Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2098

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2097 and Psyr_2098 are separated by 87 nucleotidesPsyr_2098 and Psyr_2099 are separated by 10 nucleotides Psyr_2097: Psyr_2097 - Thrombospondin type 3 repeat:OmpA/MotB:OmpF, at 2,444,715 to 2,445,749 _2097 Psyr_2098: Psyr_2098 - uroporphyrinogen-III C-methyltransferase, at 2,445,837 to 2,446,598 _2098 Psyr_2099: Psyr_2099 - assimilatory nitrate reductase (NADH) alpha subunit apoprotein, at 2,446,609 to 2,449,329 _2099 Position (kb) 2445 2446 2447Strain fitness (log2 ratio) -2 -1 0 1 2at 2445.462 kb on + strand, within Psyr_2097at 2445.558 kb on + strand, within Psyr_2097at 2445.618 kb on + strand, within Psyr_2097at 2445.747 kb on + strandat 2445.748 kb on - strandat 2445.748 kb on - strandat 2445.895 kb on + strandat 2445.896 kb on - strandat 2446.099 kb on + strand, within Psyr_2098at 2446.099 kb on + strand, within Psyr_2098at 2446.099 kb on + strand, within Psyr_2098at 2446.100 kb on - strand, within Psyr_2098at 2446.100 kb on - strand, within Psyr_2098at 2446.194 kb on + strand, within Psyr_2098at 2446.194 kb on + strand, within Psyr_2098at 2446.194 kb on + strand, within Psyr_2098at 2446.195 kb on - strand, within Psyr_2098at 2446.195 kb on - strand, within Psyr_2098at 2446.197 kb on - strand, within Psyr_2098at 2446.251 kb on - strand, within Psyr_2098at 2446.251 kb on - strand, within Psyr_2098at 2446.376 kb on - strand, within Psyr_2098at 2446.584 kb on + strandat 2446.584 kb on + strandat 2446.584 kb on + strandat 2446.584 kb on + strandat 2446.585 kb on - strandat 2446.585 kb on - strandat 2446.585 kb on - strandat 2446.645 kb on + strandat 2446.646 kb on - strandat 2446.646 kb on - strandat 2446.926 kb on + strand, within Psyr_2099at 2446.926 kb on + strand, within Psyr_2099at 2446.927 kb on - strand, within Psyr_2099at 2446.927 kb on - strand, within Psyr_2099at 2446.979 kb on + strand, within Psyr_2099at 2447.011 kb on + strand, within Psyr_2099at 2447.072 kb on - strand, within Psyr_2099at 2447.114 kb on + strand, within Psyr_2099at 2447.114 kb on + strand, within Psyr_2099at 2447.115 kb on - strand, within Psyr_2099at 2447.591 kb on + strand, within Psyr_2099at 2447.591 kb on + strand, within Psyr_2099at 2447.591 kb on + strand, within Psyr_2099at 2447.591 kb on + strand, within Psyr_2099at 2447.592 kb on - strand, within Psyr_2099at 2447.592 kb on - strand, within Psyr_2099at 2447.592 kb on - strand, within Psyr_2099

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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2,445,462 + Psyr_2097 0.72 -1.9
2,445,558 + Psyr_2097 0.81 -1.1
2,445,618 + Psyr_2097 0.87 -2.3
2,445,747 + +0.7
2,445,748 - -1.2
2,445,748 - -1.7
2,445,895 + +1.4
2,445,896 - -1.0
2,446,099 + Psyr_2098 0.34 -1.4
2,446,099 + Psyr_2098 0.34 +0.8
2,446,099 + Psyr_2098 0.34 -0.6
2,446,100 - Psyr_2098 0.35 -1.7
2,446,100 - Psyr_2098 0.35 +1.9
2,446,194 + Psyr_2098 0.47 +0.6
2,446,194 + Psyr_2098 0.47 +0.2
2,446,194 + Psyr_2098 0.47 -1.0
2,446,195 - Psyr_2098 0.47 -0.7
2,446,195 - Psyr_2098 0.47 -1.6
2,446,197 - Psyr_2098 0.47 -1.2
2,446,251 - Psyr_2098 0.54 -0.7
2,446,251 - Psyr_2098 0.54 -1.0
2,446,376 - Psyr_2098 0.71 +0.5
2,446,584 + +0.3
2,446,584 + -0.4
2,446,584 + +1.6
2,446,584 + +0.4
2,446,585 - -0.1
2,446,585 - -0.7
2,446,585 - -2.3
2,446,645 + -0.3
2,446,646 - -1.6
2,446,646 - +1.7
2,446,926 + Psyr_2099 0.12 +0.4
2,446,926 + Psyr_2099 0.12 -0.2
2,446,927 - Psyr_2099 0.12 -0.7
2,446,927 - Psyr_2099 0.12 -1.1
2,446,979 + Psyr_2099 0.14 -0.4
2,447,011 + Psyr_2099 0.15 -1.0
2,447,072 - Psyr_2099 0.17 +0.2
2,447,114 + Psyr_2099 0.19 -0.1
2,447,114 + Psyr_2099 0.19 -1.3
2,447,115 - Psyr_2099 0.19 -1.0
2,447,591 + Psyr_2099 0.36 -0.2
2,447,591 + Psyr_2099 0.36 +1.5
2,447,591 + Psyr_2099 0.36 +0.6
2,447,591 + Psyr_2099 0.36 +0.2
2,447,592 - Psyr_2099 0.36 +1.2
2,447,592 - Psyr_2099 0.36 -0.5
2,447,592 - Psyr_2099 0.36 +0.3

Or see this region's nucleotide sequence