Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11770

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
2,609,685	+		PFLU_RS11760	0.79	+0.4
2,609,685	+		PFLU_RS11760	0.79	+2.3
2,609,775	+		PFLU_RS11760	0.89	+1.3
2,609,775	+		PFLU_RS11760	0.89	+0.5
2,609,776	-		PFLU_RS11760	0.89	+1.1
2,609,776	-		PFLU_RS11760	0.89	+2.6
2,610,001	+				-0.8
2,610,001	+				-0.9
2,610,001	+				+0.8
2,610,066	+				+1.0
2,610,066	+				-1.1
2,610,149	+		PFLU_RS11765	0.15	+0.1
2,610,150	-		PFLU_RS11765	0.16	+0.6
2,610,150	-		PFLU_RS11765	0.16	-0.4
2,610,150	-		PFLU_RS11765	0.16	-0.7
2,610,171	+		PFLU_RS11765	0.19	-0.4
2,610,171	+		PFLU_RS11765	0.19	-1.5
2,610,171	+		PFLU_RS11765	0.19	+0.8
2,610,172	-		PFLU_RS11765	0.19	+1.6
2,610,184	+		PFLU_RS11765	0.21	-0.4
2,610,184	+		PFLU_RS11765	0.21	-1.0
2,610,184	+		PFLU_RS11765	0.21	-1.2
2,610,184	+		PFLU_RS11765	0.21	-1.0
2,610,184	+		PFLU_RS11765	0.21	-1.0
2,610,185	-		PFLU_RS11765	0.21	-0.7
2,610,185	-		PFLU_RS11765	0.21	+1.8
2,610,185	-		PFLU_RS11765	0.21	-0.8
2,610,190	+		PFLU_RS11765	0.22	+0.5
2,610,190	+		PFLU_RS11765	0.22	-0.9
2,610,190	+		PFLU_RS11765	0.22	-1.0
2,610,190	+		PFLU_RS11765	0.22	-1.7
2,610,190	+		PFLU_RS11765	0.22	+1.3
2,610,191	-		PFLU_RS11765	0.22	-0.4
2,610,191	-		PFLU_RS11765	0.22	-1.5
2,610,201	+		PFLU_RS11765	0.24	-1.0
2,610,202	-		PFLU_RS11765	0.24	+0.9
2,610,221	+		PFLU_RS11765	0.27	+1.7
2,610,221	+		PFLU_RS11765	0.27	-0.5
2,610,222	-		PFLU_RS11765	0.27	+0.6
2,610,232	-		PFLU_RS11765	0.29	-0.3
2,610,235	+		PFLU_RS11765	0.29	+1.4
2,610,235	+		PFLU_RS11765	0.29	-1.2
2,610,235	+		PFLU_RS11765	0.29	+0.1
2,610,235	+		PFLU_RS11765	0.29	-0.6
2,610,235	+		PFLU_RS11765	0.29	+1.1
2,610,236	-		PFLU_RS11765	0.29	+0.6
2,610,236	-		PFLU_RS11765	0.29	-0.7
2,610,247	+		PFLU_RS11765	0.31	+1.7
2,610,247	+		PFLU_RS11765	0.31	-2.4
2,610,247	+		PFLU_RS11765	0.31	-0.4
2,610,247	+		PFLU_RS11765	0.31	-0.3
2,610,247	+		PFLU_RS11765	0.31	+0.0
2,610,247	+		PFLU_RS11765	0.31	+0.4
2,610,247	+		PFLU_RS11765	0.31	-0.1
2,610,247	+		PFLU_RS11765	0.31	-0.6
2,610,247	+		PFLU_RS11765	0.31	-2.6
2,610,247	+		PFLU_RS11765	0.31	-1.1
2,610,247	+		PFLU_RS11765	0.31	-0.2
2,610,248	-		PFLU_RS11765	0.31	+0.1
2,610,248	-		PFLU_RS11765	0.31	+1.5
2,610,248	-		PFLU_RS11765	0.31	+1.1
2,610,248	-		PFLU_RS11765	0.31	+0.5
2,610,248	-		PFLU_RS11765	0.31	-0.8
2,610,248	-		PFLU_RS11765	0.31	-0.9
