Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2951

Experiment: KB with Veratrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2950 and Psyr_2951 are separated by 126 nucleotidesPsyr_2951 and Psyr_2952 are separated by 110 nucleotidesPsyr_2952 and Psyr_2953 are separated by 30 nucleotides Psyr_2950: Psyr_2950 - putative hydrolase signal peptide protein, at 3,538,725 to 3,539,672 _2950 Psyr_2951: Psyr_2951 - transcriptional regulator, LysR family, at 3,539,799 to 3,540,698 _2951 Psyr_2952: Psyr_2952 - NADP oxidoreductase, coenzyme F420-dependent, at 3,540,809 to 3,541,438 _2952 Psyr_2953: Psyr_2953 - Catalytic LigB subunit of aromatic ring-opening dioxygenase, at 3,541,469 to 3,542,302 _2953 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3538.814 kb on + strandat 3538.815 kb on - strandat 3538.815 kb on - strandat 3538.827 kb on - strand, within Psyr_2950at 3538.868 kb on + strand, within Psyr_2950at 3538.944 kb on + strand, within Psyr_2950at 3538.945 kb on - strand, within Psyr_2950at 3538.977 kb on + strand, within Psyr_2950at 3538.978 kb on - strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3539.145 kb on + strand, within Psyr_2950at 3539.146 kb on - strand, within Psyr_2950at 3539.212 kb on - strand, within Psyr_2950at 3539.212 kb on - strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.293 kb on - strand, within Psyr_2950at 3539.293 kb on - strand, within Psyr_2950at 3539.426 kb on + strand, within Psyr_2950at 3539.427 kb on - strand, within Psyr_2950at 3539.427 kb on - strand, within Psyr_2950at 3539.520 kb on + strand, within Psyr_2950at 3539.586 kb on + strandat 3539.586 kb on + strandat 3539.587 kb on - strandat 3539.587 kb on - strandat 3539.754 kb on + strandat 3539.770 kb on + strandat 3539.770 kb on + strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.771 kb on - strandat 3539.773 kb on - strandat 3539.856 kb on + strandat 3539.857 kb on - strandat 3539.857 kb on - strandat 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.897 kb on - strand, within Psyr_2951at 3539.931 kb on + strand, within Psyr_2951at 3539.931 kb on + strand, within Psyr_2951at 3539.955 kb on + strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3539.973 kb on - strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.038 kb on + strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.039 kb on - strand, within Psyr_2951at 3540.218 kb on + strand, within Psyr_2951at 3540.251 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.284 kb on + strand, within Psyr_2951at 3540.285 kb on - strand, within Psyr_2951at 3540.502 kb on + strand, within Psyr_2951at 3540.502 kb on + strand, within Psyr_2951at 3540.762 kb on - strandat 3540.762 kb on - strandat 3540.762 kb on - strandat 3540.764 kb