Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15525

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
3,473,967	+		PFLU_RS15520	0.20	-0.7
3,473,968	-		PFLU_RS15520	0.20	+1.3
3,473,968	-		PFLU_RS15520	0.20	+0.7
3,473,968	-		PFLU_RS15520	0.20	-0.0
3,474,017	+		PFLU_RS15520	0.25	-0.3
3,474,018	+		PFLU_RS15520	0.25	+0.0
3,474,018	-		PFLU_RS15520	0.25	-1.0
3,474,018	-		PFLU_RS15520	0.25	-1.2
3,474,018	-		PFLU_RS15520	0.25	+0.1
3,474,099	-		PFLU_RS15520	0.33	+0.2
3,474,120	+		PFLU_RS15520	0.35	-1.6
3,474,120	+		PFLU_RS15520	0.35	-0.4
3,474,153	+		PFLU_RS15520	0.38	-0.8
3,474,153	+		PFLU_RS15520	0.38	-0.1
3,474,153	+		PFLU_RS15520	0.38	+0.8
3,474,154	-		PFLU_RS15520	0.38	+0.9
3,474,154	-		PFLU_RS15520	0.38	+0.2
3,474,154	-		PFLU_RS15520	0.38	-1.0
3,474,154	-		PFLU_RS15520	0.38	-0.1
3,474,245	+		PFLU_RS15520	0.47	+1.1
3,474,245	+		PFLU_RS15520	0.47	-0.3
3,474,246	-		PFLU_RS15520	0.47	+0.2
3,474,296	+		PFLU_RS15520	0.52	-0.9
3,474,296	+		PFLU_RS15520	0.52	-1.0
3,474,296	+		PFLU_RS15520	0.52	+1.6
3,474,296	+		PFLU_RS15520	0.52	+1.4
3,474,296	+		PFLU_RS15520	0.52	-0.1
3,474,296	+		PFLU_RS15520	0.52	-0.6
3,474,296	+		PFLU_RS15520	0.52	-0.5
3,474,296	+		PFLU_RS15520	0.52	+0.1
3,474,297	-		PFLU_RS15520	0.52	-0.2
3,474,297	-		PFLU_RS15520	0.52	-0.8
3,474,297	-		PFLU_RS15520	0.52	+0.6
3,474,297	-		PFLU_RS15520	0.52	+0.4
3,474,297	-		PFLU_RS15520	0.52	-0.4
3,474,365	+		PFLU_RS15520	0.58	+0.1
3,474,373	+		PFLU_RS15520	0.59	-1.9
3,474,373	+		PFLU_RS15520	0.59	+2.5
3,474,373	+		PFLU_RS15520	0.59	+1.8
3,474,580	-		PFLU_RS15520	0.79	-0.4
3,474,671	+		PFLU_RS15520	0.88	-0.0
3,474,671	+		PFLU_RS15520	0.88	-0.8
3,474,671	+		PFLU_RS15520	0.88	+1.5
3,474,672	-		PFLU_RS15520	0.88	+0.2
3,474,759	+				-1.5
3,474,760	-				-0.1
3,474,760	-				-0.1
3,474,800	+				-0.2
3,474,800	+				+1.1
3,474,800	+				-1.4
3,474,800	+				+0.5
3,474,800	+				-0.4
3,474,801	-				-0.6
3,474,804	+				-0.6
3,474,836	-				+0.2
3,474,880	+				-0.4
3,474,881	-				-0.2
3,474,968	-		PFLU_RS15525	0.15	-1.2
3,475,005	+		PFLU_RS15525	0.24	-1.1
3,475,005	+		PFLU_RS15525	0.24	-0.4
3,475,005	+		PFLU_RS15525	0.24	+2.6
3,475,005	+		PFLU_RS15525	0.24	+1.2
3,475,006	-		PFLU_RS15525	0.24	-0.1
3,475,006	-		PFLU_RS15525	0.24	+1.2
3,475,006	-		PFLU_RS15525	0.24	+0.8
3,475,006	-		PFLU_RS15525	0.24	+0.0
3,475,006	-		PFLU_RS15525	0.24	+1.7
3,475,006	-		PFLU_RS15525	0.24	-0.4
3,475,006	-		PFLU_RS15525	0.24	+1.3
3,475,006	-		PFLU_RS15525	0.24	+0.7
3,475,006	-		PFLU_RS15525	0.24	-0.1
