Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0893

Experiment: KB with Harmol 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Harmol 10 mM
1,012,782	+				-1.8
1,012,782	+				-0.8
1,012,783	-				+1.2
1,012,783	-				-0.8
1,012,783	-				-0.9
1,012,783	-				+0.7
1,012,783	-				-1.4
1,012,783	-				-0.1
1,012,944	-		Psyr_0892	0.20	-0.8
1,013,025	-		Psyr_0892	0.33	-0.3
1,013,025	-		Psyr_0892	0.33	-0.7
1,013,123	+		Psyr_0892	0.49	-0.4
1,013,124	-		Psyr_0892	0.49	+0.4
1,013,124	-		Psyr_0892	0.49	+0.6
1,013,124	-		Psyr_0892	0.49	-1.0
1,013,297	+		Psyr_0892	0.78	+0.7
1,013,297	+		Psyr_0892	0.78	-0.2
1,013,297	+		Psyr_0892	0.78	-0.1
1,013,298	-		Psyr_0892	0.78	+1.2
1,013,298	-		Psyr_0892	0.78	-0.9
1,013,298	-		Psyr_0892	0.78	-2.5
1,013,298	-		Psyr_0892	0.78	+0.3
1,013,298	-		Psyr_0892	0.78	-0.2
1,013,425	+				+0.1
1,013,425	+				+0.3
1,013,425	+				+1.3
1,013,426	-				-0.8
1,013,426	-				-1.0
1,013,486	+				-0.4
1,013,486	+				-0.2
1,013,486	+				-0.3
1,013,486	+				-1.5
1,013,487	-				+2.5
1,013,487	-				+1.2
1,013,487	-				+0.6
1,013,487	-				-0.3
1,013,490	+				-0.6
1,013,512	+				-1.4
1,013,512	+				+3.2
1,013,512	+				-3.0
1,013,512	+				-1.5
1,013,512	+				-0.8
1,013,512	+				-1.0
1,013,513	-				-0.7
1,013,513	-				-2.2
1,013,513	-				-0.2
1,013,513	-				+0.8
1,013,677	+				+0.8
1,013,677	+				-0.8
1,013,677	+				-1.2
1,013,678	-				-1.2
1,013,696	+				-1.8
1,013,697	-				-0.0
1,013,697	-				-0.4
1,013,697	-				+1.2
1,013,719	+				+1.7
1,013,720	-				+1.4
1,013,765	+				-0.1
1,013,818	+		Psyr_0893	0.10	+0.3
1,013,818	+		Psyr_0893	0.10	-2.2
1,013,992	+		Psyr_0893	0.40	-0.2
1,013,993	-		Psyr_0893	0.40	-0.4
1,014,028	+		Psyr_0893	0.47	-0.6
1,014,029	-		Psyr_0893	0.47	-0.7
1,014,050	-		Psyr_0893	0.50	+0.9
1,014,064	+		Psyr_0893	0.53	+0.5
1,014,088	+		Psyr_0893	0.57	-0.6
1,014,089	-		Psyr_0893	0.57	+0.2
1,014,126	+		Psyr_0893	0.64	+0.3
1,014,126	+		Psyr_0893	0.64	+0.9
1,014,126	+		Psyr_0893	0.64	+1.6
1,014,126	+		Psyr_0893	0.64	+2.2
1,014,126	+		Psyr_0893	0.64	-1.8
1,014,127	-		Psyr_0893	0.64	-0.2
1,014,127	-		Psyr_0893	0.64	+0.1
1,014,127	-		Psyr_0893	0.64	-0.1
1,014,127	-		Psyr_0893	0.64	-0.8
1,014,127	-		Psyr_0893	0.64	+0.7
1,014,127	-		Psyr_0893	0.64	-1.2
1,014,127	-		Psyr_0893	0.64	-0.5
1,014,127	-		Psyr_0893	0.64	-1.5
1,014,127	-		Psyr_0893	0.64	-1.3
