Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1721 and Psyr_1722 are separated by 209 nucleotides Psyr_1722 and Psyr_1723 are separated by 47 nucleotides Psyr_1723 and Psyr_1724 are separated by 367 nucleotides
Psyr_1721: Psyr_1721 - moxR protein, putative, at 1,950,436 to 1,951,395
_1721
Psyr_1722: Psyr_1722 - Amidohydrolase 2, at 1,951,605 to 1,952,351
_1722
Psyr_1723: Psyr_1723 - conserved hypothetical protein, at 1,952,399 to 1,952,758
_1723
Psyr_1724: Psyr_1724 - glutamate dehydrogenase (NAD), at 1,953,126 to 1,957,982
_1724
Position (kb)
1951
1952
1953 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1950.722 kb on + strand, within Psyr_1721 at 1950.722 kb on + strand, within Psyr_1721 at 1950.723 kb on - strand, within Psyr_1721 at 1950.723 kb on - strand, within Psyr_1721 at 1950.746 kb on + strand, within Psyr_1721 at 1950.746 kb on + strand, within Psyr_1721 at 1950.746 kb on + strand, within Psyr_1721 at 1950.747 kb on - strand, within Psyr_1721 at 1950.747 kb on - strand, within Psyr_1721 at 1950.747 kb on - strand, within Psyr_1721 at 1950.995 kb on + strand, within Psyr_1721 at 1950.995 kb on + strand, within Psyr_1721 at 1950.995 kb on + strand, within Psyr_1721 at 1950.996 kb on - strand, within Psyr_1721 at 1950.996 kb on - strand, within Psyr_1721 at 1951.455 kb on + strand at 1951.455 kb on + strand at 1951.531 kb on + strand at 1951.532 kb on - strand at 1951.532 kb on - strand at 1951.532 kb on - strand at 1951.532 kb on - strand at 1951.539 kb on + strand at 1951.539 kb on + strand at 1951.547 kb on + strand at 1951.548 kb on - strand at 1951.570 kb on + strand at 1951.570 kb on + strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.833 kb on + strand, within Psyr_1722 at 1951.960 kb on + strand, within Psyr_1722 at 1951.960 kb on + strand, within Psyr_1722 at 1951.960 kb on + strand, within Psyr_1722 at 1951.961 kb on - strand, within Psyr_1722 at 1951.961 kb on - strand, within Psyr_1722 at 1951.961 kb on - strand, within Psyr_1722 at 1952.174 kb on - strand, within Psyr_1722 at 1952.251 kb on + strand, within Psyr_1722 at 1952.418 kb on + strand at 1952.419 kb on - strand at 1952.419 kb on - strand at 1952.448 kb on - strand at 1952.709 kb on + strand, within Psyr_1723 at 1952.818 kb on + strand at 1952.818 kb on + strand at 1952.818 kb on + strand at 1952.844 kb on + strand at 1952.845 kb on - strand at 1952.854 kb on - strand at 1952.874 kb on + strand at 1952.874 kb on + strand at 1952.875 kb on - strand at 1952.875 kb on - strand at 1952.875 kb on - strand at 1952.875 kb on - strand at 1952.939 kb on + strand at 1952.939 kb on + strand at 1952.978 kb on + strand at 1952.978 kb on + strand at 1952.978 kb on + strand at 1952.979 kb on - strand at 1952.979 kb on - strand at 1952.979 kb on - strand at 1952.979 kb on - strand at 1953.013 kb on + strand at 1953.013 kb on + strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.018 kb on + strand at 1953.018 kb on + strand at 1953.018 kb on + strand at 1953.018 kb on + strand at 1953.019 kb on - strand at 1953.019 kb on - strand at 1953.024 kb on + strand at 1953.024 kb on + strand at 1953.102 kb on - strand at 1953.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 1,950,722 + Psyr_1721 0.30 -0.8 1,950,722 + Psyr_1721 0.30 +0.9 1,950,723 - Psyr_1721 0.30 -0.4 1,950,723 - Psyr_1721 0.30 -0.2 1,950,746 + Psyr_1721 0.32 +1.2 1,950,746 + Psyr_1721 0.32 -1.8 1,950,746 + Psyr_1721 0.32 -0.8 1,950,747 - Psyr_1721 0.32 -1.3 1,950,747 - Psyr_1721 0.32 +1.3 1,950,747 - Psyr_1721 0.32 +0.7 1,950,995 + Psyr_1721 0.58 -1.0 1,950,995 + Psyr_1721 0.58 -2.5 1,950,995 + Psyr_1721 0.58 -0.3 1,950,996 - Psyr_1721 0.58 -0.4 1,950,996 - Psyr_1721 0.58 -1.2 1,951,455 + -0.4 1,951,455 + +1.7 1,951,531 + +0.0 1,951,532 - -0.1 1,951,532 - +1.6 1,951,532 - +0.1 1,951,532 - +2.1 1,951,539 + +0.6 1,951,539 + -0.1 1,951,547 + -0.9 1,951,548 - -0.0 1,951,570 + -1.0 1,951,570 + -0.7 1,951,571 - -1.6 1,951,571 - -0.3 1,951,571 - -0.2 1,951,571 - +0.6 1,951,571 - +2.0 1,951,833 + Psyr_1722 0.31 -1.0 1,951,960 + Psyr_1722 0.48 +0.5 1,951,960 + Psyr_1722 0.48 -3.5 1,951,960 + Psyr_1722 0.48 -1.5 1,951,961 - Psyr_1722 0.48 -0.7 1,951,961 - Psyr_1722 0.48 -0.6 1,951,961 - Psyr_1722 0.48 -1.3 1,952,174 - Psyr_1722 0.76 +0.4 1,952,251 + Psyr_1722 0.86 +0.3 1,952,418 + +0.0 1,952,419 - -0.0 1,952,419 - -1.6 1,952,448 - -1.7 1,952,709 + Psyr_1723 0.86 +0.8 1,952,818 + -1.0 1,952,818 + -0.9 1,952,818 + -0.0 1,952,844 + -1.8 1,952,845 - -2.3 1,952,854 - +0.0 1,952,874 + +0.1 1,952,874 + +0.1 1,952,875 - +0.9 1,952,875 - -0.9 1,952,875 - +0.3 1,952,875 - -0.2 1,952,939 + -1.5 1,952,939 + -1.3 1,952,978 + -1.1 1,952,978 + -0.0 1,952,978 + +1.9 1,952,979 - -1.0 1,952,979 - -0.5 1,952,979 - -1.0 1,952,979 - -0.4 1,953,013 + -1.1 1,953,013 + +1.1 1,953,014 - -0.4 1,953,014 - -0.8 1,953,014 - +2.8 1,953,014 - +0.2 1,953,014 - -0.6 1,953,018 + -0.9 1,953,018 + -1.3 1,953,018 + +0.6 1,953,018 + -0.5 1,953,019 - -0.2 1,953,019 - -1.3 1,953,024 + -0.7 1,953,024 + +1.9 1,953,102 - -1.4 1,953,119 - +1.3
Or see this region's nucleotide sequence