on - strandat 3540.987 kb on + strand, within Psyr_2952at 3540.987 kb on + strand, within Psyr_2952at 3540.987 kb on + strand, within Psyr_2952at 3540.988 kb on - strand, within Psyr_2952at 3540.988 kb on - strand, within Psyr_2952at 3541.054 kb on + strand, within Psyr_2952at 3541.094 kb on + strand, within Psyr_2952at 3541.094 kb on + strand, within Psyr_2952at 3541.094 kb on + strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.095 kb on - strand, within Psyr_2952at 3541.245 kb on + strand, within Psyr_2952at 3541.246 kb on - strand, within Psyr_2952at 3541.379 kb on + strandat 3541.379 kb on + strandat 3541.379 kb on + strandat 3541.380 kb on - strandat 3541.380 kb on - strandat 3541.436 kb on + strandat 3541.436 kb on + strandat 3541.436 kb on + strandat 3541.437 kb on - strandat 3541.437 kb on - strandat 3541.694 kb on + strand, within Psyr_2953at 3541.694 kb on + strand, within Psyr_2953at 3541.694 kb on + strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.695 kb on - strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.696 kb on + strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953at 3541.697 kb on - strand, within Psyr_2953

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM
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3,538,814 + -1.9
3,538,815 - -1.6
3,538,815 - -0.5
3,538,827 - Psyr_2950 0.11 +0.6
3,538,868 + Psyr_2950 0.15 -0.6
3,538,944 + Psyr_2950 0.23 +0.7
3,538,945 - Psyr_2950 0.23 +1.1
3,538,977 + Psyr_2950 0.27 +0.2
3,538,978 - Psyr_2950 0.27 +3.7
3,538,986 + Psyr_2950 0.28 -0.3
3,538,986 + Psyr_2950 0.28 -0.4
3,538,986 + Psyr_2950 0.28 +0.7
3,538,986 + Psyr_2950 0.28 -0.7
3,538,986 + Psyr_2950 0.28 +0.5
3,538,986 + Psyr_2950 0.28 -0.5
3,538,986 + Psyr_2950 0.28 -0.1
3,538,986 + Psyr_2950 0.28 +1.3
3,538,986 + Psyr_2950 0.28 +0.7
3,538,986 + Psyr_2950 0.28 +0.1
3,538,986 + Psyr_2950 0.28 +0.7
3,538,986 + Psyr_2950 0.28 -2.3
3,538,986 + Psyr_2950 0.28 -0.5
3,538,986 + Psyr_2950 0.28 -0.2
3,538,987 - Psyr_2950 0.28 +0.7
3,538,987 - Psyr_2950 0.28 +1.7
3,538,987 - Psyr_2950 0.28 -0.7
3,538,987 - Psyr_2950 0.28 +1.7
3,538,987 - Psyr_2950 0.28 +0.9
3,538,987 - Psyr_2950 0.28 -0.4
3,538,987 - Psyr_2950 0.28 -0.6
3,538,987 - Psyr_2950 0.28 +1.1
3,538,987 - Psyr_2950 0.28 +0.4
3,538,987 - Psyr_2950 0.28 -0.9
3,538,987 - Psyr_2950 0.28 +0.7
3,538,987 - Psyr_2950 0.28 +0.8
3,538,987 - Psyr_2950 0.28 -1.1
3,538,987 - Psyr_2950 0.28 -0.3
3,538,987 - Psyr_2950 0.28 +0.2
3,538,987 - Psyr_2950 0.28 +2.7
3,539,145 + Psyr_2950 0.44 +0.2
3,539,146 - Psyr_2950 0.44 +1.7
3,539,212 - Psyr_2950 0.51 -0.7
3,539,212 - Psyr_2950 0.51 -0.1
3,539,292 + Psyr_2950 0.60 -0.2
3,539,292 + Psyr_2950 0.60 +0.3
3,539,292 + Psyr_2950 0.60 -0.1
3,539,293 - Psyr_2950 0.60 +0.4
3,539,293 - Psyr_2950 0.60 -0.1