1,014,127	-		Psyr_0893	0.64	+0.2
1,014,138	-		Psyr_0893	0.66	-1.1
1,014,150	-		Psyr_0893	0.68	+0.5
1,014,168	-		Psyr_0893	0.71	-0.6
1,014,194	+		Psyr_0893	0.75	-0.9
1,014,194	+		Psyr_0893	0.75	+0.0
1,014,194	+		Psyr_0893	0.75	+0.3
1,014,194	+		Psyr_0893	0.75	-1.8
1,014,194	+		Psyr_0893	0.75	-0.9
1,014,194	+		Psyr_0893	0.75	+0.2
1,014,194	+		Psyr_0893	0.75	-0.3
1,014,194	+		Psyr_0893	0.75	-0.6
1,014,195	-		Psyr_0893	0.76	-0.5
1,014,195	-		Psyr_0893	0.76	+0.1
1,014,195	-		Psyr_0893	0.76	+1.5
1,014,195	-		Psyr_0893	0.76	-0.6
1,014,230	+		Psyr_0893	0.82	-1.6
1,014,230	+		Psyr_0893	0.82	-1.1
1,014,231	-		Psyr_0893	0.82	-0.9
1,014,231	-		Psyr_0893	0.82	-3.2
1,014,231	-		Psyr_0893	0.82	+0.5
1,014,267	-		Psyr_0893	0.88	+1.3
1,014,267	-		Psyr_0893	0.88	-0.7
1,014,494	+				-1.2
1,014,494	+				-2.3
1,014,494	+				-0.6
1,014,495	-				+2.2
1,014,495	-				-0.0
1,014,495	-				+0.8
1,014,532	+				-1.1
1,014,544	+				+0.5
1,014,604	+		Psyr_0894	0.20	-0.5
1,014,604	+		Psyr_0894	0.20	-1.2
1,014,605	-		Psyr_0894	0.20	-1.3
1,014,605	-		Psyr_0894	0.20	+0.3
1,014,605	-		Psyr_0894	0.20	-0.2
1,014,638	+		Psyr_0894	0.28	-1.8
1,014,690	+		Psyr_0894	0.41	-0.0
1,014,714	-		Psyr_0894	0.47	-0.4
1,014,794	+		Psyr_0894	0.67	-0.1
1,014,794	+		Psyr_0894	0.67	+0.3
1,014,795	-		Psyr_0894	0.67	-0.2
1,014,796	+		Psyr_0894	0.67	-0.3
1,014,796	+		Psyr_0894	0.67	-0.4
1,014,796	+		Psyr_0894	0.67	-0.8
1,014,796	+		Psyr_0894	0.67	-0.0
1,014,796	+		Psyr_0894	0.67	+0.7
1,014,797	-		Psyr_0894	0.68	-3.3
1,014,797	-		Psyr_0894	0.68	+0.1
1,014,797	-		Psyr_0894	0.68	-0.5
1,014,797	-		Psyr_0894	0.68	-1.2
1,014,797	-		Psyr_0894	0.68	-0.5
1,014,825	+		Psyr_0894	0.75	-0.7
1,014,825	+		Psyr_0894	0.75	-1.3
1,014,826	-		Psyr_0894	0.75	-0.6
1,014,826	-		Psyr_0894	0.75	+1.2
1,014,826	-		Psyr_0894	0.75	-1.7
1,014,829	+		Psyr_0894	0.76	-1.8
1,014,829	+		Psyr_0894	0.76	-0.4
1,014,829	+		Psyr_0894	0.76	-0.8
1,014,829	+		Psyr_0894	0.76	-1.7
1,014,829	+		Psyr_0894	0.76	-0.7
1,014,829	+		Psyr_0894	0.76	-1.9
1,014,829	+		Psyr_0894	0.76	-1.3
1,014,829	+		Psyr_0894	0.76	+0.2
1,014,829	+		Psyr_0894	0.76	+1.5
1,014,829	+		Psyr_0894	0.76	+0.2
1,014,829	+		Psyr_0894	0.76	-0.1
1,014,830	-		Psyr_0894	0.76	-1.6
1,014,830	-		Psyr_0894	0.76	-0.7
1,014,830	-		Psyr_0894	0.76	+1.5
1,014,830	-		Psyr_0894	0.76	+0.4
1,014,830	-		Psyr_0894	0.76	+1.2
