Experiment: KB with Veratrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0544 and Psyr_0545 are separated by 431 nucleotides Psyr_0545 and Psyr_0546 overlap by 32 nucleotides Psyr_0546 and Psyr_0547 are separated by 177 nucleotides
Psyr_0544: Psyr_0544 - hydroxymethylpyrimidine synthase, at 615,173 to 617,062
_0544
Psyr_0545: Psyr_0545 - Permease for cytosine/purines, uracil, thiamine, allantoin, at 617,494 to 618,783
_0545
Psyr_0546: Psyr_0546 - lipoprotein, putative, at 618,752 to 619,498
_0546
Psyr_0547: Psyr_0547 - Conserved hypothetical protein 52, at 619,676 to 620,323
_0547
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 616.532 kb on + strand, within Psyr_0544 at 616.532 kb on + strand, within Psyr_0544 at 616.533 kb on - strand, within Psyr_0544 at 616.533 kb on - strand, within Psyr_0544 at 616.637 kb on + strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.847 kb on + strand, within Psyr_0544 at 616.953 kb on - strand at 617.038 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.081 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.117 kb on + strand at 617.117 kb on + strand at 617.161 kb on - strand at 617.161 kb on - strand at 617.172 kb on + strand at 617.173 kb on - strand at 617.173 kb on - strand at 617.173 kb on - strand at 617.189 kb on + strand at 617.189 kb on + strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.371 kb on + strand at 617.371 kb on + strand at 617.371 kb on + strand at 617.402 kb on - strand at 617.499 kb on + strand at 617.499 kb on + strand at 617.499 kb on + strand at 617.500 kb on - strand at 617.500 kb on - strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 618.169 kb on + strand, within Psyr_0545 at 618.265 kb on + strand, within Psyr_0545 at 618.266 kb on - strand, within Psyr_0545 at 618.469 kb on - strand, within Psyr_0545 at 618.469 kb on - strand, within Psyr_0545 at 618.502 kb on + strand, within Psyr_0545 at 618.658 kb on + strand at 618.659 kb on - strand at 618.659 kb on - strand at 618.659 kb on - strand at 618.804 kb on + strand at 618.862 kb on - strand, within Psyr_0546 at 618.882 kb on + strand, within Psyr_0546 at 618.883 kb on - strand, within Psyr_0546 at 618.883 kb on - strand, within Psyr_0546 at 619.065 kb on + strand, within Psyr_0546 at 619.065 kb on + strand, within Psyr_0546 at 619.066 kb on - strand, within Psyr_0546 at 619.066 kb on - strand, within Psyr_0546 at 619.066 kb on - strand, within Psyr_0546 at 619.066 kb on - strand, within Psyr_0546 at 619.137 kb on - strand, within Psyr_0546 at 619.142 kb on - strand, within Psyr_0546 at 619.160 kb on + strand, within Psyr_0546 at 619.176 kb on + strand, within Psyr_0546 at 619.177 kb on - strand, within Psyr_0546 at 619.177 kb on - strand, within Psyr_0546 at 619.177 kb on - strand, within Psyr_0546 at 619.221 kb on + strand, within Psyr_0546 at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.561 kb on + strand at 619.562 kb on - strand at 619.562 kb on - strand at 619.594 kb on - strand at 619.620 kb on - strand at 619.620 kb on - strand at 619.664 kb on + strand at 619.750 kb on - strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.780 kb on + strand, within Psyr_0547 at 619.780 kb on + strand, within Psyr_0547 at 619.780 kb on + strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Veratrine 10 mM remove 616,532 + Psyr_0544 0.72 +0.5 616,532 + Psyr_0544 0.72 +0.1 616,533 - Psyr_0544 0.72 -2.4 616,533 - Psyr_0544 0.72 -0.7 616,637 + Psyr_0544 0.77 -0.7 616,638 - Psyr_0544 0.78 -0.8 616,638 - Psyr_0544 0.78 +0.9 616,638 - Psyr_0544 0.78 +0.4 616,703 + Psyr_0544 0.81 +0.0 