Experiment: KB with Harmol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0835 and Psyr_0836 are separated by 348 nucleotides Psyr_0836 and Psyr_0837 overlap by 1 nucleotides Psyr_0837 and Psyr_0838 are separated by 30 nucleotides
Psyr_0835: Psyr_0835 - transcriptional regulator, TraR/DksA family, at 947,408 to 947,848
_0835
Psyr_0836: Psyr_0836 - Aminotransferase, class I and II, at 948,197 to 949,369
_0836
Psyr_0837: Psyr_0837 - Sugar fermentation stimulation protein, at 949,369 to 950,082
_0837
Psyr_0838: Psyr_0838 - Rieske [2Fe-2S] region, at 950,113 to 950,511
_0838
Position (kb) 948
949
950 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 947.238 kb on + strand at 947.345 kb on + strand at 947.345 kb on + strand at 947.346 kb on - strand at 947.346 kb on - strand at 947.346 kb on - strand at 947.413 kb on + strand at 947.414 kb on - strand at 947.507 kb on + strand, within Psyr_0835 at 947.532 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.687 kb on + strand, within Psyr_0835 at 947.688 kb on - strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.796 kb on + strand, within Psyr_0835 at 947.796 kb on + strand, within Psyr_0835 at 947.816 kb on + strand at 947.816 kb on + strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.872 kb on + strand at 947.872 kb on + strand at 947.873 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.939 kb on + strand at 947.939 kb on + strand at 947.939 kb on + strand at 947.940 kb on - strand at 947.940 kb on - strand at 947.962 kb on + strand at 947.999 kb on - strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.044 kb on - strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.074 kb on - strand at 948.170 kb on + strand at 948.192 kb on + strand at 948.193 kb on - strand at 948.193 kb on - strand at 948.209 kb on + strand at 948.210 kb on - strand at 948.210 kb on - strand at 948.210 kb on - strand at 948.231 kb on + strand at 948.232 kb on - strand at 948.232 kb on - strand at 948.232 kb on - strand at 948.348 kb on + strand, within Psyr_0836 at 948.349 kb on - strand, within Psyr_0836 at 948.349 kb on - strand, within Psyr_0836 at 948.440 kb on + strand, within Psyr_0836 at 948.440 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.604 kb on - strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.830 kb on + strand, within Psyr_0836 at 948.830 kb on + strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.899 kb on + strand, within Psyr_0836 at 948.900 kb on - strand, within Psyr_0836 at 948.986 kb on + strand, within Psyr_0836 at 948.987 kb on - strand, within Psyr_0836 at 949.157 kb on + strand, within Psyr_0836 at 949.157 kb on + strand, within Psyr_0836 at 949.157 kb on + strand, within Psyr_0836 at 949.157 kb on + strand, within Psyr_0836 at 949.158 kb on - strand, within Psyr_0836 at 949.158 kb on - strand, within Psyr_0836 at 949.158 kb on - strand, within Psyr_0836 at 949.158 kb on - strand, within Psyr_0836 at 949.158 kb on - strand, within Psyr_0836 at 949.158 kb on - strand, within Psyr_0836 at 949.163 kb on + strand, within Psyr_0836 at 949.163 kb on + strand, within Psyr_0836 at 949.163 kb on + strand, within Psyr_0836 at 949.164 kb on - strand, within Psyr_0836 at 949.240 kb on + strand, within Psyr_0836 at 949.296 kb on - strand at 949.354 kb on + strand at 949.355 kb on - strand at 949.415 kb on - strand at 949.605 kb on + strand, within Psyr_0837 at 949.606 kb on - strand, within Psyr_0837 at 949.626 kb on + strand, within Psyr_0837 at 949.626 kb on + strand, within Psyr_0837 at 949.762 kb on + strand, within Psyr_0837 at 949.762 kb on + strand, within Psyr_0837 at 949.763 kb on - strand, within Psyr_0837 at 949.763 kb on - strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 950.094 kb on - strand at 950.333 kb on + strand, within Psyr_0838
