Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14190

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
3,173,805	+		PFLU_RS14185	0.61	-0.4
3,173,805	+		PFLU_RS14185	0.61	-0.6
3,173,805	+		PFLU_RS14185	0.61	-0.0
3,173,805	+		PFLU_RS14185	0.61	-2.3
3,173,805	+		PFLU_RS14185	0.61	+0.1
3,173,806	-		PFLU_RS14185	0.61	+1.5
3,173,806	-		PFLU_RS14185	0.61	-0.4
3,173,806	-		PFLU_RS14185	0.61	-0.3
3,173,806	-		PFLU_RS14185	0.61	-0.3
3,173,808	+		PFLU_RS14185	0.61	+1.4
3,173,808	+		PFLU_RS14185	0.61	+0.6
3,173,808	+		PFLU_RS14185	0.61	+0.2
3,173,808	+		PFLU_RS14185	0.61	+0.1
3,173,808	+		PFLU_RS14185	0.61	-0.6
3,174,051	+		PFLU_RS14185	0.71	+0.6
3,174,145	+		PFLU_RS14185	0.75	-2.0
3,174,171	+		PFLU_RS14185	0.76	-1.3
3,174,171	+		PFLU_RS14185	0.76	-0.0
3,174,171	+		PFLU_RS14185	0.76	+1.4
3,174,171	+		PFLU_RS14185	0.76	+1.5
3,174,171	+		PFLU_RS14185	0.76	-0.1
3,174,172	-		PFLU_RS14185	0.76	+0.4
3,174,172	-		PFLU_RS14185	0.76	-0.2
3,174,172	-		PFLU_RS14185	0.76	+0.5
3,174,175	+		PFLU_RS14185	0.76	+1.1
3,174,175	+		PFLU_RS14185	0.76	-0.6
3,174,175	+		PFLU_RS14185	0.76	+0.4
3,174,175	+		PFLU_RS14185	0.76	+0.2
3,174,175	+		PFLU_RS14185	0.76	-0.8
3,174,176	-		PFLU_RS14185	0.76	-1.5
3,174,176	-		PFLU_RS14185	0.76	-0.3
3,174,176	-		PFLU_RS14185	0.76	+0.7
3,174,176	-		PFLU_RS14185	0.76	+1.2
3,174,183	+		PFLU_RS14185	0.76	-0.2
3,174,183	+		PFLU_RS14185	0.76	+0.8
3,174,183	+		PFLU_RS14185	0.76	+1.4
3,174,183	+		PFLU_RS14185	0.76	+0.0
3,174,183	+		PFLU_RS14185	0.76	+0.9
3,174,183	+		PFLU_RS14185	0.76	-0.8
3,174,183	+		PFLU_RS14185	0.76	-1.1
3,174,183	+		PFLU_RS14185	0.76	-0.6
3,174,184	-		PFLU_RS14185	0.76	-0.4
3,174,184	-		PFLU_RS14185	0.76	-0.2
3,174,184	-		PFLU_RS14185	0.76	+0.3
3,174,184	-		PFLU_RS14185	0.76	-0.7
3,174,184	-		PFLU_RS14185	0.76	-0.5
3,174,184	-		PFLU_RS14185	0.76	-1.0
3,174,184	-		PFLU_RS14185	0.76	+1.2
3,174,184	-		PFLU_RS14185	0.76	-0.4
3,174,184	-		PFLU_RS14185	0.76	+0.5
3,174,184	-		PFLU_RS14185	0.76	-0.0
3,174,184	-		PFLU_RS14185	0.76	+0.1
3,174,187	+		PFLU_RS14185	0.76	-0.7
3,174,187	+		PFLU_RS14185	0.76	-0.7
3,174,187	+		PFLU_RS14185	0.76	-0.9
3,174,187	+		PFLU_RS14185	0.76	+2.1
3,174,188	-		PFLU_RS14185	0.77	+0.5
3,174,188	-		PFLU_RS14185	0.77	+0.0
3,174,188	-		PFLU_RS14185	0.77	-0.7
3,174,195	+		PFLU_RS14185	0.77	-0.0
3,174,195	+		PFLU_RS14185	0.77	-1.7
3,174,195	+		PFLU_RS14185	0.77	+1.4
3,174,195	+		PFLU_RS14185	0.77	-0.5
3,174,195	+		PFLU_RS14185	0.77	+1.9
3,174,195	+		PFLU_RS14185	0.77	-0.5
3,174,195	+		PFLU_RS14185	0.77	-1.1
3,174,195	+		PFLU_RS14185	0.77	+1.9
3,174,196	-		PFLU_RS14185	0.77	+0.7
3,174,196	-		PFLU_RS14185	0.77	-0.3
3,174,196	-		PFLU_RS14185	0.77	+0.6
3,174,196	-		PFLU_RS14185	0.77	-0.4
3,174,196	-		PFLU_RS14185	0.77	-1.5
3,174,196	-		PFLU_RS14185	0.77	-0.6
3,174,196	-		PFLU_RS14185	0.77	-0.6
3,174,196	-		PFLU_RS14185	0.77	-1.5
