3735 0.25 +0.8 4,447,377 + Psyr_3735 0.25 +1.9 4,447,903 + Psyr_3735 0.58 +0.1 4,447,903 + Psyr_3735 0.58 +2.5 4,447,903 + Psyr_3735 0.58 +1.1 4,447,903 + Psyr_3735 0.58 -0.0 4,447,904 - Psyr_3735 0.58 +0.4 4,447,904 - Psyr_3735 0.58 -0.0 4,447,980 + Psyr_3735 0.63 +0.5 4,447,980 + Psyr_3735 0.63 +0.3 4,447,980 + Psyr_3735 0.63 -0.6 4,447,980 + Psyr_3735 0.63 -0.5 4,447,980 + Psyr_3735 0.63 +0.2 4,447,980 + Psyr_3735 0.63 +1.5 4,447,981 - Psyr_3735 0.63 -0.1 4,447,981 - Psyr_3735 0.63 -1.2 4,447,981 - Psyr_3735 0.63 -1.9 4,448,053 + Psyr_3735 0.68 -0.6 4,448,113 + Psyr_3735 0.72 +0.5 4,448,114 - Psyr_3735 0.72 +0.3 4,448,167 + Psyr_3735 0.75 +0.3 4,448,167 + Psyr_3735 0.75 +0.1 4,448,167 + Psyr_3735 0.75 -0.2 4,448,167 + Psyr_3735 0.75 -1.7 4,448,167 + Psyr_3735 0.75 -0.1 4,448,167 + Psyr_3735 0.75 +0.6 4,448,168 - Psyr_3735 0.75 +0.5 4,448,259 + Psyr_3735 0.81 +0.4 4,448,259 + Psyr_3735 0.81 +1.4 4,448,263 + Psyr_3735 0.81 +2.1 4,448,263 + Psyr_3735 0.81 -0.4 4,448,263 + Psyr_3735 0.81 +0.9 4,448,263 + Psyr_3735 0.81 -1.6 4,448,264 - Psyr_3735 0.81 +1.6 4,448,264 - Psyr_3735 0.81 +1.1 4,448,279 - Psyr_3735 0.82 -1.2 4,448,281 + Psyr_3735 0.82 -1.0 4,448,282 - Psyr_3735 0.83 +1.5 4,448,351 + Psyr_3735 0.87 +4.2 4,448,351 + Psyr_3735 0.87 -1.1 4,448,351 + Psyr_3735 0.87 +1.1 4,448,351 + Psyr_3735 0.87 +0.7 4,448,351 + Psyr_3735 0.87 -0.8 4,448,352 - Psyr_3735 0.87 +0.4 4,448,352 - Psyr_3735 0.87 -0.3 4,448,352 - Psyr_3735 0.87 +0.6 4,448,352 - Psyr_3735 0.87 +0.5 4,448,461 + -3.6 4,448,461 + +0.7 4,448,461 + -0.8 4,448,461 + +0.3 4,448,462 - -0.1 4,448,557 - -2.3 4,448,557 - -0.9 4,448,607 - -1.2 4,448,607 - -0.4 4,448,607 - +0.9 4,448,702 + +0.3 4,448,703 - +0.2 4,448,731 + -2.4 4,448,731 + +0.1 4,448,854 - -1.5 4,449,422 - Psyr_3736 0.11 +0.6
Or see this region's nucleotide sequence