Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08555

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
1,908,304	+		PFLU_RS08550	0.78	-1.6
1,908,304	+		PFLU_RS08550	0.78	+0.2
1,908,334	+		PFLU_RS08550	0.79	-0.2
1,908,334	+		PFLU_RS08550	0.79	+1.0
1,908,334	+		PFLU_RS08550	0.79	-1.4
1,908,335	-		PFLU_RS08550	0.79	-0.9
1,908,335	-		PFLU_RS08550	0.79	-0.6
1,908,381	+		PFLU_RS08550	0.80	-0.6
1,908,381	+		PFLU_RS08550	0.80	-0.3
1,908,381	+		PFLU_RS08550	0.80	+1.0
1,908,382	-		PFLU_RS08550	0.80	+0.0
1,908,382	-		PFLU_RS08550	0.80	+1.4
1,908,426	+		PFLU_RS08550	0.81	-0.9
1,908,426	+		PFLU_RS08550	0.81	+0.9
1,908,434	-		PFLU_RS08550	0.82	-1.2
1,908,434	-		PFLU_RS08550	0.82	-1.2
1,908,444	+		PFLU_RS08550	0.82	+1.8
1,908,444	+		PFLU_RS08550	0.82	-0.6
1,908,444	+		PFLU_RS08550	0.82	-0.2
1,908,444	+		PFLU_RS08550	0.82	-0.4
1,908,444	+		PFLU_RS08550	0.82	+0.2
1,908,444	+		PFLU_RS08550	0.82	-0.3
1,908,444	+		PFLU_RS08550	0.82	-0.7
1,908,444	+		PFLU_RS08550	0.82	-0.7
1,908,444	+		PFLU_RS08550	0.82	+2.4
1,908,444	+		PFLU_RS08550	0.82	-1.2
1,908,444	+		PFLU_RS08550	0.82	+0.1
1,908,444	+		PFLU_RS08550	0.82	+2.0
1,908,444	+		PFLU_RS08550	0.82	-0.2
1,908,444	+		PFLU_RS08550	0.82	-0.8
1,908,444	+		PFLU_RS08550	0.82	-1.4
1,908,444	+		PFLU_RS08550	0.82	-0.2
1,908,444	+		PFLU_RS08550	0.82	+1.1
1,908,444	+		PFLU_RS08550	0.82	+1.1
1,908,444	+		PFLU_RS08550	0.82	+0.3
1,908,444	+		PFLU_RS08550	0.82	-0.3
1,908,444	+		PFLU_RS08550	0.82	-1.0
1,908,444	+		PFLU_RS08550	0.82	+0.1
1,908,444	+		PFLU_RS08550	0.82	-1.0
1,908,445	-		PFLU_RS08550	0.82	-0.1
1,908,445	-		PFLU_RS08550	0.82	-0.6
1,908,445	-		PFLU_RS08550	0.82	-0.0
1,908,445	-		PFLU_RS08550	0.82	+0.7
1,908,445	-		PFLU_RS08550	0.82	-0.5
1,908,445	-		PFLU_RS08550	0.82	+1.0
1,908,445	-		PFLU_RS08550	0.82	-1.7
1,908,445	-		PFLU_RS08550	0.82	+0.7
1,908,445	-		PFLU_RS08550	0.82	-1.1
1,908,445	-		PFLU_RS08550	0.82	-1.0
1,908,445	-		PFLU_RS08550	0.82	+0.7
1,908,445	-		PFLU_RS08550	0.82	+0.8
1,908,445	-		PFLU_RS08550	0.82	-1.6
1,908,445	-		PFLU_RS08550	0.82	-0.1
1,908,445	-		PFLU_RS08550	0.82	+1.0
1,908,445	-		PFLU_RS08550	0.82	-1.7
1,908,445	-		PFLU_RS08550	0.82	-0.3
1,908,473	+		PFLU_RS08550	0.83	+0.4
1,908,473	+		PFLU_RS08550	0.83	-1.2
1,908,473	+		PFLU_RS08550	0.83	-2.0
1,908,473	+		PFLU_RS08550	0.83	+0.9
1,908,474	-		PFLU_RS08550	0.83	+0.7
1,908,474	-		PFLU_RS08550	0.83	+1.0
1,908,474	-		PFLU_RS08550	0.83	-0.8
1,908,474	-		PFLU_RS08550	0.83	-1.4
1,908,474	-		PFLU_RS08550	0.83	-0.4
1,908,474	-		PFLU_RS08550	0.83	-0.4
1,908,474	-		PFLU_RS08550	0.83	-0.7
