Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3591

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3589 and Psyr_3590 are separated by 171 nucleotidesPsyr_3590 and Psyr_3591 are separated by 86 nucleotidesPsyr_3591 and Psyr_3592 are separated by 0 nucleotidesPsyr_3592 and Psyr_3593 are separated by 173 nucleotides Psyr_3589: Psyr_3589 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,270,692 to 4,271,369 _3589 Psyr_3590: Psyr_3590 - conserved hypothetical protein, at 4,271,541 to 4,272,026 _3590 Psyr_3591: Psyr_3591 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,272,113 to 4,273,462 _3591 Psyr_3592: Psyr_3592 - Nitroreductase, at 4,273,463 to 4,274,023 _3592 Psyr_3593: Psyr_3593 - K+ transporter Trk, at 4,274,197 to 4,275,651 _3593 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4271.253 kb on + strand, within Psyr_3589at 4271.254 kb on - strand, within Psyr_3589at 4271.355 kb on + strandat 4271.355 kb on + strandat 4271.355 kb on + strandat 4271.355 kb on + strandat 4271.355 kb on + strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.356 kb on - strandat 4271.358 kb on + strandat 4271.358 kb on + strandat 4271.359 kb on - strandat 4271.376 kb on - strandat 4271.389 kb on + strandat 4271.389 kb on + strandat 4271.389 kb on + strandat 4271.389 kb on + strandat 4271.389 kb on + strandat 4271.389 kb on + strandat 4271.445 kb on + strandat 4271.445 kb on + strandat 4271.446 kb on - strandat 4271.446 kb on - strandat 4271.446 kb on - strandat 4271.536 kb on - strandat 4271.536 kb on - strandat 4271.693 kb on + strand, within Psyr_3590at 4271.693 kb on + strand, within Psyr_3590at 4271.694 kb on - strand, within Psyr_3590at 4271.694 kb on - strand, within Psyr_3590at 4271.818 kb on - strand, within Psyr_3590at 4272.168 kb on + strandat 4272.169 kb on - strandat 4272.196 kb on + strandat 4272.196 kb on + strandat 4272.196 kb on + strandat 4272.196 kb on + strandat 4272.196 kb on + strandat 4272.197 kb on - strandat 4272.197 kb on - strandat 4272.197 kb on - strandat 4272.197 kb on - strandat 4272.197 kb on - strandat 4272.503 kb on + strand, within Psyr_3591at 4272.504 kb on - strand, within Psyr_3591at 4272.504 kb on - strand, within Psyr_3591at 4272.504 kb on - strand, within Psyr_3591at 4272.511 kb on + strand, within Psyr_3591at 4272.512 kb on - strand, within Psyr_3591at 4272.671 kb on + strand, within Psyr_3591at 4272.692 kb on + strand, within Psyr_3591at 4272.692 kb on + strand, within Psyr_3591at 4273.543 kb on - strand, within Psyr_3592at 4273.606 kb on - strand, within Psyr_3592at 4273.606 kb on - strand, within Psyr_3592at 4273.606 kb on - strand, within Psyr_3592at 4273.606 kb on - strand, within Psyr_3592at 4273.650 kb on + strand, within Psyr_3592at 4273.650 kb on + strand, within Psyr_3592at 4273.650 kb on + strand, within Psyr_3592at 4273.650 kb on + strand, within Psyr_3592at 4273.651 kb on - strand, within Psyr_3592at 4273.651 kb on - strand, within Psyr_3592at 4274.056 kb on + strandat 4274.056 kb on + strandat 4274.057 kb on - strandat 4274.057 kb on - strandat 4274.101 kb on - strandat 4274.139 kb on + strandat 4274.139 kb on + strandat 4274.139 kb on + strandat 4274.140 kb on - strandat 4274.140 kb on - strandat 4274.140 kb on - strandat 4274.140 kb on - strandat 4274.140 kb on - strandat 4274.140 kb on - strandat 4274.160 kb on - strandat 4274.274 kb on - strandat 4274.296 kb on + strandat 4274.297 kb on - strandat 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.416 kb on + strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.417 kb on - strand, within Psyr_3593at 4274.448 kb on - strand, within Psyr_3593

