Experiment: KB with Veratrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3109 and Psyr_3110 are separated by 168 nucleotides Psyr_3110 and Psyr_3111 are separated by 10 nucleotides Psyr_3111 and Psyr_3112 are separated by 106 nucleotides
Psyr_3109: Psyr_3109 - conserved hypothetical protein, at 3,725,843 to 3,727,546
_3109
Psyr_3110: Psyr_3110 - Nucleoside 2-deoxyribosyltransferase, at 3,727,715 to 3,728,233
_3110
Psyr_3111: Psyr_3111 - transcriptional regulator, LysR family, at 3,728,244 to 3,729,146
_3111
Psyr_3112: Psyr_3112 - Putative ammonia monooxygenase, at 3,729,253 to 3,730,341
_3112
Position (kb)
3728
3729
3730 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3727.296 kb on - strand, within Psyr_3109 at 3727.336 kb on - strand, within Psyr_3109 at 3727.512 kb on + strand at 3727.512 kb on + strand at 3727.515 kb on + strand at 3727.515 kb on + strand at 3727.516 kb on - strand at 3727.516 kb on - strand at 3727.540 kb on + strand at 3727.540 kb on + strand at 3727.540 kb on + strand at 3727.540 kb on + strand at 3727.540 kb on + strand at 3727.541 kb on - strand at 3727.541 kb on - strand at 3727.561 kb on + strand at 3727.561 kb on + strand at 3727.561 kb on + strand at 3727.561 kb on + strand at 3727.561 kb on + strand at 3727.562 kb on - strand at 3727.562 kb on - strand at 3727.562 kb on - strand at 3727.653 kb on + strand at 3727.654 kb on - strand at 3727.677 kb on - strand at 3727.691 kb on - strand at 3727.693 kb on + strand at 3727.693 kb on + strand at 3727.693 kb on + strand at 3727.693 kb on + strand at 3727.694 kb on - strand at 3727.694 kb on - strand at 3727.694 kb on - strand at 3727.694 kb on - strand at 3727.694 kb on - strand at 3727.714 kb on + strand at 3727.715 kb on - strand at 3727.733 kb on + strand at 3727.734 kb on - strand at 3727.734 kb on - strand at 3727.785 kb on - strand, within Psyr_3110 at 3727.886 kb on + strand, within Psyr_3110 at 3727.886 kb on + strand, within Psyr_3110 at 3728.024 kb on + strand, within Psyr_3110 at 3728.025 kb on - strand, within Psyr_3110 at 3728.095 kb on + strand, within Psyr_3110 at 3728.195 kb on + strand at 3728.317 kb on + strand at 3728.769 kb on + strand, within Psyr_3111 at 3728.769 kb on + strand, within Psyr_3111 at 3728.770 kb on - strand, within Psyr_3111 at 3728.770 kb on - strand, within Psyr_3111 at 3728.770 kb on - strand, within Psyr_3111 at 3728.836 kb on + strand, within Psyr_3111 at 3728.837 kb on - strand, within Psyr_3111 at 3728.868 kb on + strand, within Psyr_3111 at 3728.868 kb on + strand, within Psyr_3111 at 3728.869 kb on - strand, within Psyr_3111 at 3728.869 kb on - strand, within Psyr_3111 at 3729.113 kb on + strand at 3729.113 kb on + strand at 3729.114 kb on - strand at 3729.114 kb on - strand at 3729.124 kb on + strand at 3729.124 kb on + strand at 3729.124 kb on + strand at 3729.125 kb on - strand at 3729.125 kb on - strand at 3729.125 kb on - strand at 3729.125 kb on - strand at 3729.147 kb on - strand at 3729.221 kb on + strand at 3729.221 kb on + strand at 3729.221 kb on + strand at 3729.221 kb on + strand at 3729.221 kb on + strand at 3729.221 kb on + strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.230 kb on + strand at 3729.433 kb on - strand, within Psyr_3112 at 3729.683 kb on - strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.718 kb on + strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.719 kb on - strand, within Psyr_3112 at 3729.777 kb on - strand, within Psyr_3112 at 3730.004 kb on + strand, within Psyr_3112 at 3730.013 kb on - strand, within Psyr_3112 at 3730.043 kb on + strand, within Psyr_3112 at 3730.043 kb on + strand, within Psyr_3112 at 3730.044 kb on - strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.048 kb on + strand, within Psyr_3112 at 3730.049 kb on - strand, within Psyr_3112 at 3730.049 kb on - strand, within Psyr_3112 at 3730.049 kb on - strand, within Psyr_3112 at 3730.049 kb on - strand, within Psyr_3112 at 3730.049 kb on - strand, within Psyr_3112 at 3730.049 kb on - strand, within Psyr_3112
