Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4490 and Psyr_4491 are separated by 108 nucleotides Psyr_4491 and Psyr_4492 are separated by 33 nucleotides Psyr_4492 and Psyr_4493 are separated by 130 nucleotides
Psyr_4490: Psyr_4490 - transcriptional regulator, DeoR family, at 5,352,121 to 5,352,885
_4490
Psyr_4491: Psyr_4491 - Deoxyribose-phosphate aldolase, at 5,352,994 to 5,353,674
_4491
Psyr_4492: Psyr_4492 - hypothetical protein, at 5,353,708 to 5,353,956
_4492
Psyr_4493: Psyr_4493 - PAS:GGDEF, at 5,354,087 to 5,357,005
_4493
Position (kb) 5353
5354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5352.722 kb on + strand, within Psyr_4490 at 5352.722 kb on + strand, within Psyr_4490 at 5352.723 kb on - strand, within Psyr_4490 at 5352.917 kb on + strand at 5352.923 kb on - strand at 5352.936 kb on - strand at 5352.949 kb on - strand at 5352.966 kb on + strand at 5352.967 kb on - strand at 5353.111 kb on + strand, within Psyr_4491 at 5353.111 kb on + strand, within Psyr_4491 at 5353.111 kb on + strand, within Psyr_4491 at 5353.112 kb on - strand, within Psyr_4491 at 5353.530 kb on - strand, within Psyr_4491 at 5353.656 kb on + strand at 5353.669 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.710 kb on - strand at 5353.710 kb on - strand at 5353.710 kb on - strand at 5353.710 kb on - strand at 5353.885 kb on - strand, within Psyr_4492 at 5353.885 kb on - strand, within Psyr_4492 at 5354.007 kb on + strand at 5354.007 kb on + strand at 5354.007 kb on + strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.074 kb on + strand at 5354.075 kb on - strand at 5354.075 kb on - strand at 5354.075 kb on - strand at 5354.080 kb on + strand at 5354.114 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.126 kb on - strand at 5354.137 kb on + strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.174 kb on - strand at 5354.174 kb on - strand at 5354.174 kb on - strand at 5354.176 kb on + strand at 5354.177 kb on - strand at 5354.177 kb on - strand at 5354.208 kb on + strand at 5354.208 kb on + strand at 5354.208 kb on + strand at 5354.208 kb on + strand at 5354.209 kb on - strand at 5354.209 kb on - strand at 5354.209 kb on - strand at 5354.263 kb on + strand at 5354.264 kb on - strand at 5354.264 kb on - strand at 5354.264 kb on - strand at 5354.330 kb on + strand at 5354.331 kb on - strand at 5354.331 kb on - strand at 5354.332 kb on + strand at 5354.332 kb on + strand at 5354.333 kb on - strand at 5354.389 kb on - strand, within Psyr_4493 at 5354.443 kb on - strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.453 kb on - strand, within Psyr_4493 at 5354.453 kb on - strand, within Psyr_4493 at 5354.462 kb on + strand, within Psyr_4493 at 5354.519 kb on + strand, within Psyr_4493 at 5354.519 kb on + strand, within Psyr_4493 at 5354.520 kb on - strand, within Psyr_4493 at 5354.541 kb on + strand, within Psyr_4493 at 5354.541 kb on + strand, within Psyr_4493 at 5354.542 kb on - strand, within Psyr_4493 at 5354.542 kb on - strand, within Psyr_4493 at 5354.542 kb on - strand, within Psyr_4493 at 5354.554 kb on + strand, within Psyr_4493 at 5354.555 kb on - strand, within Psyr_4493 at 5354.582 kb on + strand, within Psyr_4493 at 5354.582 kb on + strand, within Psyr_4493 at 5354.582 kb on + strand, within Psyr_4493 at 5354.632 kb on + strand, within Psyr_4493 at 5354.633 kb on - strand, within Psyr_4493 at 5354.633 kb on - strand, within Psyr_4493 at 5354.722 kb on + strand, within Psyr_4493 at 5354.723 kb on - strand, within Psyr_4493 at 5354.778 kb on - strand, within Psyr_4493 at 5354.796 kb on - strand, within Psyr_4493 at 5354.840 kb on - strand, within Psyr_4493 at 5354.922 kb on + strand, within Psyr_4493