1,908,516	+		PFLU_RS08550	0.84	-3.0
1,908,517	-		PFLU_RS08550	0.84	+1.0
1,908,560	+		PFLU_RS08550	0.85	-0.4
1,908,560	+		PFLU_RS08550	0.85	-0.1
1,908,561	-		PFLU_RS08550	0.85	-0.5
1,908,561	-		PFLU_RS08550	0.85	+1.1
1,908,561	-		PFLU_RS08550	0.85	+0.2
1,908,579	+		PFLU_RS08550	0.86	-0.7
1,908,580	-		PFLU_RS08550	0.86	-0.0
1,908,580	-		PFLU_RS08550	0.86	+0.2
1,908,580	-		PFLU_RS08550	0.86	-0.1
1,908,585	+		PFLU_RS08550	0.86	-0.4
1,908,585	+		PFLU_RS08550	0.86	-2.5
1,908,585	+		PFLU_RS08550	0.86	-0.9
1,908,585	+		PFLU_RS08550	0.86	-0.0
1,908,585	+		PFLU_RS08550	0.86	-1.1
1,908,586	-		PFLU_RS08550	0.86	+1.5
1,908,586	-		PFLU_RS08550	0.86	-0.1
1,908,586	-		PFLU_RS08550	0.86	-0.7
1,908,586	-		PFLU_RS08550	0.86	-1.1
1,908,586	-		PFLU_RS08550	0.86	-0.4
1,908,586	-		PFLU_RS08550	0.86	+1.5
1,908,586	-		PFLU_RS08550	0.86	+0.8
1,908,675	+		PFLU_RS08550	0.88	+0.4
1,908,675	+		PFLU_RS08550	0.88	+0.1
1,908,675	+		PFLU_RS08550	0.88	+0.1
1,908,675	+		PFLU_RS08550	0.88	-0.1
1,908,675	+		PFLU_RS08550	0.88	-0.8
1,908,676	-		PFLU_RS08550	0.88	-0.3
1,908,676	-		PFLU_RS08550	0.88	+0.2
1,908,676	-		PFLU_RS08550	0.88	+2.6
1,908,734	+		PFLU_RS08550	0.90	-1.1
1,908,734	+		PFLU_RS08550	0.90	+0.1
1,908,734	+		PFLU_RS08550	0.90	-0.2
1,908,734	+		PFLU_RS08550	0.90	-0.9
1,908,735	-		PFLU_RS08550	0.90	+0.7
1,908,794	+				+1.4
1,908,794	+				-0.6
1,908,794	+				-0.5
1,908,794	+				-0.3
1,908,794	+				-0.2
1,908,794	+				-1.1
1,908,795	-				-1.8
1,908,795	-				-0.2
1,908,795	-				-2.0
1,908,838	-				-1.4
1,908,858	+				+1.8
1,908,858	+				+0.1
1,908,858	+				+2.1
1,908,859	-				+1.0
1,908,859	-				+0.3
1,908,859	-				+2.1
1,908,859	-				-0.8
1,908,859	-				-0.9
1,908,859	-				+0.6
1,908,877	+				-1.5
1,908,877	+				-1.3
1,908,877	+				+0.1
1,908,877	+				+0.2
1,908,877	+				-0.0
1,908,877	+				-0.5
1,908,877	+				+1.2
1,908,877	+				-2.3
1,908,878	-				-1.1
1,908,878	-				+0.5
1,908,878	-				+0.9
1,908,878	-				-1.1
1,908,878	-				+0.1
1,908,878	-				-1.4
1,908,878	-				+0.6
1,908,894	+				-0.7
1,908,895	-				+1.9
1,909,075	+				+0.1
1,909,075	+				+1.0
1,909,075	+				-0.1
1,909,075	+				-0.6
1,909,075	+				-1.0
1,909,076	-				+0.1
1,909,083	+				-0.9
1,909,083	+				+0.4
1,909,083	+				+0.2
1,909,083	+				+0.0
1,909,084	-				+0.1
1,909,092	-				+1.4
1,909,094	-				+0.5
1,909,094	-				+3.7
1,909,121	-				+0.0
1,909,146	+				-0.1
1,909,204	+		PFLU_RS08555	0.14	-1.5
1,909,277	-		PFLU_RS08555	0.26	+0.7
1,909,277	-		PFLU_RS08555	0.26	+0.2
1,909,340	-		PFLU_RS08555	0.36	-1.3
1,909,340	-		PFLU_RS08555	0.36	-1.1
