Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1722

Experiment: KB with Harmol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1721 and Psyr_1722 are separated by 209 nucleotidesPsyr_1722 and Psyr_1723 are separated by 47 nucleotidesPsyr_1723 and Psyr_1724 are separated by 367 nucleotides Psyr_1721: Psyr_1721 - moxR protein, putative, at 1,950,436 to 1,951,395 _1721 Psyr_1722: Psyr_1722 - Amidohydrolase 2, at 1,951,605 to 1,952,351 _1722 Psyr_1723: Psyr_1723 - conserved hypothetical protein, at 1,952,399 to 1,952,758 _1723 Psyr_1724: Psyr_1724 - glutamate dehydrogenase (NAD), at 1,953,126 to 1,957,982 _1724 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1950.722 kb on + strand, within Psyr_1721at 1950.722 kb on + strand, within Psyr_1721at 1950.723 kb on - strand, within Psyr_1721at 1950.723 kb on - strand, within Psyr_1721at 1950.746 kb on + strand, within Psyr_1721at 1950.746 kb on + strand, within Psyr_1721at 1950.746 kb on + strand, within Psyr_1721at 1950.747 kb on - strand, within Psyr_1721at 1950.747 kb on - strand, within Psyr_1721at 1950.747 kb on - strand, within Psyr_1721at 1950.995 kb on + strand, within Psyr_1721at 1950.995 kb on + strand, within Psyr_1721at 1950.995 kb on + strand, within Psyr_1721at 1950.996 kb on - strand, within Psyr_1721at 1950.996 kb on - strand, within Psyr_1721at 1951.455 kb on + strandat 1951.455 kb on + strandat 1951.531 kb on + strandat 1951.532 kb on - strandat 1951.532 kb on - strandat 1951.532 kb on - strandat 1951.532 kb on - strandat 1951.539 kb on + strandat 1951.539 kb on + strandat 1951.547 kb on + strandat 1951.548 kb on - strandat 1951.570 kb on + strandat 1951.570 kb on + strandat 1951.571 kb on - strandat 1951.571 kb on - strandat 1951.571 kb on - strandat 1951.571 kb on - strandat 1951.571 kb on - strandat 1951.833 kb on + strand, within Psyr_1722at 1951.960 kb on + strand, within Psyr_1722at 1951.960 kb on + strand, within Psyr_1722at 1951.960 kb on + strand, within Psyr_1722at 1951.961 kb on - strand, within Psyr_1722at 1951.961 kb on - strand, within Psyr_1722at 1951.961 kb on - strand, within Psyr_1722at 1952.174 kb on - strand, within Psyr_1722at 1952.251 kb on + strand, within Psyr_1722at 1952.418 kb on + strandat 1952.419 kb on - strandat 1952.419 kb on - strandat 1952.448 kb on - strandat 1952.709 kb on + strand, within Psyr_1723at 1952.818 kb on + strandat 1952.818 kb on + strandat 1952.818 kb on + strandat 1952.844 kb on + strandat 1952.845 kb on - strandat 1952.854 kb on - strandat 1952.874 kb on + strandat 1952.874 kb on + strandat 1952.875 kb on - strandat 1952.875 kb on - strandat 1952.875 kb on - strandat 1952.875 kb on - strandat 1952.939 kb on + strandat 1952.939 kb on + strandat 1952.978 kb on + strandat 1952.978 kb on + strandat 1952.978 kb on + strandat 1952.979 kb on - strandat 1952.979 kb on - strandat 1952.979 kb on - strandat 1952.979 kb on - strandat 1953.013 kb on + strandat 1953.013 kb on + strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.018 kb on + strandat 1953.018 kb on + strandat 1953.018 kb on + strandat 1953.018 kb on + strandat 1953.019 kb on - strandat 1953.019 kb on - strandat 1953.024 kb on + strandat 1953.024 kb on + strandat 1953.102 kb on - strandat 1953.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol 10 mM
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1,950,722 + Psyr_1721 0.30 -0.8
1,950,722 + Psyr_1721 0.30 +0.9
1,950,723 - Psyr_1721 0.30 -0.4
1,950,723 - Psyr_1721 0.30 -0.2
1,950,746 + Psyr_1721 0.32 +1.2
1,950,746 + Psyr_1721 0.32 -1.8
1,950,746 + Psyr_1721 0.32 -0.8
1,950,747 - Psyr_1721 0.32 -1.3
1,950,747 - Psyr_1721 0.32 +1.3
1,950,747 - Psyr_1721 0.32 +0.7
1,950,995 + Psyr_1721 0.58 -1.0
1,950,995 + Psyr_1721 0.58 -2.5
1,950,995 + Psyr_1721 0.58 -0.3
1,950,996 - Psyr_1721 0.58 -0.4
1,950,996 - Psyr_1721 0.58 -1.2
1,951,455 + -0.4
1,951,455 + +1.7
1,951,531 + +0.0
1,951,532 - -0.1
1,951,532 - +1.6
1,951,532 - +0.1
1,951,532 - +2.1
1,951,539 + +0.6
1,951,539 + -0.1
1,951,547 + -0.9
1,951,548 - -0.0
1,951,570 + -1.0
1,951,570 + -0.7
1,951,571 - -1.6
1,951,571 - -0.3
1,951,571 - -0.2
1,951,571 - +0.6
1,951,571 - +2.0
1,951,833 + Psyr_1722 0.31 -1.0
1,951,960 + Psyr_1722 0.48 +0.5
1,951,960 + Psyr_1722 0.48 -3.5
1,951,960 + Psyr_1722 0.48 -1.5
1,951,961 - Psyr_1722 0.48 -0.7
1,951,961 - Psyr_1722 0.48 -0.6
1,951,961 - Psyr_1722 0.48 -1.3
1,952,174 - Psyr_1722 0.76 +0.4
1,952,251 + Psyr_1722 0.86 +0.3
1,952,418 + +0.0
1,952,419 - -0.0
1,952,419 - -1.6
1,952,448 - -1.7
1,952,709 + Psyr_1723 0.86 +0.8
1,952,818 + -1.0
1,952,818 + -0.9
1,952,818 + -0.0
1,952,844 + -1.8
1,952,845 - -2.3
1,952,854 - +0.0
1,952,874 + +0.1
1,952,874 + +0.1
1,952,875 - +0.9
1,952,875 - -0.9
1,952,875 - +0.3
1,952,875 - -0.2
1,952,939 + -1.5
1,952,939 + -1.3
1,952,978 + -1.1
1,952,978 + -0.0
1,952,978 + +1.9
1,952,979 - -1.0
1,952,979 - -0.5
1,952,979 - -1.0
1,952,979 - -0.4
1,953,013 + -1.1
1,953,013 + +1.1
1,953,014 - -0.4
1,953,014 - -0.8
1,953,014 - +2.8
1,953,014 - +0.2
1,953,014 - -0.6
1,953,018 + -0.9
1,953,018 + -1.3
1,953,018 + +0.6
1,953,018 + -0.5
1,953,019 - -0.2
1,953,019 - -1.3
1,953,024 + -0.7
1,953,024 + +1.9
1,953,102 - -1.4
1,953,119 - +1.3

Or see this region's nucleotide sequence