2,610,248	-		PFLU_RS11765	0.31	-0.0
2,610,248	-		PFLU_RS11765	0.31	+0.6
2,610,248	-		PFLU_RS11765	0.31	+1.1
2,610,258	+		PFLU_RS11765	0.33	-1.4
2,610,258	+		PFLU_RS11765	0.33	+0.7
2,610,259	-		PFLU_RS11765	0.33	+0.3
2,610,287	+		PFLU_RS11765	0.37	+0.8
2,610,287	+		PFLU_RS11765	0.37	-0.3
2,610,288	-		PFLU_RS11765	0.37	+1.3
2,610,288	-		PFLU_RS11765	0.37	-0.3
2,610,313	+		PFLU_RS11765	0.41	-0.8
2,610,314	-		PFLU_RS11765	0.42	+0.8
2,610,538	+		PFLU_RS11765	0.77	+0.4
2,610,538	+		PFLU_RS11765	0.77	-1.0
2,610,538	+		PFLU_RS11765	0.77	-0.7
2,610,539	-		PFLU_RS11765	0.77	-0.3
2,610,539	-		PFLU_RS11765	0.77	-1.1
2,610,539	-		PFLU_RS11765	0.77	-0.8
2,610,539	-		PFLU_RS11765	0.77	-2.2
2,610,539	-		PFLU_RS11765	0.77	-0.8
2,610,685	+				-0.9
2,610,685	+				+2.1
2,610,685	+				-0.2
2,610,685	+				+0.5
2,610,685	+				-0.4
2,610,685	+				+0.0
2,610,685	+				+1.6
2,610,685	+				+0.6
2,610,685	+				+0.5
2,610,685	+				+0.4
2,610,686	-				-1.0
2,610,686	-				+0.1
2,610,686	-				+1.1
2,610,686	-				-0.2
2,610,688	+				+1.0
2,610,689	-				-1.7
2,610,694	+				+0.5
2,610,694	+				-0.1
2,610,695	-				+0.7
2,610,695	-				-0.7
2,610,768	+		PFLU_RS11770	0.13	-1.0
2,610,768	+		PFLU_RS11770	0.13	+0.1
2,610,771	+		PFLU_RS11770	0.14	+2.0
2,611,239	+		PFLU_RS11770	0.83	-0.5
2,611,240	-		PFLU_RS11770	0.83	-0.6
2,611,240	-		PFLU_RS11770	0.83	-1.8
2,611,275	-		PFLU_RS11770	0.88	-1.4
2,611,353	+				-0.6
2,611,354	-				+0.0
2,611,357	+				-1.3
2,611,357	+				-0.4
2,611,358	-				-0.2
2,611,387	+				+0.2
2,611,387	+				+0.7
2,611,388	-				-2.1
2,611,388	-				+0.3
2,611,390	-				-0.3
2,611,405	+				-0.2
2,611,417	+				-0.2
2,611,428	+				-0.6
2,611,428	+				-0.2
2,611,428	+				+0.6
2,611,428	+				+1.7
2,611,428	+				+2.3
2,611,428	+				-1.2
2,611,429	-				+0.4
2,611,429	-				+0.4
2,611,429	-				-1.8
2,611,429	-				+0.8
2,611,445	+				+0.3
2,611,446	-				-0.3
2,611,446	-				-2.8
2,611,450	+				-0.8
2,611,450	+				-0.4
2,611,450	+				+0.5
2,611,450	+				-0.9
2,611,450	+				-1.0
2,611,451	-				-2.1
2,611,451	-				+0.4
2,611,451	-				-1.2
2,611,451	-				-0.1
2,611,451	-				-1.0
2,611,451	-				-1.1
2,611,451	-				+1.2
2,611,451	-				+0.6
2,611,454	+				+2.0
2,611,493	+				+0.8
2,611,493	+				+0.8
2,611,493	+				-1.7
2,611,493	+				-0.6
2,611,494	-				+0.1
2,611,494	-				+1.4
2,611,555	+		PFLU_RS11775	0.11	+0.6
2,611,555	+		PFLU_RS11775	0.11	-2.2
2,611,556	-		PFLU_RS11775	0.11	+1.1