1,909,341	+		PFLU_RS08555	0.36	+0.2
1,909,373	+		PFLU_RS08555	0.41	-0.0
1,909,373	+		PFLU_RS08555	0.41	-0.2
1,909,373	+		PFLU_RS08555	0.41	+0.2
1,909,373	+		PFLU_RS08555	0.41	-0.1
1,909,374	-		PFLU_RS08555	0.41	+0.8
1,909,374	-		PFLU_RS08555	0.41	-1.5
1,909,374	-		PFLU_RS08555	0.41	-0.3
1,909,377	+		PFLU_RS08555	0.42	-0.8
1,909,377	+		PFLU_RS08555	0.42	-1.8
1,909,377	+		PFLU_RS08555	0.42	-0.5
1,909,377	+		PFLU_RS08555	0.42	-1.1
1,909,377	+		PFLU_RS08555	0.42	-1.6
1,909,377	+		PFLU_RS08555	0.42	-0.0
1,909,377	+		PFLU_RS08555	0.42	-1.6
1,909,378	-		PFLU_RS08555	0.42	+0.9
1,909,378	-		PFLU_RS08555	0.42	-2.7
1,909,378	-		PFLU_RS08555	0.42	-0.8
1,909,378	-		PFLU_RS08555	0.42	-0.8
1,909,379	+		PFLU_RS08555	0.42	-1.1
1,909,379	+		PFLU_RS08555	0.42	-1.0
1,909,380	-		PFLU_RS08555	0.42	+1.1
1,909,442	+		PFLU_RS08555	0.52	+0.7
1,909,442	+		PFLU_RS08555	0.52	+0.7
1,909,442	+		PFLU_RS08555	0.52	+1.5
1,909,442	+		PFLU_RS08555	0.52	-1.1
1,909,442	+		PFLU_RS08555	0.52	+0.5
1,909,443	-		PFLU_RS08555	0.52	+0.8
1,909,443	-		PFLU_RS08555	0.52	-0.6
1,909,524	+		PFLU_RS08555	0.65	-1.1
1,909,524	+		PFLU_RS08555	0.65	-0.1
1,909,524	+		PFLU_RS08555	0.65	-0.5
1,909,524	+		PFLU_RS08555	0.65	-1.2
1,909,524	+		PFLU_RS08555	0.65	-1.3
1,909,524	+		PFLU_RS08555	0.65	-1.0
1,909,524	+		PFLU_RS08555	0.65	-0.3
1,909,524	+		PFLU_RS08555	0.65	-0.6
1,909,525	-		PFLU_RS08555	0.66	-0.7
1,909,525	-		PFLU_RS08555	0.66	+0.0
1,909,525	-		PFLU_RS08555	0.66	+2.3
1,909,525	-		PFLU_RS08555	0.66	-1.5
1,909,525	-		PFLU_RS08555	0.66	-0.7
1,909,525	-		PFLU_RS08555	0.66	-0.1
1,909,525	-		PFLU_RS08555	0.66	-1.2
1,909,525	-		PFLU_RS08555	0.66	+0.9
1,909,525	-		PFLU_RS08555	0.66	-0.1
1,909,575	+		PFLU_RS08555	0.74	-0.7
1,909,575	+		PFLU_RS08555	0.74	-0.3
1,909,575	+		PFLU_RS08555	0.74	+0.7
1,909,575	+		PFLU_RS08555	0.74	-2.0
1,909,590	+		PFLU_RS08555	0.76	-1.3
1,909,664	+		PFLU_RS08555	0.88	+0.2
1,909,665	-		PFLU_RS08555	0.88	+1.5
1,909,665	-		PFLU_RS08555	0.88	+0.5
1,909,702	+				+0.3
1,909,702	+				+1.4
1,909,746	+				-1.7
1,909,747	-				-1.9
1,909,779	+				-1.3
1,909,780	-				+0.7
1,909,780	-				-0.1
1,909,824	+				-0.2
1,909,849	-				-0.9
1,909,861	+				-0.6
1,909,861	+				+0.2
1,909,861	+				-1.1
1,909,862	-				+0.4
1,909,862	-				+0.0
1,909,865	+				-0.3
1,909,866	-				+0.9
1,909,866	-				+0.9
1,909,875	+				-1.1
1,909,921	+				-0.8
1,909,921	+				-0.4
1,909,955	-				-1.5
1,909,962	+				-1.3
1,909,963	-				+0.9
1,909,963	-				+0.4
1,909,984	+				+0.0
1,909,992	+				+0.4
1,910,057	+		PFLU_RS08560	0.16	-1.2