3,174,196	-		PFLU_RS14185	0.77	+0.2
3,174,196	-		PFLU_RS14185	0.77	-0.2
3,174,200	-		PFLU_RS14185	0.77	+0.6
3,174,211	+		PFLU_RS14185	0.77	-1.3
3,174,212	-		PFLU_RS14185	0.77	-1.9
3,174,212	-		PFLU_RS14185	0.77	+1.4
3,174,264	+		PFLU_RS14185	0.80	-0.5
3,174,264	+		PFLU_RS14185	0.80	-1.2
3,174,264	+		PFLU_RS14185	0.80	-2.0
3,174,265	-		PFLU_RS14185	0.80	+0.7
3,174,414	+		PFLU_RS14185	0.85	-0.2
3,174,415	-		PFLU_RS14185	0.86	+1.9
3,174,421	+		PFLU_RS14185	0.86	+0.8
3,174,499	+		PFLU_RS14185	0.89	-1.5
3,174,499	+		PFLU_RS14185	0.89	-0.5
3,174,499	+		PFLU_RS14185	0.89	-0.8
3,174,499	+		PFLU_RS14185	0.89	-0.8
3,174,499	+		PFLU_RS14185	0.89	+1.6
3,174,499	+		PFLU_RS14185	0.89	-1.0
3,174,500	-		PFLU_RS14185	0.89	+0.1
3,174,519	+		PFLU_RS14185	0.90	+0.5
3,174,519	+		PFLU_RS14185	0.90	-0.0
3,174,519	+		PFLU_RS14185	0.90	-0.4
3,174,519	+		PFLU_RS14185	0.90	-0.2
3,174,519	+		PFLU_RS14185	0.90	+0.8
3,174,519	+		PFLU_RS14185	0.90	-2.0
3,174,520	-		PFLU_RS14185	0.90	+1.8
3,174,520	-		PFLU_RS14185	0.90	-1.2
3,174,520	-		PFLU_RS14185	0.90	-1.6
3,174,520	-		PFLU_RS14185	0.90	+0.4
3,174,520	-		PFLU_RS14185	0.90	+0.2
3,174,520	-		PFLU_RS14185	0.90	+1.5
3,174,636	+				-1.6
3,174,636	+				+0.9
3,174,636	+				-1.4
3,174,637	-				-0.5
3,174,637	-				-1.3
3,174,637	-				+0.5
3,174,637	-				+1.0
3,174,637	-				+0.9
3,174,748	+				+0.7
3,174,748	+				-1.0
3,174,749	-				-1.4
3,174,756	+				-1.3
3,174,757	-				-0.4
3,174,757	-				-1.1
3,174,757	-				-1.3
3,174,757	-				+0.5
3,174,757	-				-0.3
3,174,757	-				-0.6
3,174,985	-		PFLU_RS14190	0.24	+2.4
3,175,019	+		PFLU_RS14190	0.28	-0.6
3,175,019	+		PFLU_RS14190	0.28	+0.4
3,175,020	-		PFLU_RS14190	0.29	-0.5
3,175,020	-		PFLU_RS14190	0.29	-1.4
3,175,020	-		PFLU_RS14190	0.29	-0.5
3,175,055	+		PFLU_RS14190	0.33	-1.3
3,175,056	-		PFLU_RS14190	0.33	+0.6
3,175,239	-		PFLU_RS14190	0.55	-0.7
3,175,248	+		PFLU_RS14190	0.56	+0.5
3,175,249	-		PFLU_RS14190	0.56	-1.1
3,175,249	-		PFLU_RS14190	0.56	+0.1
3,175,284	+		PFLU_RS14190	0.60	-0.5
3,175,284	+		PFLU_RS14190	0.60	-0.3
3,175,284	+		PFLU_RS14190	0.60	-0.5
3,175,284	+		PFLU_RS14190	0.60	-0.8
3,175,285	-		PFLU_RS14190	0.60	-2.2
3,175,325	+		PFLU_RS14190	0.65	-0.0
3,175,325	+		PFLU_RS14190	0.65	+0.1
3,175,401	+		PFLU_RS14190	0.74	-1.9
3,175,401	+		PFLU_RS14190	0.74	+0.7
3,175,401	+		PFLU_RS14190	0.74	-0.4
3,175,402	-		PFLU_RS14190	0.74	-0.6
3,175,402	-		PFLU_RS14190	0.74	-1.1
3,175,402	-		PFLU_RS14190	0.74	-0.2
3,175,456	+		PFLU_RS14190	0.81	-1.9
3,175,483	-		PFLU_RS14190	0.84	-0.9
3,175,568	-				-0.4
3,175,615	+				-0.4
3,175,615	+				+1.1
3,175,615	+				-1.8
3,175,615	+				+1.2
3,175,615	+				+1.0
3,175,615	+				+1.0
3,175,615	+				+0.9
3,175,615	+				-1.6
3,175,615	+				-0.8
3,175,616	-				-0.7
3,175,616	-				+2.0
3,175,616	-				-0.9
3,175,616	-				-1.5
3,175,616	-				-1.4
3,175,616	-				-1.9
3,175,616	-				+0.8
3,175,616	-				+0.9
