Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3658 and Psyr_3659 are separated by 173 nucleotides Psyr_3659 and Psyr_3660 are separated by 15 nucleotides Psyr_3660 and Psyr_3661 are separated by 169 nucleotides
Psyr_3658: Psyr_3658 - Rhodanese-like protein, at 4,345,376 to 4,346,329
_3658
Psyr_3659: Psyr_3659 - transcriptional regulator, BolA protein family, at 4,346,503 to 4,346,796
_3659
Psyr_3660: Psyr_3660 - conserved hypothetical protein, at 4,346,812 to 4,347,339
_3660
Psyr_3661: Psyr_3661 - Fumarate hydratase, class II, at 4,347,509 to 4,348,903
_3661
Position (kb) 4346
4347
4348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4345.833 kb on + strand, within Psyr_3658 at 4345.833 kb on + strand, within Psyr_3658 at 4345.833 kb on + strand, within Psyr_3658 at 4345.833 kb on + strand, within Psyr_3658 at 4345.834 kb on - strand, within Psyr_3658 at 4345.906 kb on - strand, within Psyr_3658 at 4345.906 kb on - strand, within Psyr_3658 at 4345.977 kb on + strand, within Psyr_3658 at 4345.977 kb on + strand, within Psyr_3658 at 4345.977 kb on + strand, within Psyr_3658 at 4345.977 kb on + strand, within Psyr_3658 at 4345.978 kb on - strand, within Psyr_3658 at 4345.978 kb on - strand, within Psyr_3658 at 4345.978 kb on - strand, within Psyr_3658 at 4345.978 kb on - strand, within Psyr_3658 at 4345.978 kb on - strand, within Psyr_3658 at 4345.981 kb on + strand, within Psyr_3658 at 4345.981 kb on + strand, within Psyr_3658 at 4346.059 kb on - strand, within Psyr_3658 at 4346.283 kb on + strand at 4346.283 kb on + strand at 4346.284 kb on - strand at 4346.284 kb on - strand at 4346.284 kb on - strand at 4346.284 kb on - strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.331 kb on + strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.332 kb on - strand at 4346.423 kb on + strand at 4346.423 kb on + strand at 4346.490 kb on + strand at 4346.570 kb on + strand, within Psyr_3659 at 4346.570 kb on + strand, within Psyr_3659 at 4346.570 kb on + strand, within Psyr_3659 at 4346.570 kb on + strand, within Psyr_3659 at 4346.570 kb on + strand, within Psyr_3659 at 4346.570 kb on + strand, within Psyr_3659 at 4346.570 kb on + strand, within Psyr_3659 at 4346.570 kb on + strand, within Psyr_3659 at 4346.571 kb on - strand, within Psyr_3659 at 4346.571 kb on - strand, within Psyr_3659 at 4346.624 kb on + strand, within Psyr_3659 at 4346.625 kb on - strand, within Psyr_3659 at 4346.690 kb on + strand, within Psyr_3659 at 4346.690 kb on + strand, within Psyr_3659 at 4346.690 kb on + strand, within Psyr_3659 at 4346.690 kb on + strand, within Psyr_3659 at 4346.690 kb on + strand, within Psyr_3659 at 4346.690 kb on + strand, within Psyr_3659 at 4346.691 kb on - strand, within Psyr_3659 at 4346.691 kb on - strand, within Psyr_3659 at 4346.718 kb on + strand, within Psyr_3659 at 4346.718 kb on + strand, within Psyr_3659 at 4346.718 kb on + strand, within Psyr_3659 at 4346.718 kb on + strand, within Psyr_3659 at 4346.718 kb on + strand, within Psyr_3659 at 4346.719 kb on - strand, within Psyr_3659 at 4346.719 kb on - strand, within Psyr_3659 at 4346.719 kb on - strand, within Psyr_3659 at 4346.719 kb on - strand, within Psyr_3659 at 4346.734 kb on + strand, within Psyr_3659 at 4346.734 kb on + strand, within Psyr_3659 at 4346.734 kb on + strand, within Psyr_3659 at 4346.735 kb on - strand, within Psyr_3659 at 4346.735 kb on - strand, within Psyr_3659 at 4346.735 kb on - strand, within Psyr_3659 at 4346.994 kb on - strand, within Psyr_3660 at 4347.041 kb on + strand, within Psyr_3660 at 4347.041 kb on + strand, within Psyr_3660 at 4347.041 kb on + strand, within Psyr_3660 at 4347.042 kb on - strand, within Psyr_3660 at 4347.042 kb on - strand, within Psyr_3660 at 4347.042 kb on - strand, within Psyr_3660 at 4347.116 kb on + strand, within Psyr_3660 at 4347.117 kb on - strand, within Psyr_3660 at 4347.117 kb on - strand, within