Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3278

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3277 and Psyr_3278 overlap by 4 nucleotidesPsyr_3278 and Psyr_3279 are separated by 204 nucleotidesPsyr_3279 and Psyr_3280 are separated by 1 nucleotides Psyr_3277: Psyr_3277 - Phospholipase D/Transphosphatidylase, at 3,924,848 to 3,926,098 _3277 Psyr_3278: Psyr_3278 - Endonuclease/exonuclease/phosphatase, at 3,926,095 to 3,926,880 _3278 Psyr_3279: Psyr_3279 - Cytochrome B561, bacterial, at 3,927,085 to 3,927,624 _3279 Psyr_3280: Psyr_3280 - methylthioadenosine phosphorylase, at 3,927,626 to 3,928,366 _3280 Position (kb) 3926 3927Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3925.251 kb on + strand, within Psyr_3277at 3925.251 kb on + strand, within Psyr_3277at 3925.252 kb on - strand, within Psyr_3277at 3925.252 kb on - strand, within Psyr_3277at 3925.284 kb on + strand, within Psyr_3277at 3925.284 kb on + strand, within Psyr_3277at 3925.285 kb on - strand, within Psyr_3277at 3925.285 kb on - strand, within Psyr_3277at 3925.285 kb on - strand, within Psyr_3277at 3925.285 kb on - strand, within Psyr_3277at 3925.285 kb on - strand, within Psyr_3277at 3925.290 kb on + strand, within Psyr_3277at 3925.290 kb on + strand, within Psyr_3277at 3925.291 kb on - strand, within Psyr_3277at 3925.291 kb on - strand, within Psyr_3277at 3925.291 kb on - strand, within Psyr_3277at 3925.291 kb on - strand, within Psyr_3277at 3925.291 kb on - strand, within Psyr_3277at 3925.291 kb on - strand, within Psyr_3277at 3925.445 kb on - strand, within Psyr_3277at 3925.445 kb on - strand, within Psyr_3277at 3925.595 kb on - strand, within Psyr_3277at 3925.684 kb on + strand, within Psyr_3277at 3925.685 kb on - strand, within Psyr_3277at 3925.698 kb on + strand, within Psyr_3277at 3925.698 kb on + strand, within Psyr_3277at 3925.698 kb on + strand, within Psyr_3277at 3925.698 kb on + strand, within Psyr_3277at 3925.699 kb on - strand, within Psyr_3277at 3925.699 kb on - strand, within Psyr_3277at 3925.699 kb on - strand, within Psyr_3277at 3925.747 kb on + strand, within Psyr_3277at 3925.876 kb on - strand, within Psyr_3277at 3926.006 kb on + strandat 3926.006 kb on + strandat 3926.006 kb on + strandat 3926.006 kb on + strandat 3926.006 kb on + strandat 3926.007 kb on - strandat 3926.007 kb on - strandat 3926.007 kb on - strandat 3926.007 kb on - strandat 3926.007 kb on - strandat 3926.028 kb on + strandat 3926.057 kb on + strandat 3926.058 kb on - strandat 3926.089 kb on + strandat 3926.090 kb on - strandat 3926.098 kb on + strandat 3926.099 kb on - strandat 3926.099 kb on - strandat 3926.099 kb on - strandat 3926.195 kb on + strand, within Psyr_3278at 3926.195 kb on + strand, within Psyr_3278at 3926.195 kb on + strand, within Psyr_3278at 3926.195 kb on + strand, within Psyr_3278at 3926.195 kb on + strand, within Psyr_3278at 3926.195 kb on + strand, within Psyr_3278at 3926.195 kb on + strand, within Psyr_3278at 3926.196 kb on - strand, within Psyr_3278at 3926.196 kb on - strand, within Psyr_3278at 3926.196 kb on - strand, within Psyr_3278at 3926.196 kb on - strand, within Psyr_3278at 3926.196 kb on - strand, within Psyr_3278at 3926.364 kb on + strand, within Psyr_3278at 3926.383 kb on - strand, within Psyr_3278at 3926.446 kb on + strand, within Psyr_3278at 3926.446 kb on + strand, within Psyr_3278at 3926.546 kb on + strand, within Psyr_3278at 3926.732 kb on - strand, within Psyr_3278at 3926.815 kb on + strandat 3926.816 kb on - strandat 3926.816 kb on - strandat 3926.816 kb on - strandat 3926.910 kb on + strandat 3926.911 kb on - strandat 3926.911 kb on - strandat 3926.960 kb on + strandat 3926.960 kb on + strandat 3926.960 kb on + strandat 3926.961 kb on - strandat 3926.961 kb on - strandat 3926.961 kb on - strandat 3926.970 kb on - strandat 3927.038 kb on + strandat 3927.038 kb on + strandat 3927.038 kb on + strandat 3927.039 kb on - strandat 3927.092 kb on + strandat 3927.092 kb on + strandat 3927.093 kb on - strandat 3927.093 kb on - strandat 3927.093 kb on - strandat 3927.166 kb on + strand, within Psyr_3279at 3927.398 kb on + strand, within Psyr_3279at 3927.541 kb on + strand, within Psyr_3279at 3927.541 kb on + strand, within Psyr_3279at 3927.541 kb on + strand, within Psyr_3279at 3927.541 kb on + strand, within Psyr_3279at 3927.542 kb on - strand, within Psyr_3279at 3927.542 kb on - strand, within Psyr_3279at 3927.542 kb on - strand, within Psyr_3279at 3927.542 kb on - strand, within Psyr_3279at 3927.542 kb on - strand, within Psyr_3279at 3927.542 kb on - strand, within Psyr_3279at 3927.542 kb on - strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.544 kb on + strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.545 kb on - strand, within Psyr_3279at 3927.622 kb on + strandat 3927.622 kb on + strandat 3927.623 kb on - strandat 3927.623 kb on - strandat 3927.623 kb on - strandat 3927.766 kb on - strand, within Psyr_3280

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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3,925,251 + Psyr_3277 0.32 +1.3
3,925,251 + Psyr_3277 0.32 -0.5
3,925,252 - Psyr_3277 0.32 +0.3
3,925,252 - Psyr_3277 0.32 +4.0
3,925,284 + Psyr_3277 0.35 -0.2
3,925,284 + Psyr_3277 0.35 +1.0
3,925,285 - Psyr_3277 0.35 +2.6
3,925,285 - Psyr_3277 0.35 -0.5
3,925,285 - Psyr_3277 0.35 -0.9
3,925,285 - Psyr_3277 0.35 -0.7
3,925,285 - Psyr_3277 0.35 -0.8
3,925,290 + Psyr_3277 0.35 +1.6
3,925,290 + Psyr_3277 0.35 -1.6
3,925,291 - Psyr_3277 0.35 -0.3
3,925,291 - Psyr_3277 0.35 -1.4
3,925,291 - Psyr_3277 0.35 +0.0
3,925,291 - Psyr_3277 0.35 +0.6
3,925,291 - Psyr_3277 0.35 +0.7
3,925,291 - Psyr_3277 0.35 +0.4
3,925,445 - Psyr_3277 0.48 -0.0