3,175,629	+				+0.1
3,175,629	+				-0.3
3,175,629	+				-0.9
3,175,629	+				-1.7
3,175,629	+				+1.0
3,175,629	+				-1.1
3,175,629	+				-0.7
3,175,629	+				+1.2
3,175,630	-				-1.0
3,175,630	-				-0.7
3,175,633	+				-0.8
3,175,633	+				-0.7
3,175,633	+				-1.7
3,175,633	+				+1.9
3,175,633	+				-2.4
3,175,633	+				+1.5
3,175,633	+				+1.6
3,175,633	+				-0.3
3,175,634	-				-0.5
3,175,634	-				-0.3
3,175,634	-				-0.6
3,175,665	-				+0.0
3,175,705	+				+0.8
3,175,706	-				-1.4
3,175,706	-				+1.5
3,175,706	-				+0.2
3,175,722	+				+0.9
3,175,722	+				+0.5
3,175,723	-				+0.9
3,175,723	-				+0.1
3,175,723	-				-0.8
3,175,723	-				+0.6
3,175,726	+				-0.3
3,175,726	+				+0.9
3,175,726	+				-1.2
3,175,727	-				-2.0
3,175,727	-				-1.4
3,175,727	-				+1.0
3,175,747	-				+1.5
3,175,747	-				+0.8
3,175,752	+				+0.0
3,175,753	-				-0.4
3,175,774	-				-0.1
3,175,774	-				+0.3
3,175,805	-				+0.7
3,175,810	+				+0.3
3,175,927	+		PFLU_RS14195	0.41	+0.6
3,175,927	+		PFLU_RS14195	0.41	+0.2
3,175,928	-		PFLU_RS14195	0.41	-0.6
3,175,928	-		PFLU_RS14195	0.41	+1.0
3,175,928	-		PFLU_RS14195	0.41	+1.3
3,176,087	+				-0.7
3,176,087	+				-1.3
3,176,087	+				-0.3
3,176,087	+				+0.8
3,176,087	+				+0.4
3,176,087	+				+2.3
3,176,087	+				-0.2
3,176,087	+				+0.5
3,176,087	+				-0.0
3,176,087	+				+0.6
3,176,087	+				-0.5
3,176,087	+				+1.4
3,176,087	+				-0.0
3,176,087	+				+1.0
3,176,087	+				+1.2
3,176,087	+				+0.5
3,176,087	+				-0.2
3,176,087	+				+0.2
3,176,087	+				-1.6
3,176,087	+				+0.2
3,176,087	+				-0.0
3,176,087	+				+0.3
3,176,088	-				-0.2
3,176,088	-				-0.9
3,176,088	-				+0.2
3,176,088	-				+0.2
3,176,088	-				+0.6
3,176,088	-				+0.2
3,176,088	-				-0.2
3,176,088	-				-0.6
3,176,088	-				+2.6
3,176,088	-				-1.3
3,176,088	-				-0.8
3,176,125	+				-1.4
3,176,125	+				+0.4
3,176,125	+				-0.7
3,176,125	+				+0.4
3,176,125	+				-1.3
3,176,126	-				-0.1
3,176,126	-				+3.4
3,176,126	-				-2.8
3,176,126	-				+0.5
3,176,126	-				-1.2
3,176,126	-				+1.0
3,176,126	-				+0.5
3,176,134	-				-1.7
3,176,148	+				-1.6
3,176,148	+				-1.2
3,176,149	-				-0.4
3,176,149	-				-1.9
3,176,391	+		PFLU_RS14200	0.23	-0.9
3,176,391	+		PFLU_RS14200	0.23	+0.5
3,176,391	+		PFLU_RS14200	0.23	+0.1
3,176,391	+		PFLU_RS14200	0.23	-1.6
3,176,391	+		PFLU_RS14200	0.23	-1.3
3,176,391	+		PFLU_RS14200	0.23	+0.3
3,176,391	+		PFLU_RS14200	0.23	+0.9
3,176,392	-		PFLU_RS14200	0.23	+0.0
3,176,392	-		PFLU_RS14200	0.23	-1.7
3,176,392	-		PFLU_RS14200	0.23	+0.7
3,176,392	-		PFLU_RS14200	0.23	-1.2
3,176,462	+		PFLU_RS14200	0.29	-1.3
3,176,462	+		PFLU_RS14200	0.29	+0.8
3,176,462	+		PFLU_RS14200	0.29	-0.9
3,176,462	+		PFLU_RS14200	0.29	-0.7
3,176,462	+		PFLU_RS14200	0.29	-0.7
3,176,463	-		PFLU_RS14200	0.29	+1.0
3,176,463	-		PFLU_RS14200	0.29	+0.8
3,176,463	-		PFLU_RS14200	0.29	-1.4
3,176,463	-		PFLU_RS14200	0.29	-1.0