Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09245

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
2,046,391	+		PFLU_RS09240	0.53	-0.6
2,046,391	+		PFLU_RS09240	0.53	-1.2
2,046,451	+		PFLU_RS09240	0.56	-0.7
2,046,451	+		PFLU_RS09240	0.56	+0.1
2,046,451	+		PFLU_RS09240	0.56	+0.1
2,046,451	+		PFLU_RS09240	0.56	-0.8
2,046,451	+		PFLU_RS09240	0.56	-1.5
2,046,451	+		PFLU_RS09240	0.56	+0.3
2,046,452	-		PFLU_RS09240	0.56	-0.8
2,046,452	-		PFLU_RS09240	0.56	+0.2
2,046,452	-		PFLU_RS09240	0.56	-0.6
2,046,452	-		PFLU_RS09240	0.56	-0.2
2,046,452	-		PFLU_RS09240	0.56	-1.0
2,046,452	-		PFLU_RS09240	0.56	+0.5
2,046,453	+		PFLU_RS09240	0.56	-0.5
2,046,453	+		PFLU_RS09240	0.56	+1.5
2,046,453	+		PFLU_RS09240	0.56	-0.1
2,046,454	-		PFLU_RS09240	0.57	+1.4
2,046,454	-		PFLU_RS09240	0.57	-2.2
2,046,466	+		PFLU_RS09240	0.57	-1.0
2,046,466	+		PFLU_RS09240	0.57	-1.1
2,046,466	+		PFLU_RS09240	0.57	-0.3
2,046,466	+		PFLU_RS09240	0.57	+1.7
2,046,467	-		PFLU_RS09240	0.57	-0.6
2,046,467	-		PFLU_RS09240	0.57	-0.6
2,046,467	-		PFLU_RS09240	0.57	-0.6
2,046,652	+		PFLU_RS09240	0.67	-2.0
2,046,652	+		PFLU_RS09240	0.67	-0.0
2,046,652	+		PFLU_RS09240	0.67	+1.2
2,046,652	+		PFLU_RS09240	0.67	-2.4
2,046,652	+		PFLU_RS09240	0.67	+0.3
2,046,652	+		PFLU_RS09240	0.67	-2.1
2,046,652	+		PFLU_RS09240	0.67	-0.1
2,046,652	+		PFLU_RS09240	0.67	+1.0
2,046,652	+		PFLU_RS09240	0.67	+1.1
2,046,652	+		PFLU_RS09240	0.67	+0.5
2,046,652	+		PFLU_RS09240	0.67	-0.7
2,046,652	+		PFLU_RS09240	0.67	-2.5
2,046,652	+		PFLU_RS09240	0.67	-1.3
2,046,652	+		PFLU_RS09240	0.67	+1.1
2,046,652	+		PFLU_RS09240	0.67	-1.2
2,046,652	+		PFLU_RS09240	0.67	-0.2
2,046,652	+		PFLU_RS09240	0.67	-0.9
2,046,652	+		PFLU_RS09240	0.67	+0.8
2,046,652	+		PFLU_RS09240	0.67	-0.3
2,046,653	-		PFLU_RS09240	0.67	-1.3
2,046,653	-		PFLU_RS09240	0.67	-2.1
2,046,653	-		PFLU_RS09240	0.67	+1.0
2,046,653	-		PFLU_RS09240	0.67	+1.0
2,046,653	-		PFLU_RS09240	0.67	-0.6
2,046,653	-		PFLU_RS09240	0.67	+0.2
2,046,653	-		PFLU_RS09240	0.67	+1.3
2,046,653	-		PFLU_RS09240	0.67	-1.0
2,046,653	-		PFLU_RS09240	0.67	-0.8
2,046,653	-		PFLU_RS09240	0.67	-0.2
2,046,653	-		PFLU_RS09240	0.67	-1.3
2,046,653	-		PFLU_RS09240	0.67	-0.2
2,046,653	-		PFLU_RS09240	0.67	-1.8
2,046,653	-		PFLU_RS09240	0.67	+0.5