Psyr_3660 at 4347.350 kb on + strand at 4347.354 kb on + strand at 4347.354 kb on + strand at 4347.355 kb on - strand at 4347.355 kb on - strand at 4347.395 kb on + strand at 4347.396 kb on - strand at 4347.466 kb on + strand at 4347.467 kb on - strand at 4347.477 kb on - strand at 4347.477 kb on - strand at 4347.493 kb on + strand at 4347.493 kb on + strand at 4347.493 kb on + strand at 4347.494 kb on - strand at 4347.494 kb on - strand at 4347.494 kb on - strand at 4347.501 kb on + strand at 4347.502 kb on - strand at 4347.502 kb on - strand at 4347.502 kb on - strand at 4347.563 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 4,345,833 + Psyr_3658 0.48 +0.9 4,345,833 + Psyr_3658 0.48 +0.4 4,345,833 + Psyr_3658 0.48 -0.2 4,345,833 + Psyr_3658 0.48 -0.4 4,345,834 - Psyr_3658 0.48 -0.6 4,345,906 - Psyr_3658 0.56 +0.7 4,345,906 - Psyr_3658 0.56 -0.1 4,345,977 + Psyr_3658 0.63 -0.5 4,345,977 + Psyr_3658 0.63 -2.7 4,345,977 + Psyr_3658 0.63 -0.2 4,345,977 + Psyr_3658 0.63 -1.2 4,345,978 - Psyr_3658 0.63 -1.3 4,345,978 - Psyr_3658 0.63 +3.7 4,345,978 - Psyr_3658 0.63 +0.5 4,345,978 - Psyr_3658 0.63 +0.1 4,345,978 - Psyr_3658 0.63 -0.8 4,345,981 + Psyr_3658 0.63 -0.2 4,345,981 + Psyr_3658 0.63 -0.4 4,346,059 - Psyr_3658 0.72 -2.1 4,346,283 + +1.7 4,346,283 + +1.2 4,346,284 - -0.7 4,346,284 - +1.9 4,346,284 - +0.2 4,346,284 - +1.4 4,346,331 + +0.5 4,346,331 + -1.8 4,346,331 + +0.3 4,346,331 + -1.6 4,346,331 + +0.3 4,346,331 + -0.7 4,346,331 + +0.3 4,346,331 + -0.5 4,346,331 + -0.3 4,346,331 + -0.2 4,346,331 + +1.9 4,346,331 + -0.2 4,346,331 + +1.1 4,346,331 + +0.9 4,346,331 + -3.0 4,346,331 + -2.8 4,346,331 + -0.3 4,346,331 + +0.9 4,346,331 + -0.2 4,346,331 + +1.9 4,346,332 - -0.2 4,346,332 - -1.9 4,346,332 - +1.5 4,346,332 - +1.4 4,346,332 - -0.3 4,346,332 - -0.1 4,346,332 - +0.1 4,346,332 - -2.0 4,346,332 - -0.1 4,346,332 - +0.4 4,346,332 - +1.3 4,346,332 - -0.1 4,346,332 - -0.8 4,346,332 - -0.6 4,346,332 - +0.2 4,346,332 - +0.5 4,346,332 - -1.3 4,346,332 - +0.9 4,346,423 + +0.1 4,346,423 + +0.8 4,346,490 + -0.7 4,346,570 + Psyr_3659 0.23 -0.4 4,346,570 + Psyr_3659 0.23 -0.3 4,346,570 + Psyr_3659 0.23 -0.1 4,346,570 + Psyr_3659 0.23 -0.1 4,346,570 + Psyr_3659 0.23 -1.1 4,346,570 + Psyr_3659 0.23 -0.2 4,346,570 + Psyr_3659 0.23 -1.1 4,346,570 + Psyr_3659 0.23 -0.1 4,346,571 - Psyr_3659 0.23 +0.5 4,346,571 - Psyr_3659 0.23 -0.1 4,346,624 + Psyr_3659 0.41 -0.4 4,346,625 - Psyr_3659 0.41 +0.2 4,346,690 + Psyr_3659 0.64 +0.6 4,346,690 + Psyr_3659 0.64 -1.5 4,346,690 + Psyr_3659 0.64 -1.3 4,346,690 + Psyr_3659 0.64 -0.7 4,346,690 + Psyr_3659 0.64 +0.2 4,346,690 + Psyr_3659 0.64 -0.6 4,346,691 - Psyr_3659 0.64 -0.5 4,346,691 - Psyr_3659 0.64 +0.9 4,346,718 + Psyr_3659 0.73 +0.5 4,346,718 + Psyr_3659 0.73 -0.7 4,346,718 + Psyr_3659 0.73 +1.0 4,346,718 + Psyr_3659 0.73 +0.6 4,346,718 + Psyr_3659 0.73 -1.0 4,346,719 - Psyr_3659 0.73 +2.5 4,346,719 - Psyr_3659 0.73 -0.1 4,346,719 - Psyr_3659 0.73 +0.7 4,346,719 - Psyr_3659 0.73 -1.9 4,346,734 + Psyr_3659 0.79 -0.2 4,346,734 + Psyr_3659 0.79 -0.3 4,346,734 + Psyr_3659 0.79 +0.4 4,346,735 - Psyr_3659 0.79 -1.3 4,346,735 - Psyr_3659 0.79 +1.9 4,346,735 - Psyr_3659 0.79 -0.1 4,346,994 - Psyr_3660 0.34 -0.1 4,347,041 + Psyr_3660 0.43 +1.9 4,347,041 + Psyr_3660 0.43 +0.9 4,347,041 + Psyr_3660 0.43 +2.9 4,347,042 - Psyr_3660 0.44 +2.1 4,347,042 - Psyr_3660 0.44 +2.9 4,347,042 - Psyr_3660 0.44 +0.8 4,347,116 + Psyr_3660 0.58 -0.1 4,347,117 - Psyr_3660 0.58 +0.4 4,347,117 - Psyr_3660 0.58 -0.3 4,347,350 + +1.3 4,347,354 + +0.1 4,347,354 + +0.3 4,347,355 - -1.2 4,347,355 - +2.1 4,347,395 + +0.9 4,347,396 - -0.6 4,347,466 + +0.3 4,347,467 - +0.4 4,347,477 - -1.7 4,347,477 - +1.1 4,347,493 + -0.3 4,347,493 + +2.6 4,347,493 + -1.0 4,347,494 - -1.4 4,347,494 - -0.3 4,347,494 - +0.5 4,347,501 + +0.2 4,347,502 - +1.6 4,347,502 - -1.4 4,347,502 - +0.3 4,347,563 + -0.1
Or see this region's nucleotide sequence