Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3111

Experiment: KB with Veratrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3109 and Psyr_3110 are separated by 168 nucleotidesPsyr_3110 and Psyr_3111 are separated by 10 nucleotidesPsyr_3111 and Psyr_3112 are separated by 106 nucleotides Psyr_3109: Psyr_3109 - conserved hypothetical protein, at 3,725,843 to 3,727,546 _3109 Psyr_3110: Psyr_3110 - Nucleoside 2-deoxyribosyltransferase, at 3,727,715 to 3,728,233 _3110 Psyr_3111: Psyr_3111 - transcriptional regulator, LysR family, at 3,728,244 to 3,729,146 _3111 Psyr_3112: Psyr_3112 - Putative ammonia monooxygenase, at 3,729,253 to 3,730,341 _3112 Position (kb) 3728 3729 3730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3727.296 kb on - strand, within Psyr_3109at 3727.336 kb on - strand, within Psyr_3109at 3727.512 kb on + strandat 3727.512 kb on + strandat 3727.515 kb on + strandat 3727.515 kb on + strandat 3727.516 kb on - strandat 3727.516 kb on - strandat 3727.540 kb on + strandat 3727.540 kb on + strandat 3727.540 kb on + strandat 3727.540 kb on + strandat 3727.540 kb on + strandat 3727.541 kb on - strandat 3727.541 kb on - strandat 3727.561 kb on + strandat 3727.561 kb on + strandat 3727.561 kb on + strandat 3727.561 kb on + strandat 3727.561 kb on + strandat 3727.562 kb on - strandat 3727.562 kb on - strandat 3727.562 kb on - strandat 3727.653 kb on + strandat 3727.654 kb on - strandat 3727.677 kb on - strandat 3727.691 kb on - strandat 3727.693 kb on + strandat 3727.693 kb on + strandat 3727.693 kb on + strandat 3727.693 kb on + strandat 3727.694 kb on - strandat 3727.694 kb on - strandat 3727.694 kb on - strandat 3727.694 kb on - strandat 3727.694 kb on - strandat 3727.714 kb on + strandat 3727.715 kb on - strandat 3727.733 kb on + strandat 3727.734 kb on - strandat 3727.734 kb on - strandat 3727.785 kb on - strand, within Psyr_3110at 3727.886 kb on + strand, within Psyr_3110at 3727.886 kb on + strand, within Psyr_3110at 3728.024 kb on + strand, within Psyr_3110at 3728.025 kb on - strand, within Psyr_3110at 3728.095 kb on + strand, within Psyr_3110at 3728.195 kb on + strandat 3728.317 kb on + strandat 3728.769 kb on + strand, within Psyr_3111at 3728.769 kb on + strand, within Psyr_3111at 3728.770 kb on - strand, within Psyr_3111at 3728.770 kb on - strand, within Psyr_3111at 3728.770 kb on - strand, within Psyr_3111at 3728.836 kb on + strand, within Psyr_3111at 3728.837 kb on - strand, within Psyr_3111at 3728.868 kb on + strand, within Psyr_3111at 3728.868 kb on + strand, within Psyr_3111at 3728.869 kb on - strand, within Psyr_3111at 3728.869 kb on - strand, within Psyr_3111at 3729.113 kb on + strandat 3729.113 kb on + strandat 3729.114 kb on - strandat 3729.114 kb on - strandat 3729.124 kb on + strandat 3729.124 kb on + strandat 3729.124 kb on + strandat 3729.125 kb on - strandat 3729.125 kb on - strandat 3729.125 kb on - strandat 3729.125 kb on - strandat 3729.147 kb on - strandat 3729.221 kb on + strandat 3729.221 kb on + strandat 3729.221 kb on + strandat 3729.221 kb on + strandat 3729.221 kb on + strandat 3729.221 kb on + strandat 3729.222 kb on - strandat 3729.222 kb on - strandat 3729.222 kb on - strandat 3729.222 kb on - strandat 3729.222 kb on - strandat 3729.230 kb on + strandat 3729.433 kb on - strand, within Psyr_3112at 3729.683 kb on - strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.718 kb on + strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.719 kb on - strand, within Psyr_3112at 3729.777 kb on - strand, within Psyr_3112at 3730.004 kb on + strand, within Psyr_3112at 3730.013 kb on - strand, within Psyr_3112at 3730.043 kb on + strand, within Psyr_3112at 3730.043 kb on + strand, within Psyr_3112at 3730.044 kb on - strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.048 kb on + strand, within Psyr_3112at 3730.049 kb on - strand, within Psyr_3112at 3730.049 kb on - strand, within Psyr_3112at 3730.049 kb on - strand, within Psyr_3112at 3730.049 kb on - strand, within Psyr_3112at 3730.049 kb on - strand, within Psyr_3112at 3730.049 kb on - strand, within Psyr_3112