2,611,556	-		PFLU_RS11775	0.11	+0.6
2,611,556	-		PFLU_RS11775	0.11	-0.1
2,611,569	+		PFLU_RS11775	0.12	+1.1
2,611,596	-		PFLU_RS11775	0.14	-0.8
2,611,596	-		PFLU_RS11775	0.14	-0.6
2,611,659	+		PFLU_RS11775	0.20	+1.6
2,611,659	+		PFLU_RS11775	0.20	-1.5
2,611,659	+		PFLU_RS11775	0.20	-1.6
2,611,659	+		PFLU_RS11775	0.20	+2.0
2,611,659	+		PFLU_RS11775	0.20	+0.0
2,611,659	+		PFLU_RS11775	0.20	-0.2
2,611,659	+		PFLU_RS11775	0.20	-0.6
2,611,659	+		PFLU_RS11775	0.20	+0.8
2,611,659	+		PFLU_RS11775	0.20	-0.3
2,611,659	+		PFLU_RS11775	0.20	-1.0
2,611,659	+		PFLU_RS11775	0.20	-0.5
2,611,659	+		PFLU_RS11775	0.20	+1.0
2,611,659	+		PFLU_RS11775	0.20	+2.1
2,611,659	+		PFLU_RS11775	0.20	-0.0
2,611,660	-		PFLU_RS11775	0.20	-0.9
2,611,660	-		PFLU_RS11775	0.20	+1.6
2,611,660	-		PFLU_RS11775	0.20	+0.4
2,611,660	-		PFLU_RS11775	0.20	+1.3
2,611,660	-		PFLU_RS11775	0.20	+0.0
2,611,660	-		PFLU_RS11775	0.20	-0.5
2,611,660	-		PFLU_RS11775	0.20	-1.3
2,611,660	-		PFLU_RS11775	0.20	-0.6
2,611,660	-		PFLU_RS11775	0.20	+0.3
2,611,660	-		PFLU_RS11775	0.20	-1.4
2,611,927	-		PFLU_RS11775	0.43	-0.9
2,611,996	-		PFLU_RS11775	0.50	+0.7
2,612,046	+		PFLU_RS11775	0.54	-1.1
2,612,046	+		PFLU_RS11775	0.54	-1.2
2,612,046	+		PFLU_RS11775	0.54	+0.4
2,612,046	+		PFLU_RS11775	0.54	+0.3
2,612,046	+		PFLU_RS11775	0.54	-0.9
2,612,047	-		PFLU_RS11775	0.54	+0.8
2,612,047	-		PFLU_RS11775	0.54	+1.4
2,612,047	-		PFLU_RS11775	0.54	-0.4
2,612,047	-		PFLU_RS11775	0.54	+2.0
2,612,047	-		PFLU_RS11775	0.54	+0.0
2,612,178	+		PFLU_RS11775	0.66	-1.0
2,612,178	+		PFLU_RS11775	0.66	-0.3
2,612,179	-		PFLU_RS11775	0.66	-1.5
2,612,179	-		PFLU_RS11775	0.66	-1.4
2,612,214	+		PFLU_RS11775	0.69	+0.9
2,612,214	+		PFLU_RS11775	0.69	+0.3
2,612,214	+		PFLU_RS11775	0.69	-0.5
2,612,214	+		PFLU_RS11775	0.69	-1.0
2,612,215	-		PFLU_RS11775	0.69	-0.4
2,612,215	-		PFLU_RS11775	0.69	+0.0
2,612,215	-		PFLU_RS11775	0.69	-0.4
2,612,215	-		PFLU_RS11775	0.69	-2.6
2,612,215	-		PFLU_RS11775	0.69	-0.8
2,612,215	-		PFLU_RS11775	0.69	-1.1
2,612,215	-		PFLU_RS11775	0.69	-0.2
2,612,215	-		PFLU_RS11775	0.69	-1.3
2,612,256	+		PFLU_RS11775	0.72	+0.9
2,612,256	+		PFLU_RS11775	0.72	-0.8
2,612,352	+		PFLU_RS11775	0.81	+1.4
2,612,352	+		PFLU_RS11775	0.81	-1.0
2,612,352	+		PFLU_RS11775	0.81	-1.4
2,612,352	+		PFLU_RS11775	0.81	-0.1
2,612,352	+		PFLU_RS11775	0.81	+0.3
2,612,353	-		PFLU_RS11775	0.81	-0.3