3,475,089	+		PFLU_RS15525	0.46	+0.6
3,475,089	+		PFLU_RS15525	0.46	+0.5
3,475,089	+		PFLU_RS15525	0.46	-0.8
3,475,089	+		PFLU_RS15525	0.46	-2.2
3,475,089	+		PFLU_RS15525	0.46	-0.6
3,475,089	+		PFLU_RS15525	0.46	+2.0
3,475,089	+		PFLU_RS15525	0.46	-0.5
3,475,090	-		PFLU_RS15525	0.46	+0.2
3,475,090	-		PFLU_RS15525	0.46	-0.4
3,475,090	-		PFLU_RS15525	0.46	-0.1
3,475,090	-		PFLU_RS15525	0.46	+1.0
3,475,090	-		PFLU_RS15525	0.46	-0.8
3,475,090	-		PFLU_RS15525	0.46	+2.5
3,475,090	-		PFLU_RS15525	0.46	-0.1
3,475,090	-		PFLU_RS15525	0.46	+2.3
3,475,090	-		PFLU_RS15525	0.46	+0.4
3,475,090	-		PFLU_RS15525	0.46	-0.9
3,475,090	-		PFLU_RS15525	0.46	-0.3
3,475,114	+		PFLU_RS15525	0.52	+0.4
3,475,114	+		PFLU_RS15525	0.52	-1.0
3,475,114	+		PFLU_RS15525	0.52	-1.6
3,475,114	+		PFLU_RS15525	0.52	-0.5
3,475,114	+		PFLU_RS15525	0.52	+1.0
3,475,114	+		PFLU_RS15525	0.52	+0.7
3,475,115	-		PFLU_RS15525	0.52	+0.4
3,475,115	-		PFLU_RS15525	0.52	+1.0
3,475,115	-		PFLU_RS15525	0.52	+1.2
3,475,115	-		PFLU_RS15525	0.52	-0.2
3,475,115	-		PFLU_RS15525	0.52	+1.0
3,475,115	-		PFLU_RS15525	0.52	+0.6
3,475,115	-		PFLU_RS15525	0.52	+0.4
3,475,120	+		PFLU_RS15525	0.54	-1.5
3,475,164	-		PFLU_RS15525	0.65	+1.2
3,475,179	+		PFLU_RS15525	0.69	-1.7
3,475,179	+		PFLU_RS15525	0.69	-0.6
3,475,179	+		PFLU_RS15525	0.69	-0.7
3,475,180	-		PFLU_RS15525	0.69	+2.9
3,475,299	-				+1.5
3,475,299	-				-1.6
3,475,304	+				+0.2
3,475,304	+				+0.4
3,475,305	-				+0.0
3,475,305	-				-1.3
3,475,350	+				+0.8
3,475,350	+				+0.9
3,475,350	+				-1.0
3,475,350	+				-0.7
3,475,350	+				-0.9
3,475,351	-				+1.4
3,475,351	-				-0.4
3,475,351	-				-0.4
3,475,351	-				-0.2
3,475,351	-				-0.8
3,475,405	+				-0.6
3,475,432	+				+0.0
3,475,433	-				-0.9
3,475,541	-				+0.0
3,475,541	-				-0.0
3,475,541	-				+1.5
3,475,569	+				-1.1
3,475,569	+				+1.1
3,475,572	+				+0.7
3,475,572	+				+0.1
3,475,691	+		PFLU_RS15530	0.14	+1.5
3,475,692	-		PFLU_RS15530	0.14	-1.4
3,475,697	+		PFLU_RS15530	0.14	-0.9
3,475,697	+		PFLU_RS15530	0.14	-1.5
3,475,698	-		PFLU_RS15530	0.14	+0.5
3,475,710	+		PFLU_RS15530	0.15	-1.0
3,475,710	+		PFLU_RS15530	0.15	-1.4
3,475,710	+		PFLU_RS15530	0.15	-0.7
3,475,710	+		PFLU_RS15530	0.15	+0.3
3,475,710	+		PFLU_RS15530	0.15	+0.2
3,475,710	+		PFLU_RS15530	0.15	+0.9
3,475,711	-		PFLU_RS15530	0.15	+0.6
3,475,711	-		PFLU_RS15530	0.15	-0.7
3,475,711	-		PFLU_RS15530	0.15	-0.2
3,475,711	-		PFLU_RS15530	0.15	+0.6
3,475,711	-		PFLU_RS15530	0.15	+1.7