616,703 + Psyr_0544 0.81 +0.6 616,703 + Psyr_0544 0.81 -1.0 616,703 + Psyr_0544 0.81 -2.8 616,703 + Psyr_0544 0.81 -1.4 616,703 + Psyr_0544 0.81 +0.5 616,703 + Psyr_0544 0.81 -0.9 616,704 - Psyr_0544 0.81 +0.7 616,704 - Psyr_0544 0.81 +0.1 616,704 - Psyr_0544 0.81 +0.2 616,704 - Psyr_0544 0.81 +1.2 616,847 + Psyr_0544 0.89 -0.0 616,953 - +0.3 617,038 + +0.2 617,048 + +0.7 617,048 + -0.5 617,048 + -0.5 617,049 - -1.0 617,049 - -0.5 617,049 - +0.3 617,049 - +0.6 617,049 - +0.6 617,060 + -1.3 617,060 + +0.4 617,060 + -0.2 617,060 + -0.2 617,081 + +1.0 617,083 + -0.7 617,083 + +0.8 617,083 + +2.1 617,083 + -1.3 617,083 + +0.7 617,083 + -2.2 617,083 + +1.3 617,083 + -0.0 617,083 + +2.4 617,083 + +0.2 617,083 + +1.1 617,084 - -1.2 617,084 - -1.8 617,084 - +0.5 617,084 - +1.0 617,084 - -0.7 617,084 - -1.1 617,084 - -1.3 617,084 - -2.1 617,117 + -0.0 617,117 + +1.4 617,161 - +1.2 617,161 - +0.9 617,172 + -0.1 617,173 - -1.3 617,173 - -0.1 617,173 - -0.9 617,189 + +0.4 617,189 + +1.9 617,190 - -2.3 617,190 - +0.1 617,190 - +0.1 617,190 - +1.1 617,190 - -0.0 617,371 + -1.0 617,371 + +1.1 617,371 + -0.8 617,402 - -0.8 617,499 + -1.6 617,499 + +0.3 617,499 + +1.5 617,500 - -2.3 617,500 - +1.6 617,512 + +0.6 617,512 + -0.2 617,512 + +2.4 617,512 + -1.0 617,513 - +0.5 617,513 - +1.6 617,513 - +0.7 617,513 - +1.6 617,513 - -0.3 617,513 - +0.1 618,169 + Psyr_0545 0.52 -2.4 618,265 + Psyr_0545 0.60 -0.2 618,266 - Psyr_0545 0.60 -1.3 618,469 - Psyr_0545 0.76 -0.3 618,469 - Psyr_0545 0.76 -0.1 618,502 + Psyr_0545 0.78 -0.8 618,658 + +1.0 618,659 - -1.7 618,659 - +0.3 618,659 - +1.9 618,804 + -0.2 618,862 - Psyr_0546 0.15 +0.7 618,882 + Psyr_0546 0.17 +1.9 618,883 - Psyr_0546 0.18 -0.3 618,883 - Psyr_0546 0.18 +1.0 619,065 + Psyr_0546 0.42 +1.9 619,065 + Psyr_0546 0.42 +0.0 619,066 - Psyr_0546 0.42 -2.1 619,066 - Psyr_0546 0.42 +1.2 619,066 - Psyr_0546 0.42 -1.0 619,066 - Psyr_0546 0.42 -0.8 619,137 - Psyr_0546 0.52 +0.8 619,142 - Psyr_0546 0.52 +1.2 619,160 + Psyr_0546 0.55 +0.2 619,176 + Psyr_0546 0.57 +2.4 619,177 - Psyr_0546 0.57 +0.3 619,177 - Psyr_0546 0.57 +0.1 619,177 - Psyr_0546 0.57 -0.2 619,221 + Psyr_0546 0.63 -0.5 619,537 + -0.5 619,537 + +3.4 619,537 + -0.1 619,537 + -0.9 619,537 + +0.9 619,537 + +3.0 619,537 + +0.1 619,537 + +1.3 619,537 + +0.7 619,537 + +0.4 619,537 + -1.0 619,537 + +0.7 619,538 - -0.1 619,538 - +1.3 619,538 - +0.3 619,538 - +1.0 619,538 - -1.1 619,538 - +1.5 619,541 + -1.8 619,541 + -0.1 619,541 + -0.9 619,541 + +2.6 619,541 + +0.5 619,541 + +0.5 619,541 + +0.7 619,542 - +1.0 619,542 - -0.1 619,542 - -0.4 619,542 - +0.9 619,542 - -0.5 619,542 - +0.1 619,542 - +0.2 619,542 - +0.9 619,542 - +0.4 619,561 + -0.5 619,562 - +0.1 619,562 - +3.2 619,594 - -1.7 619,620 - -2.6 619,620 - +0.6 619,664 + -0.2 619,750 - Psyr_0547 0.11 -0.7 619,778 + Psyr_0547 0.16 +2.0 619,778 + Psyr_0547 0.16 +4.2 619,778 + Psyr_0547 0.16 +0.6 619,778 + Psyr_0547 0.16 +0.5 619,778 + Psyr_0547 0.16 +0.1 619,778 + Psyr_0547 0.16 +1.0 619,778 + Psyr_0547 0.16 +0.0 619,778 + Psyr_0547 0.16 +0.4 619,778 + Psyr_0547 0.16 +0.7 619,778 + Psyr_0547 0.16 +0.2 619,778 + Psyr_0547 0.16 +0.0 619,779 - Psyr_0547 0.16 -0.8 619,779 - Psyr_0547 0.16 +1.0 619,779 - Psyr_0547 0.16 +0.9 619,779 - Psyr_0547 0.16 +0.0 619,779 - Psyr_0547 0.16 -1.2 619,779 - Psyr_0547 0.16 -1.0 619,779 - Psyr_0547 0.16 -1.1 619,780 + Psyr_0547 0.16 -0.9 619,780 + Psyr_0547 0.16 +1.5 619,780 + Psyr_0547 0.16 +0.6 619,781 - Psyr_0547 0.16 +0.7 619,781 - Psyr_0547 0.16 +1.0 619,781 - Psyr_0547 0.16 -1.2 619,781 - Psyr_0547 0.16 -0.3 619,781 - Psyr_0547 0.16 -0.8
Or see this region's nucleotide sequence