2,046,653	-		PFLU_RS09240	0.67	-0.3
2,046,653	-		PFLU_RS09240	0.67	+0.7
2,046,653	-		PFLU_RS09240	0.67	-1.0
2,046,653	-		PFLU_RS09240	0.67	-0.6
2,046,653	-		PFLU_RS09240	0.67	-0.6
2,046,653	-		PFLU_RS09240	0.67	+0.6
2,046,718	+		PFLU_RS09240	0.71	-0.1
2,046,718	+		PFLU_RS09240	0.71	+0.4
2,046,718	+		PFLU_RS09240	0.71	-2.7
2,046,718	+		PFLU_RS09240	0.71	+0.7
2,046,719	-		PFLU_RS09240	0.71	-0.5
2,046,719	-		PFLU_RS09240	0.71	+2.9
2,046,850	+		PFLU_RS09240	0.78	-1.1
2,046,850	+		PFLU_RS09240	0.78	+0.5
2,046,850	+		PFLU_RS09240	0.78	-0.5
2,046,850	+		PFLU_RS09240	0.78	+0.8
2,046,851	-		PFLU_RS09240	0.78	+0.2
2,046,851	-		PFLU_RS09240	0.78	+0.5
2,046,851	-		PFLU_RS09240	0.78	-1.1
2,046,851	-		PFLU_RS09240	0.78	+0.1
2,046,851	-		PFLU_RS09240	0.78	+0.6
2,046,851	-		PFLU_RS09240	0.78	-0.5
2,046,851	-		PFLU_RS09240	0.78	-1.9
2,046,851	-		PFLU_RS09240	0.78	+1.6
2,046,851	-		PFLU_RS09240	0.78	-0.3
2,046,851	-		PFLU_RS09240	0.78	+1.0
2,046,851	-		PFLU_RS09240	0.78	+0.7
2,046,853	+		PFLU_RS09240	0.78	+0.8
2,046,853	+		PFLU_RS09240	0.78	+0.8
2,046,853	+		PFLU_RS09240	0.78	+0.5
2,046,853	+		PFLU_RS09240	0.78	+0.0
2,046,854	-		PFLU_RS09240	0.78	+1.1
2,046,854	-		PFLU_RS09240	0.78	-1.3
2,046,854	-		PFLU_RS09240	0.78	+0.2
2,046,854	-		PFLU_RS09240	0.78	-0.2
2,046,854	-		PFLU_RS09240	0.78	-0.3
2,046,854	-		PFLU_RS09240	0.78	+2.8
2,046,862	+		PFLU_RS09240	0.78	-1.7
2,046,862	+		PFLU_RS09240	0.78	+0.8
2,046,863	-		PFLU_RS09240	0.78	-0.7
2,046,863	-		PFLU_RS09240	0.78	-0.6
2,046,863	-		PFLU_RS09240	0.78	+1.3
2,046,863	-		PFLU_RS09240	0.78	+0.7
2,046,863	-		PFLU_RS09240	0.78	+0.7
2,046,879	+		PFLU_RS09240	0.79	-1.3
2,046,879	+		PFLU_RS09240	0.79	-1.2
2,046,879	+		PFLU_RS09240	0.79	-0.7
2,046,879	+		PFLU_RS09240	0.79	+0.6
2,046,879	+		PFLU_RS09240	0.79	+1.5
2,046,879	+		PFLU_RS09240	0.79	-1.3
2,046,879	+		PFLU_RS09240	0.79	-1.3
2,046,880	-		PFLU_RS09240	0.79	-0.4
2,046,880	-		PFLU_RS09240	0.79	-0.0
2,046,943	+		PFLU_RS09240	0.83	-1.7
2,046,944	-		PFLU_RS09240	0.83	+0.8
2,046,973	+		PFLU_RS09240	0.84	-0.8
2,046,973	+		PFLU_RS09240	0.84	+0.3
2,046,974	-		PFLU_RS09240	0.84	-0.7
2,047,059	-		PFLU_RS09240	0.89	+2.1
2,047,264	+				-0.6
2,047,264	+				+0.9
2,047,264	+				-2.0
2,047,264	+				+0.7
2,047,264	+				+1.3
2,047,264	+				-2.0
2,047,265	-				-1.0