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmol 10 mM remove 947,238 + -1.0 947,345 + +2.5 947,345 + -0.9 947,346 - +0.1 947,346 - +0.3 947,346 - +1.2 947,413 + +0.2 947,414 - -0.9 947,507 + Psyr_0835 0.22 -2.6 947,532 + Psyr_0835 0.28 -1.0 947,680 + Psyr_0835 0.62 -3.6 947,680 + Psyr_0835 0.62 -1.7 947,680 + Psyr_0835 0.62 -0.9 947,680 + Psyr_0835 0.62 -0.1 947,680 + Psyr_0835 0.62 -1.1 947,681 - Psyr_0835 0.62 -2.0 947,681 - Psyr_0835 0.62 -2.0 947,681 - Psyr_0835 0.62 -2.3 947,681 - Psyr_0835 0.62 -1.1 947,687 + Psyr_0835 0.63 -3.2 947,688 - Psyr_0835 0.63 -3.4 947,772 + Psyr_0835 0.83 -3.1 947,772 + Psyr_0835 0.83 -1.3 947,772 + Psyr_0835 0.83 -3.8 947,772 + Psyr_0835 0.83 -2.6 947,772 + Psyr_0835 0.83 -3.4 947,772 + Psyr_0835 0.83 -2.8 947,772 + Psyr_0835 0.83 -0.4 947,772 + Psyr_0835 0.83 -2.1 947,772 + Psyr_0835 0.83 +0.2 947,772 + Psyr_0835 0.83 -0.4 947,772 + Psyr_0835 0.83 -2.0 947,773 - Psyr_0835 0.83 -0.9 947,773 - Psyr_0835 0.83 -3.9 947,773 - Psyr_0835 0.83 -2.5 947,773 - Psyr_0835 0.83 +1.0 947,796 + Psyr_0835 0.88 -2.6 947,796 + Psyr_0835 0.88 -0.4 947,816 + +0.7 947,816 + -2.3 947,817 - -1.3 947,817 - -0.7 947,817 - -0.7 947,872 + +2.0 947,872 + -2.1 947,873 - -2.3 947,878 - -1.0 947,878 - +0.1 947,878 - +0.3 947,878 - +0.2 947,939 + -1.7 947,939 + -3.0 947,939 + +1.4 947,940 - -0.3 947,940 - -1.3 947,962 + -1.1 947,999 - +0.3 948,032 + -0.4 948,032 + -0.6 948,032 + +0.1 948,032 + +0.2 948,032 + -0.9 948,033 - -0.5 948,033 - -0.5 948,033 - +1.3 948,033 - +0.0 948,044 - -1.1 948,062 + +0.5 948,062 + +0.4 948,062 + +0.1 948,062 + +0.9 948,062 + -1.5 948,074 - -1.1 948,170 + +0.2 948,192 + -0.2 948,193 - -0.9 948,193 - -0.2 948,209 + -0.8 948,210 - -0.3 948,210 - -1.8 948,210 - -1.2 948,231 + -0.6 948,232 - -0.8 948,232 - +0.9 948,232 - +0.0 948,348 + Psyr_0836 0.13 +1.2 948,349 - Psyr_0836 0.13 +2.2 948,349 - Psyr_0836 0.13 -0.3 948,440 + Psyr_0836 0.21 +0.4 948,440 + Psyr_0836 0.21 -0.9 948,603 + Psyr_0836 0.35 +0.9 948,603 + Psyr_0836 0.35 +0.2 948,603 + Psyr_0836 0.35 +3.2 948,603 + Psyr_0836 0.35 +0.8 948,604 - Psyr_0836 0.35 +1.6 948,815 + Psyr_0836 0.53 -0.8 948,815 + Psyr_0836 0.53 +0.2 948,815 + Psyr_0836 0.53 +0.2 948,816 - Psyr_0836 0.53 +0.0 948,816 - Psyr_0836 0.53 +0.3 948,816 - Psyr_0836 0.53 -1.3 948,830 + Psyr_0836 0.54 +1.0 948,830 + Psyr_0836 0.54 -0.0 948,831 - Psyr_0836 0.54 -0.5 948,831 - Psyr_0836 0.54 -0.9 948,831 - Psyr_0836 0.54 +2.8 948,831 - Psyr_0836 0.54 -0.7 948,899 + Psyr_0836 0.60 +0.1 948,900 - Psyr_0836 0.60 +0.2 948,986 + Psyr_0836 0.67 -1.6 948,987 - Psyr_0836 0.67 +1.7 949,157 + Psyr_0836 0.82 -0.2 949,157 + Psyr_0836 0.82 -1.1 949,157 + Psyr_0836 0.82 +0.8 949,157 + Psyr_0836 0.82 +1.1 949,158 - Psyr_0836 0.82 +0.1 949,158 - Psyr_0836 0.82 +0.1 949,158 - Psyr_0836 0.82 -0.9 949,158 - Psyr_0836 0.82 +0.6 949,158 - Psyr_0836 0.82 -1.5 949,158 - Psyr_0836 0.82 +0.5 949,163 + Psyr_0836 0.82 -1.0 949,163 + Psyr_0836 0.82 -3.4 949,163 + Psyr_0836 0.82 +1.2 949,164 - Psyr_0836 0.82 +0.9 949,240 + Psyr_0836 0.89 -1.4 949,296 - -0.0 949,354 + +1.7 949,355 - +2.0 949,415 - +0.6 949,605 + Psyr_0837 0.33 +0.5 949,606 - Psyr_0837 0.33 -1.1 949,626 + Psyr_0837 0.36 -1.1 949,626 + Psyr_0837 0.36 -0.7 949,762 + Psyr_0837 0.55 -1.8 949,762 + Psyr_0837 0.55 +0.3 949,763 - Psyr_0837 0.55 -1.1 949,763 - Psyr_0837 0.55 +0.9 949,903 + Psyr_0837 0.75 +0.6 949,903 + Psyr_0837 0.75 -0.9 949,903 + Psyr_0837 0.75 -2.5 949,904 - Psyr_0837 0.75 +1.6 949,904 - Psyr_0837 0.75 -2.3 949,904 - Psyr_0837 0.75 -3.6 949,904 - Psyr_0837 0.75 -0.3 949,904 - Psyr_0837 0.75 -0.3 949,904 - Psyr_0837 0.75 +0.9 950,094 - +2.4 950,333 + Psyr_0838 0.55 -2.4
Or see this region's nucleotide sequence