3,539,426 + Psyr_2950 0.74 -0.6
3,539,427 - Psyr_2950 0.74 -0.1
3,539,427 - Psyr_2950 0.74 -1.3
3,539,520 + Psyr_2950 0.84 +0.1
3,539,586 + -1.1
3,539,586 + -0.1
3,539,587 - -0.7
3,539,587 - -0.6
3,539,754 + +0.4
3,539,770 + -0.8
3,539,770 + +0.6
3,539,771 - +0.2
3,539,771 - -0.5
3,539,771 - +0.6
3,539,771 - -0.4
3,539,771 - -0.6
3,539,771 - -2.6
3,539,773 - +1.9
3,539,856 + -0.1
3,539,857 - +0.2
3,539,857 - -0.5
3,539,897 - Psyr_2951 0.11 -2.4
3,539,897 - Psyr_2951 0.11 -0.1
3,539,897 - Psyr_2951 0.11 +0.6
3,539,897 - Psyr_2951 0.11 -0.4
3,539,897 - Psyr_2951 0.11 +0.3
3,539,931 + Psyr_2951 0.15 -0.5
3,539,931 + Psyr_2951 0.15 +0.2
3,539,955 + Psyr_2951 0.17 +1.3
3,539,973 - Psyr_2951 0.19 -0.3
3,539,973 - Psyr_2951 0.19 +0.1
3,539,973 - Psyr_2951 0.19 -0.5
3,540,038 + Psyr_2951 0.27 -0.1
3,540,038 + Psyr_2951 0.27 -1.8
3,540,038 + Psyr_2951 0.27 -1.6
3,540,038 + Psyr_2951 0.27 +3.7
3,540,038 + Psyr_2951 0.27 -1.0
3,540,039 - Psyr_2951 0.27 +0.6
3,540,039 - Psyr_2951 0.27 +1.4
3,540,039 - Psyr_2951 0.27 +1.4
3,540,039 - Psyr_2951 0.27 +2.5
3,540,039 - Psyr_2951 0.27 -0.1
3,540,039 - Psyr_2951 0.27 +1.6
3,540,039 - Psyr_2951 0.27 +1.1
3,540,218 + Psyr_2951 0.47 +1.9
3,540,251 + Psyr_2951 0.50 -0.3
3,540,284 + Psyr_2951 0.54 +1.5
3,540,284 + Psyr_2951 0.54 +0.6
3,540,284 + Psyr_2951 0.54 -0.9
3,540,285 - Psyr_2951 0.54 +0.5
3,540,502 + Psyr_2951 0.78 +0.7
3,540,502 + Psyr_2951 0.78 +0.5
3,540,762 - +0.8
3,540,762 - -0.9
3,540,762 - +0.7
3,540,764 - +0.1
3,540,987 + Psyr_2952 0.28 -0.8
3,540,987 + Psyr_2952 0.28 +0.9
3,540,987 + Psyr_2952 0.28 +0.0
3,540,988 - Psyr_2952 0.28 -0.1
3,540,988 - Psyr_2952 0.28 -0.3
3,541,054 + Psyr_2952 0.39 -1.9
3,541,094 + Psyr_2952 0.45 -0.6
3,541,094 + Psyr_2952 0.45 -0.4
3,541,094 + Psyr_2952 0.45 -0.1
3,541,095 - Psyr_2952 0.45 +0.2
3,541,095 - Psyr_2952 0.45 +1.9
3,541,095 - Psyr_2952 0.45 +0.0
3,541,095 - Psyr_2952 0.45 -0.3
3,541,095 - Psyr_2952 0.45 -0.4
3,541,095 - Psyr_2952 0.45 -0.8
3,541,245 + Psyr_2952 0.69 -1.4
3,541,246 - Psyr_2952 0.69 +0.4
3,541,379 + -1.3
3,541,379 + -1.4
3,541,379 + +0.4
3,541,380 - -0.4
3,541,380 - -0.5
3,541,436 + -0.8
3,541,436 + +1.7
3,541,436 + +0.7
3,541,437 - -0.5
3,541,437 - +3.4
3,541,694 + Psyr_2953 0.27 -1.2
3,541,694 + Psyr_2953 0.27 -0.3
3,541,694 + Psyr_2953 0.27 -0.2
3,541,695 - Psyr_2953 0.27 -1.2
3,541,695 - Psyr_2953 0.27 +0.1
3,541,695 - Psyr_2953 0.27 +0.7
3,541,695 - Psyr_2953 0.27 -0.3
3,541,695 - Psyr_2953 0.27 -1.8
3,541,696 + Psyr_2953 0.27 +0.4
3,541,696 + Psyr_2953 0.27 +1.7
3,541,696 + Psyr_2953 0.27 +2.0
3,541,696 + Psyr_2953 0.27 +0.2
3,541,697 - Psyr_2953 0.27 +1.5
3,541,697 - Psyr_2953 0.27 +0.5
3,541,697 - Psyr_2953 0.27 -0.5
3,541,697 - Psyr_2953 0.27 -2.1

Or see this region's nucleotide sequence