2,047,265	-				+0.8
2,047,265	-				+0.1
2,047,265	-				-0.2
2,047,265	-				+1.2
2,047,265	-				-0.3
2,047,265	-				-0.8
2,047,281	-				+2.0
2,047,281	-				-0.3
2,047,283	-				-0.0
2,047,330	+				+0.4
2,047,330	+				+0.8
2,047,330	+				+2.4
2,047,399	-				-1.9
2,047,448	+		PFLU_RS09245	0.23	-0.2
2,047,448	+		PFLU_RS09245	0.23	+0.4
2,047,448	+		PFLU_RS09245	0.23	+0.7
2,047,448	+		PFLU_RS09245	0.23	+0.2
2,047,448	+		PFLU_RS09245	0.23	-2.1
2,047,449	-		PFLU_RS09245	0.23	+0.2
2,047,467	-		PFLU_RS09245	0.29	-0.3
2,047,516	+		PFLU_RS09245	0.44	+1.1
2,047,516	+		PFLU_RS09245	0.44	-1.6
2,047,516	+		PFLU_RS09245	0.44	+2.4
2,047,516	+		PFLU_RS09245	0.44	-0.0
2,047,516	+		PFLU_RS09245	0.44	-1.4
2,047,627	+		PFLU_RS09245	0.79	+0.3
2,047,627	+		PFLU_RS09245	0.79	+1.2
2,047,628	-		PFLU_RS09245	0.80	-1.1
2,047,628	-		PFLU_RS09245	0.80	+0.4
2,047,628	-		PFLU_RS09245	0.80	+0.0
2,047,702	+				-0.0
2,047,702	+				-0.3
2,047,702	+				+0.9
2,047,702	+				-0.4
2,047,702	+				-1.2
2,047,702	+				-1.0
2,047,702	+				-0.2
2,047,703	-				-0.3
2,047,703	-				-1.6
2,047,703	-				-0.4
2,047,703	-				-0.3
2,047,703	-				+1.6
2,047,703	-				-1.8
2,047,703	-				-0.8
2,047,705	+				+1.5
2,047,705	+				-1.1
2,047,705	+				-1.0
2,047,705	+				+0.4
2,047,705	+				-0.9
2,047,705	+				+1.0
2,047,705	+				-2.2
2,047,705	+				-1.0
2,047,705	+				-2.0
2,047,706	-				-1.3
2,047,706	-				+0.3
2,047,706	-				-0.8
2,047,706	-				+1.6
2,047,706	-				+0.6
2,047,706	-				-0.9
2,047,706	-				+0.8
2,047,706	-				+0.3
2,047,708	+				-1.4
2,047,708	+				+0.4
2,047,708	+				-0.1
2,047,708	+				+1.1
2,047,708	+				+0.0
2,047,708	+				+0.2
2,047,708	+				-0.2
2,047,708	+				-0.0
2,047,709	-				-1.0
2,047,709	-				-0.3
2,047,709	-				-2.4
2,047,709	-				-0.2
2,047,709	-				-1.4
2,047,709	-				+1.7
2,047,709	-				-0.6
2,047,709	-				+0.7
2,047,709	-				-0.0
2,047,709	-				+1.6
2,047,709	-				+2.3
2,047,709	-				-1.1
2,047,709	-				-0.8
2,047,709	-				+0.9
2,047,709	-				+0.7
2,047,729	+				-2.0
2,047,730	-				+1.5
2,047,859	+				+0.3
2,047,859	+				-0.6
2,047,860	-				+0.4
2,047,860	-				+0.9
2,047,860	-				+0.7
2,047,860	-				-0.1
2,047,884	+				+0.8
2,047,885	-				-0.7
2,048,043	-		PFLU_RS09250	0.25	-0.6
2,048,043	-		PFLU_RS09250	0.25	+1.0
2,048,188	+		PFLU_RS09250	0.40	+0.4