1,910,057	+		PFLU_RS08560	0.16	+0.3
1,910,061	+		PFLU_RS08560	0.17	-1.4
1,910,061	+		PFLU_RS08560	0.17	-0.3
1,910,062	-		PFLU_RS08560	0.18	-1.3
1,910,111	+		PFLU_RS08560	0.30	+0.5
1,910,111	+		PFLU_RS08560	0.30	-0.7
1,910,111	+		PFLU_RS08560	0.30	+1.0
1,910,112	-		PFLU_RS08560	0.30	-0.5
1,910,112	-		PFLU_RS08560	0.30	+1.3
1,910,112	-		PFLU_RS08560	0.30	-1.1
1,910,117	+		PFLU_RS08560	0.31	+0.2
1,910,117	+		PFLU_RS08560	0.31	-0.9
1,910,117	+		PFLU_RS08560	0.31	-0.9
1,910,118	-		PFLU_RS08560	0.32	-1.0
1,910,118	-		PFLU_RS08560	0.32	+1.0
1,910,155	+		PFLU_RS08560	0.41	-0.4
1,910,156	-		PFLU_RS08560	0.41	-0.2
1,910,156	-		PFLU_RS08560	0.41	+0.2
1,910,156	-		PFLU_RS08560	0.41	-1.3
1,910,382	+				-0.4
1,910,383	-				+1.2
1,910,436	-				-1.0
1,910,474	+				+1.1
1,910,475	-				-1.1
1,910,524	+				+0.8
1,910,524	+				-0.5
1,910,524	+				+0.2
1,910,524	+				-1.5
1,910,524	+				-0.6
1,910,524	+				+1.9
1,910,524	+				-0.8
1,910,525	-				+1.1
1,910,525	-				+0.6
1,910,525	-				+0.1
1,910,525	-				+3.3
1,910,525	-				+0.5
1,910,525	-				+0.4
1,910,525	-				-0.9
1,910,528	+				+0.5
1,910,528	+				-0.7
1,910,528	+				+1.0
1,910,528	+				-1.5
1,910,528	+				-0.1
1,910,528	+				-1.0
1,910,528	+				-1.2
1,910,528	+				-0.4
1,910,529	-				-0.4
1,910,529	-				+0.1
1,910,529	-				-0.0
1,910,616	+				+0.9
1,910,616	+				+0.5
1,910,616	+				-2.0
1,910,616	+				+0.2
1,910,616	+				-1.0
1,910,616	+				+0.4
1,910,616	+				-1.6
1,910,616	+				-0.4
1,910,616	+				-1.1
1,910,616	+				+2.2
1,910,616	+				-0.9
1,910,616	+				-0.1
1,910,616	+				+0.3
1,910,616	+				+0.8
1,910,616	+				+0.5
1,910,616	+				-1.0
1,910,616	+				-0.4
1,910,616	+				+0.5
1,910,616	+				+0.6
1,910,616	+				+0.5
1,910,616	+				-0.0
1,910,616	+				+0.2
1,910,616	+				-1.0
1,910,616	+				-1.6
1,910,616	+				-0.9
1,910,616	+				-0.1
1,910,616	+				-1.2
1,910,617	-				+0.2
1,910,617	-				-2.1
1,910,617	-				+0.9
1,910,617	-				-1.9
1,910,617	-				-0.5
1,910,617	-				+1.7
1,910,617	-				-0.9
1,910,617	-				-1.7
1,910,617	-				+0.6
1,910,617	-				+2.7
1,910,617	-				-1.1
1,910,617	-				+0.2
1,910,617	-				+0.0
1,910,617	-				-0.1
1,910,617	-				-0.5
1,910,617	-				+0.5
1,910,617	-				-0.3
1,910,617	-				+1.0
1,910,617	-				-0.6
1,910,617	-				-0.1
1,910,705	+		PFLU_RS08565	0.10	+0.9
1,910,705	+		PFLU_RS08565	0.10	+0.4
1,910,705	+		PFLU_RS08565	0.10	-0.3
1,910,706	-		PFLU_RS08565	0.10	-0.8
1,910,706	-		PFLU_RS08565	0.10	-0.0
1,910,706	-		PFLU_RS08565	0.10	+0.2
1,910,706	-		PFLU_RS08565	0.10	-1.1
1,910,706	-		PFLU_RS08565	0.10	-0.3