Experiment: KB with Veratrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1548 and Psyr_1549 are separated by 18 nucleotides Psyr_1549 and Psyr_1550 are separated by 0 nucleotides Psyr_1550 and Psyr_1551 are separated by 28 nucleotides
Psyr_1548: Psyr_1548 - dihydrodipicolinate synthase, at 1,741,344 to 1,742,222
_1548
Psyr_1549: Psyr_1549 - lipoprotein, putative, at 1,742,241 to 1,743,359
_1549
Psyr_1550: Psyr_1550 - Beta-lactamase-like protein, at 1,743,360 to 1,744,118
_1550
Psyr_1551: Psyr_1551 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,744,147 to 1,744,857
_1551
Position (kb) 1742
1743
1744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.306 kb on + strand at 1742.220 kb on + strand at 1742.220 kb on + strand at 1742.220 kb on + strand at 1742.232 kb on + strand at 1742.232 kb on + strand at 1742.232 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.276 kb on + strand at 1742.277 kb on - strand at 1742.277 kb on - strand at 1742.279 kb on + strand at 1742.279 kb on + strand at 1742.325 kb on + strand at 1742.349 kb on + strand at 1742.604 kb on + strand, within Psyr_1549 at 1742.604 kb on + strand, within Psyr_1549 at 1742.799 kb on + strand, within Psyr_1549 at 1742.799 kb on + strand, within Psyr_1549 at 1742.799 kb on + strand, within Psyr_1549 at 1742.800 kb on - strand, within Psyr_1549 at 1742.800 kb on - strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.940 kb on - strand, within Psyr_1549 at 1742.964 kb on + strand, within Psyr_1549 at 1742.964 kb on + strand, within Psyr_1549 at 1743.120 kb on + strand, within Psyr_1549 at 1743.120 kb on + strand, within Psyr_1549 at 1743.120 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.124 kb on - strand, within Psyr_1549 at 1743.124 kb on - strand, within Psyr_1549 at 1743.234 kb on + strand, within Psyr_1549 at 1743.357 kb on + strand at 1743.357 kb on + strand at 1743.422 kb on + strand at 1743.423 kb on - strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.430 kb on + strand at 1743.430 kb on + strand at 1743.430 kb on + strand at 1743.431 kb on - strand at 1743.431 kb on - strand at 1743.431 kb on - strand at 1743.514 kb on + strand, within Psyr_1550 at 1743.514 kb on + strand, within Psyr_1550 at 1743.514 kb on + strand, within Psyr_1550 at 1743.573 kb on + strand, within Psyr_1550 at 1743.574 kb on - strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.783 kb on + strand, within Psyr_1550 at 1743.783 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1744.109 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM remove 1,741,286 + -0.9 1,741,286 + -1.0 1,741,286 + -1.7 1,741,286 + +2.6 1,741,306 + -0.9 1,742,220 + -1.5 1,742,220 + +0.7 1,742,220 + +1.0 1,742,232 + -1.3 1,742,232 + -2.0 1,742,232 + -0.6 1,742,276 + +1.3 1,742,276 + -0.8 1,742,276 + -0.3 1,742,276 + +2.6 1,742,276 + -1.4 1,742,276 + +0.8 1,742,277 - -2.2 1,742,277 - +0.4 1,742,279 + -3.3 1,742,279 + -0.6 1,742,325 + -1.0 1,742,349 + -0.4 1,742,604 + Psyr_1549 0.32 -1.3 1,742,604 + Psyr_1549 0.32 +0.4 1,742,799 + Psyr_1549 0.50 +0.1 1,742,799 + Psyr_1549 0.50 +1.0 1,742,799 + Psyr_1549 0.50 -1.0 1,742,800 - Psyr_1549 0.50 +1.0 1,742,800 - Psyr_1549 0.50 -1.0 1,742,939 + Psyr_1549 0.62 -1.7 1,742,939 + Psyr_1549 0.62 +0.4 1,742,939 + Psyr_1549 0.62 -0.0 1,742,940 - Psyr_1549 0.62 -2.2 1,742,964 + Psyr_1549 0.65 -0.3 1,742,964 + Psyr_1549 0.65 -1.0 1,743,120 + Psyr_1549 0.79 -0.0 1,743,120 + Psyr_1549 0.79 -1.3 1,743,120 + Psyr_1549 0.79 -1.8 1,743,123 + Psyr_1549 0.79 -0.6 1,743,123 + Psyr_1549 0.79 +1.0 1,743,123 + Psyr_1549 0.79 +1.4 1,743,123 + Psyr_1549 0.79 -0.8 1,743,123 + Psyr_1549 0.79 -1.8 1,743,123 + Psyr_1549 0.79 -0.9 1,743,123 + Psyr_1549 0.79 +2.6 1,743,123 + Psyr_1549 0.79 -0.9 1,743,123 + Psyr_1549 0.79 -1.0 1,743,123 + Psyr_1549 0.79 +0.4 1,743,124 - Psyr_1549 0.79 -0.0 1,743,124 - Psyr_1549 0.79 -1.1 1,743,234 + Psyr_1549 0.89 -2.2 1,743,357 + -0.8 1,743,357 + +1.0 1,743,422 + -0.3 1,743,423 - -1.6 1,743,426 + -1.2 1,743,426 + +0.3 1,743,426 + -0.5 1,743,426 + +0.2 1,743,426 + -0.6 1,743,426 + +0.3 1,743,426 + +0.6 1,743,426 + -0.2 1,743,426 + -1.8 1,743,426 + +2.2 1,743,426 + -0.5 1,743,426 + -0.0 1,743,426 + +0.5 1,743,426 + +0.8 1,743,426 + +1.0 1,743,426 + +2.0 1,743,426 + +0.1 1,743,426 + +0.6 1,743,426 + +0.4 1,743,426 + +3.0 1,743,426 + +0.2 1,743,427 - -0.0 1,743,427 - -0.4 1,743,427 - -0.6 1,743,427 - +1.0 1,743,427 - +0.8 1,743,430 + -1.8 1,743,430 + +0.2 1,743,430 + +0.3 1,743,431 - +2.0 1,743,431 - +0.4 1,743,431 - +2.0 1,743,514 + Psyr_1550 0.20 +0.1 1,743,514 + Psyr_1550 0.20 -0.3 1,743,514 + Psyr_1550 0.20 -0.4 1,743,573 + Psyr_1550 0.28 +0.0 1,743,574 - Psyr_1550 0.28 +1.1 1,743,588 + Psyr_1550 0.30 +3.0 1,743,588 + Psyr_1550 0.30 -0.3 1,743,783 + Psyr_1550 0.56 +1.6 1,743,783 + Psyr_1550 0.56 -0.3 1,743,796 + Psyr_1550 0.57 +0.2 1,743,796 + Psyr_1550 0.57 +1.7 1,743,796 + Psyr_1550 0.57 -0.8 1,743,796 + Psyr_1550 0.57 +1.5 1,743,796 + Psyr_1550 0.57 -0.2 1,743,799 + Psyr_1550 0.58 +0.7 1,743,799 + Psyr_1550 0.58 +0.5 1,743,799 + Psyr_1550 0.58 +0.8 1,743,799 + Psyr_1550 0.58 +0.4 1,744,109 + -0.6 1,744,125 + +0.1 1,744,125 + +1.0 1,744,125 + -0.4 1,744,125 + +0.7 1,744,125 + -0.2 1,744,129 + +0.2 1,744,129 + +0.2 1,744,129 + +0.2 1,744,129 + -0.0
Or see this region's nucleotide sequence