3,925,445 - Psyr_3277 0.48 +0.4
3,925,595 - Psyr_3277 0.60 +0.3
3,925,684 + Psyr_3277 0.67 -0.3
3,925,685 - Psyr_3277 0.67 -1.1
3,925,698 + Psyr_3277 0.68 -0.1
3,925,698 + Psyr_3277 0.68 -0.7
3,925,698 + Psyr_3277 0.68 +1.2
3,925,698 + Psyr_3277 0.68 +0.5
3,925,699 - Psyr_3277 0.68 -0.3
3,925,699 - Psyr_3277 0.68 -0.3
3,925,699 - Psyr_3277 0.68 -1.2
3,925,747 + Psyr_3277 0.72 +0.1
3,925,876 - Psyr_3277 0.82 -0.5
3,926,006 + -0.3
3,926,006 + +0.4
3,926,006 + -0.2
3,926,006 + +0.7
3,926,006 + -1.6
3,926,007 - +0.6
3,926,007 - -0.1
3,926,007 - -0.8
3,926,007 - -0.6
3,926,007 - +1.6
3,926,028 + +0.2
3,926,057 + +0.3
3,926,058 - -1.1
3,926,089 + +0.6
3,926,090 - -0.8
3,926,098 + -0.0
3,926,099 - +0.6
3,926,099 - -1.0
3,926,099 - -0.8
3,926,195 + Psyr_3278 0.13 -1.1
3,926,195 + Psyr_3278 0.13 -0.7
3,926,195 + Psyr_3278 0.13 +0.5
3,926,195 + Psyr_3278 0.13 -1.8
3,926,195 + Psyr_3278 0.13 +0.0
3,926,195 + Psyr_3278 0.13 +0.4
3,926,195 + Psyr_3278 0.13 -1.2
3,926,196 - Psyr_3278 0.13 -0.8
3,926,196 - Psyr_3278 0.13 -0.8
3,926,196 - Psyr_3278 0.13 -0.6
3,926,196 - Psyr_3278 0.13 -0.2
3,926,196 - Psyr_3278 0.13 -2.3
3,926,364 + Psyr_3278 0.34 -1.9
3,926,383 - Psyr_3278 0.37 +0.3
3,926,446 + Psyr_3278 0.45 -1.0
3,926,446 + Psyr_3278 0.45 +1.7
3,926,546 + Psyr_3278 0.57 -1.4
3,926,732 - Psyr_3278 0.81 -0.2
3,926,815 + +0.4
3,926,816 - -1.0
3,926,816 - -0.2
3,926,816 - -0.4
3,926,910 + -0.1
3,926,911 - -1.6
3,926,911 - -0.9
3,926,960 + +3.3
3,926,960 + +1.0
3,926,960 + +0.1
3,926,961 - -1.7
3,926,961 - -2.9
3,926,961 - +2.6
3,926,970 - +1.0
3,927,038 + +2.0
3,927,038 + +0.9
3,927,038 + -0.3
3,927,039 - -0.1
3,927,092 + -0.1
3,927,092 + -0.5
3,927,093 - +0.7
3,927,093 - -1.5
3,927,093 - -0.4
3,927,166 + Psyr_3279 0.15 -1.1
3,927,398 + Psyr_3279 0.58 -0.6
3,927,541 + Psyr_3279 0.84 -1.3
3,927,541 + Psyr_3279 0.84 +0.5
3,927,541 + Psyr_3279 0.84 +0.4
3,927,541 + Psyr_3279 0.84 +2.0
3,927,542 - Psyr_3279 0.85 -0.5
3,927,542 - Psyr_3279 0.85 -0.1
3,927,542 - Psyr_3279 0.85 +0.2
3,927,542 - Psyr_3279 0.85 -0.3
3,927,542 - Psyr_3279 0.85 -0.7
3,927,542 - Psyr_3279 0.85 -0.0
3,927,542 - Psyr_3279 0.85 +0.2
3,927,544 + Psyr_3279 0.85 +0.2
3,927,544 + Psyr_3279 0.85 -2.0
3,927,544 + Psyr_3279 0.85 +0.9
3,927,544 + Psyr_3279 0.85 -1.3
3,927,544 + Psyr_3279 0.85 -0.0
3,927,544 + Psyr_3279 0.85 -0.6
3,927,544 + Psyr_3279 0.85 +0.3
3,927,544 + Psyr_3279 0.85 +1.0
3,927,545 - Psyr_3279 0.85 -0.1
3,927,545 - Psyr_3279 0.85 -0.1
3,927,545 - Psyr_3279 0.85 +2.0
3,927,545 - Psyr_3279 0.85 -0.9
3,927,545 - Psyr_3279 0.85 +0.5
3,927,545 - Psyr_3279 0.85 +0.2
3,927,545 - Psyr_3279 0.85 -0.2
3,927,545 - Psyr_3279 0.85 +2.6
3,927,545 - Psyr_3279 0.85 +0.1
3,927,545 - Psyr_3279 0.85 +0.1
3,927,622 + -2.0
3,927,622 + -0.0
3,927,623 - -1.1
3,927,623 - -0.6
3,927,623 - -1.3
3,927,766 - Psyr_3280 0.19 +1.7

Or see this region's nucleotide sequence