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 5,352,722 + Psyr_4490 0.79 -0.6 5,352,722 + Psyr_4490 0.79 -2.2 5,352,723 - Psyr_4490 0.79 +0.2 5,352,917 + -0.4 5,352,923 - -0.2 5,352,936 - -1.5 5,352,949 - -0.8 5,352,966 + -1.0 5,352,967 - +0.2 5,353,111 + Psyr_4491 0.17 -0.7 5,353,111 + Psyr_4491 0.17 +0.7 5,353,111 + Psyr_4491 0.17 +1.2 5,353,112 - Psyr_4491 0.17 -0.2 5,353,530 - Psyr_4491 0.79 -0.9 5,353,656 + -0.2 5,353,669 + -0.2 5,353,709 + +1.2 5,353,709 + -0.5 5,353,709 + -0.5 5,353,709 + +1.0 5,353,709 + +1.2 5,353,709 + -0.0 5,353,709 + +0.4 5,353,710 - +0.5 5,353,710 - -0.5 5,353,710 - -0.1 5,353,710 - +0.0 5,353,885 - Psyr_4492 0.71 +1.6 5,353,885 - Psyr_4492 0.71 -1.2 5,354,007 + +0.0 5,354,007 + -1.0 5,354,007 + -1.3 5,354,008 - -1.8 5,354,008 - -0.5 5,354,008 - +0.3 5,354,008 - -0.7 5,354,008 - -1.0 5,354,008 - -0.3 5,354,074 + -0.6 5,354,075 - +1.6 5,354,075 - +0.6 5,354,075 - -0.8 5,354,080 + -1.7 5,354,114 + +0.2 5,354,125 + +0.3 5,354,125 + +0.1 5,354,125 + -0.4 5,354,125 + +1.2 5,354,125 + -0.0 5,354,125 + +1.5 5,354,125 + +0.7 5,354,125 + -3.1 5,354,125 + +0.5 5,354,125 + -1.2 5,354,126 - +0.2 5,354,137 + -1.0 5,354,138 - +0.6 5,354,138 - +2.8 5,354,138 - -0.2 5,354,138 - +0.7 5,354,138 - +1.2 5,354,174 - +0.3 5,354,174 - -1.8 5,354,174 - +0.5 5,354,176 + +1.6 5,354,177 - -0.1 5,354,177 - -0.2 5,354,208 + +0.9 5,354,208 + -0.9 5,354,208 + -1.5 5,354,208 + +1.2 5,354,209 - -0.2 5,354,209 - -1.0 5,354,209 - +1.0 5,354,263 + +0.1 5,354,264 - -0.7 5,354,264 - -0.9 5,354,264 - -0.9 5,354,330 + -1.1 5,354,331 - +0.7 5,354,331 - -1.6 5,354,332 + +0.3 5,354,332 + -1.1 5,354,333 - -0.2 5,354,389 - Psyr_4493 0.10 -2.0 5,354,443 - Psyr_4493 0.12 +1.2 5,354,450 + Psyr_4493 0.12 +0.4 5,354,450 + Psyr_4493 0.12 +0.2 5,354,450 + Psyr_4493 0.12 +0.2 5,354,450 + Psyr_4493 0.12 -0.9 5,354,450 + Psyr_4493 0.12 -1.1 5,354,450 + Psyr_4493 0.12 +0.3 5,354,450 + Psyr_4493 0.12 -2.3 5,354,451 - Psyr_4493 0.12 +0.4 5,354,451 - Psyr_4493 0.12 +0.7 5,354,451 - Psyr_4493 0.12 -0.1 5,354,451 - Psyr_4493 0.12 -0.4 5,354,451 - Psyr_4493 0.12 +1.1 5,354,451 - Psyr_4493 0.12 -0.5 5,354,451 - Psyr_4493 0.12 -2.3 5,354,451 - Psyr_4493 0.12 -0.4 5,354,451 - Psyr_4493 0.12 +0.4 5,354,451 - Psyr_4493 0.12 -0.3 5,354,451 - Psyr_4493 0.12 +1.7 5,354,453 - Psyr_4493 0.13 +2.2 5,354,453 - Psyr_4493 0.13 -0.8 5,354,462 + Psyr_4493 0.13 +3.2 5,354,519 + Psyr_4493 0.15 -3.0 5,354,519 + Psyr_4493 0.15 +0.4 5,354,520 - Psyr_4493 0.15 +1.5 5,354,541 + Psyr_4493 0.16 +0.4 5,354,541 + Psyr_4493 0.16 -0.9 5,354,542 - Psyr_4493 0.16 +1.2 5,354,542 - Psyr_4493 0.16 +0.3 5,354,542 - Psyr_4493 0.16 -0.9 5,354,554 + Psyr_4493 0.16 -0.9 5,354,555 - Psyr_4493 0.16 -0.6 5,354,582 + Psyr_4493 0.17 -1.2 5,354,582 + Psyr_4493 0.17 -1.2 5,354,582 + Psyr_4493 0.17 -1.3 5,354,632 + Psyr_4493 0.19 -0.4 5,354,633 - Psyr_4493 0.19 -0.0 5,354,633 - Psyr_4493 0.19 -0.4 5,354,722 + Psyr_4493 0.22 +1.2 5,354,723 - Psyr_4493 0.22 +0.4 5,354,778 - Psyr_4493 0.24 +1.3 5,354,796 - Psyr_4493 0.24 -0.2 5,354,840 - Psyr_4493 0.26 -1.9 5,354,922 + Psyr_4493 0.29 +0.6
Or see this region's nucleotide sequence