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM
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3,727,296 - Psyr_3109 0.85 +0.3
3,727,336 - Psyr_3109 0.88 +0.8
3,727,512 + +0.8
3,727,512 + -0.6
3,727,515 + +0.9
3,727,515 + -0.5
3,727,516 - +1.8
3,727,516 - +0.6
3,727,540 + -0.9
3,727,540 + -0.8
3,727,540 + +0.4
3,727,540 + +0.5
3,727,540 + -1.3
3,727,541 - -1.8
3,727,541 - +1.6
3,727,561 + +0.8
3,727,561 + +0.3
3,727,561 + +0.4
3,727,561 + +0.1
3,727,561 + +0.3
3,727,562 - -0.2
3,727,562 - +0.8
3,727,562 - -0.4
3,727,653 + -0.2
3,727,654 - -0.0
3,727,677 - -2.5
3,727,691 - +0.2
3,727,693 + +0.0
3,727,693 + -2.1
3,727,693 + +0.8
3,727,693 + -0.7
3,727,694 - -0.3
3,727,694 - -0.4
3,727,694 - -0.4
3,727,694 - +0.2
3,727,694 - +0.2
3,727,714 + +0.6
3,727,715 - -0.3
3,727,733 + -0.9
3,727,734 - -2.8
3,727,734 - +0.4
3,727,785 - Psyr_3110 0.13 -1.7
3,727,886 + Psyr_3110 0.33 +0.5
3,727,886 + Psyr_3110 0.33 +0.5
3,728,024 + Psyr_3110 0.60 +3.4
3,728,025 - Psyr_3110 0.60 -0.5
3,728,095 + Psyr_3110 0.73 +0.4
3,728,195 + -0.9
3,728,317 + -0.8
3,728,769 + Psyr_3111 0.58 -1.0
3,728,769 + Psyr_3111 0.58 +3.6
3,728,770 - Psyr_3111 0.58 -0.8
3,728,770 - Psyr_3111 0.58 -1.8
3,728,770 - Psyr_3111 0.58 +0.2
3,728,836 + Psyr_3111 0.66 -1.6
3,728,837 - Psyr_3111 0.66 -1.5
3,728,868 + Psyr_3111 0.69 -4.0
3,728,868 + Psyr_3111 0.69 -0.2
3,728,869 - Psyr_3111 0.69 -1.1
3,728,869 - Psyr_3111 0.69 +0.4
3,729,113 + +2.6
3,729,113 + +1.3
3,729,114 - -1.6
3,729,114 - -0.2
3,729,124 + -0.5
3,729,124 + +0.0
3,729,124 + +0.2
3,729,125 - -1.4
3,729,125 - +0.5
3,729,125 - +0.1
3,729,125 - -0.7
3,729,147 - +1.0
3,729,221 + +0.2
3,729,221 + -0.8
3,729,221 + +0.4
3,729,221 + -0.2
3,729,221 + -0.9
3,729,221 + +2.4
3,729,222 - +1.8
3,729,222 - +0.6
3,729,222 - -1.2
3,729,222 - -0.6
3,729,222 - -0.7
3,729,230 + -1.5
3,729,433 - Psyr_3112 0.17 -0.1
3,729,683 - Psyr_3112 0.39 +1.2
3,729,718 + Psyr_3112 0.43 +1.1
3,729,718 + Psyr_3112 0.43 +1.0
3,729,718 + Psyr_3112 0.43 +0.5
3,729,718 + Psyr_3112 0.43 +0.6
3,729,718 + Psyr_3112 0.43 -0.2
3,729,718 + Psyr_3112 0.43 +1.1
3,729,718 + Psyr_3112 0.43 +1.2
3,729,718 + Psyr_3112 0.43 +0.1
3,729,719 - Psyr_3112 0.43 +2.8
3,729,719 - Psyr_3112 0.43 +0.5
3,729,719 - Psyr_3112 0.43 -1.2
3,729,719 - Psyr_3112 0.43 -0.4
3,729,719 - Psyr_3112 0.43 +0.8
3,729,719 - Psyr_3112 0.43 -0.4
3,729,719 - Psyr_3112 0.43 -0.4
3,729,719 - Psyr_3112 0.43 -0.1
3,729,777 - Psyr_3112 0.48 +0.5
3,730,004 + Psyr_3112 0.69 -0.2
3,730,013 - Psyr_3112 0.70 -0.9
3,730,043 + Psyr_3112 0.73 -1.3
3,730,043 + Psyr_3112 0.73 +1.4
3,730,044 - Psyr_3112 0.73 +0.8
3,730,048 + Psyr_3112 0.73 -0.2
3,730,048 + Psyr_3112 0.73 +0.5
3,730,048 + Psyr_3112 0.73 -0.7
3,730,048 + Psyr_3112 0.73 -2.4
3,730,048 + Psyr_3112 0.73 +0.8
3,730,048 + Psyr_3112 0.73 +1.4
3,730,048 + Psyr_3112 0.73 -0.5
3,730,048 + Psyr_3112 0.73 -1.4
3,730,048 + Psyr_3112 0.73 -0.4
3,730,048 + Psyr_3112 0.73 +0.3
3,730,048 + Psyr_3112 0.73 +0.4
3,730,048 + Psyr_3112 0.73 +0.0
3,730,049 - Psyr_3112 0.73 +1.1
3,730,049 - Psyr_3112 0.73 -0.7
3,730,049 - Psyr_3112 0.73 -0.5
3,730,049 - Psyr_3112 0.73 -0.2
3,730,049 - Psyr_3112 0.73 -0.1
3,730,049 - Psyr_3112 0.73 -0.1

Or see this region's nucleotide sequence