Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1545 and Psyr_1546 are separated by 66 nucleotides Psyr_1546 and Psyr_1547 are separated by 9 nucleotides Psyr_1547 and Psyr_1548 are separated by 325 nucleotides
Psyr_1545: Psyr_1545 - Protein of unknown function UPF0118, at 1,738,835 to 1,739,905
_1545
Psyr_1546: Psyr_1546 - Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, at 1,739,972 to 1,740,445
_1546
Psyr_1547: Psyr_1547 - glycine cleavage system transcriptional repressor, at 1,740,455 to 1,741,018
_1547
Psyr_1548: Psyr_1548 - dihydrodipicolinate synthase, at 1,741,344 to 1,742,222
_1548
Position (kb) 1739
1740
1741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1739.073 kb on + strand, within Psyr_1545 at 1739.074 kb on - strand, within Psyr_1545 at 1739.074 kb on - strand, within Psyr_1545 at 1739.121 kb on + strand, within Psyr_1545 at 1739.150 kb on - strand, within Psyr_1545 at 1739.178 kb on + strand, within Psyr_1545 at 1739.178 kb on + strand, within Psyr_1545 at 1739.178 kb on + strand, within Psyr_1545 at 1739.179 kb on - strand, within Psyr_1545 at 1739.179 kb on - strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.327 kb on + strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.328 kb on - strand, within Psyr_1545 at 1739.403 kb on - strand, within Psyr_1545 at 1739.403 kb on - strand, within Psyr_1545 at 1739.403 kb on - strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.498 kb on - strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.546 kb on + strand, within Psyr_1545 at 1739.547 kb on - strand, within Psyr_1545 at 1739.547 kb on - strand, within Psyr_1545 at 1739.547 kb on - strand, within Psyr_1545 at 1739.594 kb on + strand, within Psyr_1545 at 1739.594 kb on + strand, within Psyr_1545 at 1739.594 kb on + strand, within Psyr_1545 at 1739.595 kb on - strand, within Psyr_1545 at 1739.672 kb on + strand, within Psyr_1545 at 1739.673 kb on - strand, within Psyr_1545 at 1740.002 kb on + strand at 1740.002 kb on + strand at 1740.003 kb on - strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.102 kb on + strand, within Psyr_1546 at 1740.102 kb on + strand, within Psyr_1546 at 1740.102 kb on + strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.114 kb on + strand, within Psyr_1546 at 1740.343 kb on - strand, within Psyr_1546 at 1740.343 kb on - strand, within Psyr_1546 at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.619 kb on - strand, within Psyr_1547 at 1740.714 kb on + strand, within Psyr_1547 at 1740.715 kb on - strand, within Psyr_1547 at 1740.723 kb on + strand, within Psyr_1547 at 1740.724 kb on - strand, within Psyr_1547 at 1741.029 kb on + strand at 1741.095 kb on + strand at 1741.095 kb on + strand at 1741.096 kb on - strand at 1741.096 kb on - strand at 1741.096 kb on - strand at 1741.096 kb on - strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 1,739,073 + Psyr_1545 0.22 -0.1 1,739,074 - Psyr_1545 0.22 -1.5 1,739,074 - Psyr_1545 0.22 -0.7 1,739,121 + Psyr_1545 0.27 -0.1 1,739,150 - Psyr_1545 0.29 +0.1 1,739,178 + Psyr_1545 0.32 +0.5 1,739,178 + Psyr_1545 0.32 +0.5 1,739,178 + Psyr_1545 0.32 +0.7 1,739,179 - Psyr_1545 0.32 -1.3 1,739,179 - Psyr_1545 0.32 +2.1 1,739,327 + Psyr_1545 0.46 -1.6 1,739,327 + Psyr_1545 0.46 -0.5 1,739,327 + Psyr_1545 0.46 -1.3 1,739,327 + Psyr_1545 0.46 -1.4 1,739,327 + Psyr_1545 0.46 +1.2 1,739,327 + Psyr_1545 0.46 +0.3 1,739,327 + Psyr_1545 0.46 -0.2 1,739,327 + Psyr_1545 0.46 -1.3 1,739,328 - Psyr_1545 0.46 -0.8 1,739,328 - Psyr_1545 0.46 -0.9 1,739,328 - Psyr_1545 0.46 -0.3 1,739,328 - Psyr_1545 0.46 -0.5 1,739,328 - +2.6 1,739,328 - Psyr_1545 0.46 +0.0 1,739,328 - Psyr_1545 0.46 +0.1 1,739,328 - Psyr_1545 0.46 +0.4 1,739,328 - Psyr_1545 0.46 +0.5 1,739,328 - Psyr_1545 0.46 +0.1 1,739,328 - Psyr_1545 0.46 -1.6 1,739,403 - Psyr_1545 0.53 +0.2 1,739,403 - Psyr_1545 0.53 -0.9 1,739,403 - Psyr_1545 0.53 +0.2 1,739,468 + Psyr_1545 0.59 -0.6 1,739,468 + Psyr_1545 0.59 -0.6 1,739,468 + Psyr_1545 0.59 +2.2 1,739,468 + Psyr_1545 0.59 -0.2 1,739,468 + Psyr_1545 0.59 -0.2 1,739,468 + Psyr_1545 0.59 -0.1 1,739,468 + Psyr_1545 0.59 -0.3 1,739,468 + Psyr_1545 0.59 -1.0 1,739,468 + Psyr_1545 0.59 +0.1 1,739,468 + Psyr_1545 0.59 -0.7 1,739,468 + Psyr_1545 0.59 +0.1 1,739,468 + Psyr_1545 0.59 -3.0 1,739,468 + Psyr_1545 0.59 +3.4 1,739,468 + Psyr_1545 0.59 -1.3 1,739,468 + Psyr_1545 0.59 +2.6 1,739,468 + Psyr_1545 0.59 +1.3 1,739,468 + Psyr_1545 0.59 +3.6 1,739,469 - Psyr_1545 0.59 +1.8 1,739,469 - Psyr_1545 0.59 +0.2 1,739,469 - Psyr_1545 0.59 +0.3 1,739,469 - Psyr_1545 0.59 -0.6 1,739,469 - Psyr_1545 0.59 +0.8 1,739,469 - Psyr_1545 0.59 +0.2 1,739,469 - Psyr_1545 0.59 -1.7 1,739,469 - Psyr_1545 0.59 -1.4 1,739,469 - Psyr_1545 0.59 +0.0 1,739,469 - Psyr_1545 0.59 -0.5 1,739,469 - Psyr_1545 0.59 +0.3 1,739,469 - Psyr_1545 0.59 -0.2 1,739,469 - Psyr_1545 0.59 -0.1 1,739,469 - Psyr_1545 0.59 +1.1 1,739,470 + Psyr_1545 0.59 -0.0 1,739,470 + Psyr_1545 0.59 +0.2 1,739,470 + Psyr_1545 0.59 +0.4 1,739,470 + Psyr_1545 0.59 +2.1 1,739,470 + Psyr_1545 0.59 -0.0 1,739,471 - Psyr_1545 0.59 +1.1 1,739,471 - Psyr_1545 0.59 +3.4 1,739,471 - Psyr_1545 0.59 +1.1 1,739,471 - Psyr_1545 0.59 +1.6 1,739,498 - Psyr_1545 0.62 +0.6 1,739,516 + Psyr_1545 0.64 +1.1 1,739,516 + Psyr_1545 0.64 +0.3 1,739,516 + Psyr_1545 0.64 -0.5 1,739,516 + Psyr_1545 0.64 +3.1 1,739,516 + Psyr_1545 0.64 +1.9 1,739,516 + Psyr_1545 0.64 +3.5 1,739,516 + Psyr_1545 0.64 -0.9 