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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4,271,253 + Psyr_3589 0.83 -1.7
4,271,254 - Psyr_3589 0.83 +0.1
4,271,355 + +1.5
4,271,355 + +0.1
4,271,355 + -2.3
4,271,355 + -1.7
4,271,355 + +0.1
4,271,356 - -1.3
4,271,356 - -1.5
4,271,356 - -1.1
4,271,356 - -0.9
4,271,356 - -0.1
4,271,356 - -2.4
4,271,356 - -0.5
4,271,356 - +0.2
4,271,356 - +0.5
4,271,358 + +0.5
4,271,358 + -0.7
4,271,359 - -0.1
4,271,376 - -2.2
4,271,389 + +0.9
4,271,389 + -0.5
4,271,389 + +2.5
4,271,389 + -0.8
4,271,389 + +2.0
4,271,389 + -1.1
4,271,445 + +0.9
4,271,445 + +1.8
4,271,446 - +0.5
4,271,446 - +0.5
4,271,446 - -1.4
4,271,536 - -2.8
4,271,536 - -0.2
4,271,693 + Psyr_3590 0.31 -1.9
4,271,693 + Psyr_3590 0.31 +0.9
4,271,694 - Psyr_3590 0.31 +1.2
4,271,694 - Psyr_3590 0.31 +3.2
4,271,818 - Psyr_3590 0.57 -1.0
4,272,168 + -1.1
4,272,169 - +0.9
4,272,196 + +0.2
4,272,196 + -0.6
4,272,196 + +0.3
4,272,196 + +0.6
4,272,196 + -1.6
4,272,197 - -1.9
4,272,197 - -0.1
4,272,197 - +0.4
4,272,197 - -0.2
4,272,197 - +1.2
4,272,503 + Psyr_3591 0.29 -0.4
4,272,504 - Psyr_3591 0.29 -0.7
4,272,504 - Psyr_3591 0.29 -2.3
4,272,504 - Psyr_3591 0.29 -0.5
4,272,511 + Psyr_3591 0.29 +0.2
4,272,512 - Psyr_3591 0.30 -1.6
4,272,671 + Psyr_3591 0.41 +0.9
4,272,692 + Psyr_3591 0.43 -0.3
4,272,692 + Psyr_3591 0.43 -2.3
4,273,543 - Psyr_3592 0.14 +0.3
4,273,606 - Psyr_3592 0.25 -0.6
4,273,606 - Psyr_3592 0.25 +0.3
4,273,606 - Psyr_3592 0.25 +0.1
4,273,606 - Psyr_3592 0.25 -0.8
4,273,650 + Psyr_3592 0.33 -0.5
4,273,650 + Psyr_3592 0.33 -1.1
4,273,650 + Psyr_3592 0.33 +0.8
4,273,650 + Psyr_3592 0.33 +2.6
4,273,651 - Psyr_3592 0.34 -0.3
4,273,651 - Psyr_3592 0.34 +0.1
4,274,056 + +1.2
4,274,056 + +1.7
4,274,057 - -0.3
4,274,057 - -0.3
4,274,101 - -0.5
4,274,139 + -0.7
4,274,139 + +2.0
4,274,139 + +0.1
4,274,140 - -0.8
4,274,140 - -2.3
4,274,140 - -0.3
4,274,140 - +0.9
4,274,140 - -0.1
4,274,140 - +1.5
4,274,160 - +1.5
4,274,274 - -0.9
4,274,296 + -1.5
4,274,297 - -1.1
4,274,416 + Psyr_3593 0.15 -0.3
4,274,416 + Psyr_3593 0.15 +1.5
4,274,416 + Psyr_3593 0.15 -1.1
4,274,416 + Psyr_3593 0.15 +2.1
4,274,416 + Psyr_3593 0.15 +1.7
4,274,416 + Psyr_3593 0.15 +0.1
4,274,416 + Psyr_3593 0.15 -0.2
4,274,416 + Psyr_3593 0.15 -1.1
4,274,416 + Psyr_3593 0.15 -0.6
4,274,416 + Psyr_3593 0.15 +0.7
4,274,416 + Psyr_3593 0.15 +0.1
4,274,416 + Psyr_3593 0.15 -0.7
4,274,416 + Psyr_3593 0.15 -0.4
4,274,416 + Psyr_3593 0.15 +0.1
4,274,416 + Psyr_3593 0.15 +0.5
4,274,416 + Psyr_3593 0.15 +0.1
4,274,417 - Psyr_3593 0.15 +0.4
4,274,417 - Psyr_3593 0.15 -1.1
4,274,417 - Psyr_3593 0.15 +0.2
4,274,417 - Psyr_3593 0.15 +2.5
4,274,417 - Psyr_3593 0.15 -0.5
4,274,417 - Psyr_3593 0.15 -1.0
4,274,417 - Psyr_3593 0.15 +0.2
4,274,417 - Psyr_3593 0.15 +1.5
4,274,417 - Psyr_3593 0.15 -2.0
4,274,417 - Psyr_3593 0.15 -1.4
4,274,417 - Psyr_3593 0.15 +3.3
4,274,417 - Psyr_3593 0.15 -0.8
4,274,417 - Psyr_3593 0.15 -0.9
4,274,417 - Psyr_3593 0.15 +1.9
4,274,417 - Psyr_3593 0.15 -0.7
4,274,417 - Psyr_3593 0.15 -1.2
4,274,417 - Psyr_3593 0.15 +0.2
4,274,417 - Psyr_3593 0.15 +0.3
4,274,417 - Psyr_3593 0.15 -0.1
4,274,448 - Psyr_3593 0.17 -0.5

Or see this region's nucleotide sequence