1,014,830	-		Psyr_0894	0.76	+0.3
1,014,830	-		Psyr_0894	0.76	+1.3
1,014,830	-		Psyr_0894	0.76	+0.0
1,014,830	-		Psyr_0894	0.76	-1.8
1,014,830	-		Psyr_0894	0.76	-0.8
1,014,830	-		Psyr_0894	0.76	-0.4
1,014,830	-		Psyr_0894	0.76	+1.3
1,014,883	+		Psyr_0894	0.89	+0.3
1,014,884	-		Psyr_0894	0.89	-0.9
1,014,884	-		Psyr_0894	0.89	+1.0
1,014,884	-		Psyr_0894	0.89	+0.7
1,014,884	-		Psyr_0894	0.89	-0.2
1,014,885	+		Psyr_0894	0.89	+1.1
1,014,885	+		Psyr_0894	0.89	+1.7
1,014,885	+		Psyr_0894	0.89	-2.6
1,014,886	-		Psyr_0894	0.90	-0.4
1,014,886	-		Psyr_0894	0.90	-0.0
1,014,886	-		Psyr_0894	0.90	+1.1
1,014,886	-		Psyr_0894	0.90	-0.1
1,014,888	+				-1.0
1,014,917	+				+0.7
1,014,917	+				-0.8
1,014,917	+				-0.4
1,014,917	+				-0.6
1,014,917	+				-1.7
1,014,917	+				+0.6
1,014,917	+				+0.4
1,014,917	+				+0.1
1,014,918	-				-1.5
1,014,918	-				-0.1
1,014,918	-				+3.0
1,014,918	-				+0.6
1,014,918	-				+0.5
1,014,918	-				-0.8
1,014,918	-				+3.1
1,014,918	-				+1.5
1,015,037	+		Psyr_0895	0.48	-1.3
1,015,037	+		Psyr_0895	0.48	-0.5
1,015,037	+		Psyr_0895	0.48	-1.0
1,015,038	-		Psyr_0895	0.48	-0.0
1,015,038	-		Psyr_0895	0.48	+0.1
1,015,038	-		Psyr_0895	0.48	+1.4
1,015,038	-		Psyr_0895	0.48	+0.7
1,015,059	+		Psyr_0895	0.57	+0.1
1,015,059	+		Psyr_0895	0.57	-1.0
1,015,060	-		Psyr_0895	0.58	-0.9
1,015,061	+		Psyr_0895	0.58	-0.3
1,015,061	+		Psyr_0895	0.58	-0.4
1,015,062	-		Psyr_0895	0.58	+0.2
1,015,062	-		Psyr_0895	0.58	+0.3
1,015,062	-		Psyr_0895	0.58	+0.7
1,015,062	-		Psyr_0895	0.58	-1.2
1,015,062	-		Psyr_0895	0.58	+0.7
1,015,062	-		Psyr_0895	0.58	+0.9
1,015,192	+				-0.1
1,015,192	+				-0.2
1,015,193	-				-0.3
1,015,193	-				+0.7
1,015,198	+				-1.2
1,015,198	+				-0.0
1,015,198	+				+0.1
1,015,198	+				-0.8
1,015,244	-				+1.1
1,015,270	+				+2.1
1,015,270	+				+1.4
1,015,270	+				-1.1
1,015,270	+				-0.2
1,015,270	+				+0.4
1,015,270	+				-0.6
1,015,270	+				-0.4
1,015,270	+				+1.6
1,015,270	+				+1.7
1,015,270	+				-0.4
1,015,270	+				-0.6
1,015,270	+				+0.7
1,015,270	+				-0.2
1,015,270	+				+1.3
1,015,270	+				-1.4
1,015,270	+				+2.7
1,015,270	+				-2.1
1,015,271	-				+0.6
1,015,271	-				-0.5
1,015,271	-				-0.7
1,015,271	-				-0.2
1,015,271	-				+0.7
1,015,271	-				-0.5
1,015,271	-				+0.2
1,015,271	-				+0.1
1,015,271	-				-1.2
1,015,271	-				-1.2
1,015,298	+				-0.1