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM remove 3,727,296 - Psyr_3109 0.85 +0.3 3,727,336 - Psyr_3109 0.88 +0.8 3,727,512 + +0.8 3,727,512 + -0.6 3,727,515 + +0.9 3,727,515 + -0.5 3,727,516 - +1.8 3,727,516 - +0.6 3,727,540 + -0.9 3,727,540 + -0.8 3,727,540 + +0.4 3,727,540 + +0.5 3,727,540 + -1.3 3,727,541 - -1.8 3,727,541 - +1.6 3,727,561 + +0.8 3,727,561 + +0.3 3,727,561 + +0.4 3,727,561 + +0.1 3,727,561 + +0.3 3,727,562 - -0.2 3,727,562 - +0.8 3,727,562 - -0.4 3,727,653 + -0.2 3,727,654 - -0.0 3,727,677 - -2.5 3,727,691 - +0.2 3,727,693 + +0.0 3,727,693 + -2.1 3,727,693 + +0.8 3,727,693 + -0.7 3,727,694 - -0.3 3,727,694 - -0.4 3,727,694 - -0.4 3,727,694 - +0.2 3,727,694 - +0.2 3,727,714 + +0.6 3,727,715 - -0.3 3,727,733 + -0.9 3,727,734 - -2.8 3,727,734 - +0.4 3,727,785 - Psyr_3110 0.13 -1.7 3,727,886 + Psyr_3110 0.33 +0.5 3,727,886 + Psyr_3110 0.33 +0.5 3,728,024 + Psyr_3110 0.60 +3.4 3,728,025 - Psyr_3110 0.60 -0.5 3,728,095 + Psyr_3110 0.73 +0.4 3,728,195 + -0.9 3,728,317 + -0.8 3,728,769 + Psyr_3111 0.58 -1.0 3,728,769 + Psyr_3111 0.58 +3.6 3,728,770 - Psyr_3111 0.58 -0.8 3,728,770 - Psyr_3111 0.58 -1.8 3,728,770 - Psyr_3111 0.58 +0.2 3,728,836 + Psyr_3111 0.66 -1.6 3,728,837 - Psyr_3111 0.66 -1.5 3,728,868 + Psyr_3111 0.69 -4.0 3,728,868 + Psyr_3111 0.69 -0.2 3,728,869 - Psyr_3111 0.69 -1.1 3,728,869 - Psyr_3111 0.69 +0.4 3,729,113 + +2.6 3,729,113 + +1.3 3,729,114 - -1.6 3,729,114 - -0.2 3,729,124 + -0.5 3,729,124 + +0.0 3,729,124 + +0.2 3,729,125 - -1.4 3,729,125 - +0.5 3,729,125 - +0.1 3,729,125 - -0.7 3,729,147 - +1.0 3,729,221 + +0.2 3,729,221 + -0.8 3,729,221 + +0.4 3,729,221 + -0.2 3,729,221 + -0.9 3,729,221 + +2.4 3,729,222 - +1.8 3,729,222 - +0.6 3,729,222 - -1.2 3,729,222 - -0.6 3,729,222 - -0.7 3,729,230 + -1.5 3,729,433 - Psyr_3112 0.17 -0.1 3,729,683 - Psyr_3112 0.39 +1.2 3,729,718 + Psyr_3112 0.43 +1.1 3,729,718 + Psyr_3112 0.43 +1.0 3,729,718 + Psyr_3112 0.43 +0.5 3,729,718 + Psyr_3112 0.43 +0.6 3,729,718 + Psyr_3112 0.43 -0.2 3,729,718 + Psyr_3112 0.43 +1.1 3,729,718 + Psyr_3112 0.43 +1.2 3,729,718 + Psyr_3112 0.43 +0.1 3,729,719 - Psyr_3112 0.43 +2.8 3,729,719 - Psyr_3112 0.43 +0.5 3,729,719 - Psyr_3112 0.43 -1.2 3,729,719 - Psyr_3112 0.43 -0.4 3,729,719 - Psyr_3112 0.43 +0.8 3,729,719 - Psyr_3112 0.43 -0.4 3,729,719 - Psyr_3112 0.43 -0.4 3,729,719 - Psyr_3112 0.43 -0.1 3,729,777 - Psyr_3112 0.48 +0.5 3,730,004 + Psyr_3112 0.69 -0.2 3,730,013 - Psyr_3112 0.70 -0.9 3,730,043 + Psyr_3112 0.73 -1.3 3,730,043 + Psyr_3112 0.73 +1.4 3,730,044 - Psyr_3112 0.73 +0.8 3,730,048 + Psyr_3112 0.73 -0.2 3,730,048 + Psyr_3112 0.73 +0.5 3,730,048 + Psyr_3112 0.73 -0.7 3,730,048 + Psyr_3112 0.73 -2.4 3,730,048 + Psyr_3112 0.73 +0.8 3,730,048 + Psyr_3112 0.73 +1.4 3,730,048 + Psyr_3112 0.73 -0.5 3,730,048 + Psyr_3112 0.73 -1.4 3,730,048 + Psyr_3112 0.73 -0.4 3,730,048 + Psyr_3112 0.73 +0.3 3,730,048 + Psyr_3112 0.73 +0.4 3,730,048 + Psyr_3112 0.73 +0.0 3,730,049 - Psyr_3112 0.73 +1.1 3,730,049 - Psyr_3112 0.73 -0.7 3,730,049 - Psyr_3112 0.73 -0.5 3,730,049 - Psyr_3112 0.73 -0.2 3,730,049 - Psyr_3112 0.73 -0.1 3,730,049 - Psyr_3112 0.73 -0.1
Or see this region's nucleotide sequence