1,739,517 - Psyr_1545 0.64 +0.9 1,739,517 - Psyr_1545 0.64 -0.5 1,739,517 - Psyr_1545 0.64 +0.2 1,739,517 - Psyr_1545 0.64 -0.9 1,739,517 - Psyr_1545 0.64 -0.5 1,739,517 - Psyr_1545 0.64 +0.5 1,739,546 + Psyr_1545 0.66 +0.9 1,739,547 - Psyr_1545 0.66 -0.8 1,739,547 - Psyr_1545 0.66 +1.1 1,739,547 - Psyr_1545 0.66 -1.7 1,739,594 + Psyr_1545 0.71 +0.1 1,739,594 + Psyr_1545 0.71 -0.2 1,739,594 + Psyr_1545 0.71 -2.0 1,739,595 - Psyr_1545 0.71 +1.1 1,739,672 + Psyr_1545 0.78 +0.5 1,739,673 - Psyr_1545 0.78 +0.1 1,740,002 + +0.4 1,740,002 + +0.1 1,740,003 - +3.5 1,740,005 + -0.1 1,740,005 + -0.4 1,740,005 + -0.4 1,740,005 + -0.7 1,740,005 + +0.3 1,740,005 + +1.6 1,740,005 + -1.5 1,740,006 - +2.6 1,740,006 - +1.1 1,740,006 - +0.6 1,740,006 - -0.1 1,740,006 - -0.0 1,740,006 - +1.3 1,740,006 - -2.1 1,740,006 - +1.0 1,740,102 + Psyr_1546 0.27 -2.2 1,740,102 + Psyr_1546 0.27 -1.9 1,740,102 + Psyr_1546 0.27 -0.8 1,740,103 - Psyr_1546 0.28 -1.0 1,740,103 - Psyr_1546 0.28 +0.2 1,740,103 - Psyr_1546 0.28 -1.3 1,740,103 - Psyr_1546 0.28 -0.3 1,740,114 + Psyr_1546 0.30 -0.5 1,740,343 - Psyr_1546 0.78 +0.3 1,740,343 - Psyr_1546 0.78 -1.3 1,740,431 + -2.3 1,740,431 + +0.6 1,740,431 + +0.1 1,740,431 + -1.3 1,740,431 + +1.0 1,740,431 + +0.5 1,740,431 + +2.5 1,740,431 + +1.6 1,740,432 - +1.4 1,740,432 - +0.7 1,740,432 - +0.1 1,740,432 - +0.8 1,740,432 - -1.2 1,740,432 - -0.3 1,740,432 - -1.9 1,740,432 - +0.2 1,740,432 - +0.7 1,740,432 - -0.2 1,740,432 - -0.1 1,740,456 + +0.4 1,740,456 + -2.2 1,740,456 + +0.3 1,740,456 + +0.5 1,740,456 + +0.4 1,740,456 + -0.6 1,740,457 - +0.5 1,740,457 - -0.4 1,740,457 - +0.5 1,740,457 - +0.6 1,740,457 - +0.4 1,740,457 - +0.1 1,740,457 - +0.6 1,740,457 - -0.6 1,740,457 - +0.1 1,740,618 + Psyr_1547 0.29 -0.3 1,740,618 + Psyr_1547 0.29 +1.8 1,740,618 + Psyr_1547 0.29 -0.1 1,740,618 + Psyr_1547 0.29 +1.1 1,740,618 + Psyr_1547 0.29 -1.1 1,740,618 + Psyr_1547 0.29 -0.9 1,740,618 + Psyr_1547 0.29 -2.8 1,740,619 - Psyr_1547 0.29 -0.4 1,740,714 + Psyr_1547 0.46 +0.1 1,740,715 - Psyr_1547 0.46 -0.1 1,740,723 + Psyr_1547 0.48 +1.2 1,740,724 - Psyr_1547 0.48 +0.3 1,741,029 + -3.2 1,741,095 + -0.9 1,741,095 + -0.4 1,741,096 - -1.0 1,741,096 - -1.3 1,741,096 - -0.1 1,741,096 - +0.8 1,741,133 + -1.4 1,741,133 + +0.5 1,741,133 + -2.0 1,741,133 + -0.7 1,741,133 + +1.3 1,741,133 + -1.4 1,741,133 + -0.2 1,741,133 + -1.1 1,741,133 + -0.6 1,741,134 - +1.1 1,741,134 - -0.4 1,741,134 - -0.3 1,741,134 - -0.0 1,741,134 - +0.7 1,741,134 - -0.6 1,741,134 - -1.0 1,741,134 - -0.2 1,741,134 - +0.4 1,741,134 - +2.6 1,741,134 - -2.3 1,741,134 - -1.1 1,741,134 - +0.7 1,741,286 + -1.4 1,741,286 + +0.6 1,741,286 + -0.3 1,741,286 + +4.1 1,741,306 + -1.6
Or see this region's nucleotide sequence