3,475,711	-		PFLU_RS15530	0.15	-0.8
3,475,711	-		PFLU_RS15530	0.15	+0.2
3,475,711	-		PFLU_RS15530	0.15	-1.4
3,475,718	-		PFLU_RS15530	0.15	-1.4
3,475,735	+		PFLU_RS15530	0.16	-0.7
3,475,735	+		PFLU_RS15530	0.16	-0.7
3,475,742	-		PFLU_RS15530	0.16	-0.8
3,475,742	-		PFLU_RS15530	0.16	-1.6
3,475,765	+		PFLU_RS15530	0.18	+1.5
3,475,765	+		PFLU_RS15530	0.18	+0.3
3,475,765	+		PFLU_RS15530	0.18	-0.4
3,475,765	+		PFLU_RS15530	0.18	-0.9
3,475,765	+		PFLU_RS15530	0.18	-1.6
3,475,766	-		PFLU_RS15530	0.18	+0.6
3,475,766	-		PFLU_RS15530	0.18	-1.0
3,475,766	-		PFLU_RS15530	0.18	-0.9
3,475,766	-		PFLU_RS15530	0.18	+0.6
3,475,846	+		PFLU_RS15530	0.22	-0.3
3,475,855	+		PFLU_RS15530	0.23	+0.7
3,475,856	-		PFLU_RS15530	0.23	-0.6
3,475,856	-		PFLU_RS15530	0.23	+0.4
3,475,861	+		PFLU_RS15530	0.23	+0.2
3,475,983	+		PFLU_RS15530	0.30	-0.8
3,475,983	+		PFLU_RS15530	0.30	-0.3
3,475,983	+		PFLU_RS15530	0.30	+2.0
3,475,983	+		PFLU_RS15530	0.30	-1.4
3,476,011	+		PFLU_RS15530	0.32	-1.0
3,476,012	-		PFLU_RS15530	0.32	-1.3
3,476,012	-		PFLU_RS15530	0.32	+0.1
3,476,059	+		PFLU_RS15530	0.35	+1.4
3,476,059	+		PFLU_RS15530	0.35	+0.3
3,476,080	+		PFLU_RS15530	0.36	-0.6
3,476,081	-		PFLU_RS15530	0.36	-1.2
3,476,081	-		PFLU_RS15530	0.36	+0.0
3,476,081	-		PFLU_RS15530	0.36	-0.7
3,476,081	-		PFLU_RS15530	0.36	-0.7
3,476,133	+		PFLU_RS15530	0.39	-0.6
3,476,191	-		PFLU_RS15530	0.42	-0.0
3,476,242	+		PFLU_RS15530	0.45	-1.4
3,476,242	+		PFLU_RS15530	0.45	-1.3
3,476,242	+		PFLU_RS15530	0.45	-1.4
3,476,242	+		PFLU_RS15530	0.45	-0.6
3,476,242	+		PFLU_RS15530	0.45	+1.6
3,476,242	+		PFLU_RS15530	0.45	+0.9
3,476,242	+		PFLU_RS15530	0.45	+0.1
3,476,242	+		PFLU_RS15530	0.45	-0.5
3,476,242	+		PFLU_RS15530	0.45	+1.0
3,476,242	+		PFLU_RS15530	0.45	-1.5
3,476,243	-		PFLU_RS15530	0.45	-0.6
3,476,243	-		PFLU_RS15530	0.45	-0.7
3,476,243	-		PFLU_RS15530	0.45	-0.2
3,476,243	-		PFLU_RS15530	0.45	-1.5
3,476,243	-		PFLU_RS15530	0.45	+1.7
3,476,243	-		PFLU_RS15530	0.45	+0.8
3,476,243	-		PFLU_RS15530	0.45	+1.0
3,476,243	-		PFLU_RS15530	0.45	-0.6
3,476,243	-		PFLU_RS15530	0.45	+1.5
3,476,243	-		PFLU_RS15530	0.45	+1.0
3,476,244	+		PFLU_RS15530	0.45	+1.5
3,476,244	+		PFLU_RS15530	0.45	-0.9
3,476,244	+		PFLU_RS15530	0.45	-0.3
3,476,244	+		PFLU_RS15530	0.45	-0.0
3,476,244	+		PFLU_RS15530	0.45	+0.0
3,476,244	+		PFLU_RS15530	0.45	+0.7
3,476,244	+		PFLU_RS15530	0.45	-1.9
3,476,245	-		PFLU_RS15530	0.46	+2.3
3,476,245	-		PFLU_RS15530	0.46	-1.4
3,476,245	-		PFLU_RS15530	0.46	-0.8