Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05000

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
1,116,926	+		PFLU_RS04995	0.39	+0.2
1,116,926	+		PFLU_RS04995	0.39	-1.7
1,116,926	+		PFLU_RS04995	0.39	-0.1
1,116,926	+		PFLU_RS04995	0.39	-0.2
1,116,926	+		PFLU_RS04995	0.39	+0.6
1,116,927	-		PFLU_RS04995	0.39	-0.5
1,116,927	-		PFLU_RS04995	0.39	-1.2
1,116,927	-		PFLU_RS04995	0.39	-0.6
1,116,927	-		PFLU_RS04995	0.39	+0.9
1,117,103	+		PFLU_RS04995	0.53	+0.1
1,117,154	+		PFLU_RS04995	0.57	+1.0
1,117,154	+		PFLU_RS04995	0.57	+0.4
1,117,154	+		PFLU_RS04995	0.57	+0.0
1,117,154	+		PFLU_RS04995	0.57	-0.3
1,117,154	+		PFLU_RS04995	0.57	-0.1
1,117,154	+		PFLU_RS04995	0.57	-0.7
1,117,154	+		PFLU_RS04995	0.57	-0.6
1,117,154	+		PFLU_RS04995	0.57	-0.1
1,117,154	+		PFLU_RS04995	0.57	-0.6
1,117,154	+		PFLU_RS04995	0.57	-1.0
1,117,154	+		PFLU_RS04995	0.57	+0.3
1,117,154	+		PFLU_RS04995	0.57	+0.8
1,117,154	+		PFLU_RS04995	0.57	+0.5
1,117,154	+		PFLU_RS04995	0.57	-2.5
1,117,154	+		PFLU_RS04995	0.57	-1.0
1,117,154	+		PFLU_RS04995	0.57	-0.3
1,117,154	+		PFLU_RS04995	0.57	+0.7
1,117,154	+		PFLU_RS04995	0.57	-1.7
1,117,154	+		PFLU_RS04995	0.57	-0.7
1,117,154	+		PFLU_RS04995	0.57	-2.2
1,117,155	-		PFLU_RS04995	0.57	-0.2
1,117,155	-		PFLU_RS04995	0.57	-0.6
1,117,155	-		PFLU_RS04995	0.57	+0.2
1,117,155	-		PFLU_RS04995	0.57	-0.3
1,117,155	-		PFLU_RS04995	0.57	+0.9
1,117,155	-		PFLU_RS04995	0.57	+1.2
1,117,155	-		PFLU_RS04995	0.57	-1.2
1,117,155	-		PFLU_RS04995	0.57	-0.1
1,117,155	-		PFLU_RS04995	0.57	+0.0
1,117,155	-		PFLU_RS04995	0.57	-1.1
1,117,155	-		PFLU_RS04995	0.57	+4.0
1,117,155	-		PFLU_RS04995	0.57	+1.6
1,117,155	-		PFLU_RS04995	0.57	+0.1
1,117,155	-		PFLU_RS04995	0.57	+1.4
1,117,155	-		PFLU_RS04995	0.57	-0.5
1,117,155	-		PFLU_RS04995	0.57	+0.4
1,117,155	-		PFLU_RS04995	0.57	+0.0
1,117,181	+		PFLU_RS04995	0.59	+1.3
1,117,181	+		PFLU_RS04995	0.59	-2.5
1,117,181	+		PFLU_RS04995	0.59	+0.8
1,117,181	+		PFLU_RS04995	0.59	+0.1
1,117,181	+		PFLU_RS04995	0.59	+0.1
1,117,181	+		PFLU_RS04995	0.59	-1.2
1,117,181	+		PFLU_RS04995	0.59	-0.2
1,117,181	+		PFLU_RS04995	0.59	+0.3
1,117,181	+		PFLU_RS04995	0.59	-0.1
1,117,182	-		PFLU_RS04995	0.59	-2.2
1,117,182	-		PFLU_RS04995	0.59	+0.6
1,117,182	-		PFLU_RS04995	0.59	+0.8
1,117,182	-		PFLU_RS04995	0.59	-1.8
1,117,182	-		PFLU_RS04995	0.59	-1.7
1,117,182	-		PFLU_RS04995	0.59	-0.9
1,117,182	-		PFLU_RS04995	0.59	-0.3
1,117,385	+		PFLU_RS04995	0.75	-0.3
1,117,385	+		PFLU_RS04995	0.75	-1.0
1,117,385	+		PFLU_RS04995	0.75	-1.7
1,117,385	+		PFLU_RS04995	0.75	-0.5
1,117,385	+		PFLU_RS04995	0.75	+0.6
1,117,385	+		PFLU_RS04995	0.75	-0.2
1,117,385	+		PFLU_RS04995	0.75	+1.7
1,117,385	+		PFLU_RS04995	0.75	-0.4
1,117,385	+		PFLU_RS04995	0.75	-0.4
1,117,385	+		PFLU_RS04995	0.75	-1.0
1,117,385	+		PFLU_RS04995	0.75	-1.2
1,117,385	+		PFLU_RS04995	0.75	+0.3
1,117,385	+		PFLU_RS04995	0.75	+0.1
1,117,385	+		PFLU_RS04995	0.75	-0.5
1,117,386	-		PFLU_RS04995	0.75	-1.0
1,117,386	-		PFLU_RS04995	0.75	-0.6
1,117,386	-		PFLU_RS04995	0.75	+0.1
1,117,386	-		PFLU_RS04995	0.75	-2.5
1,117,386	-		PFLU_RS04995	0.75	-0.3
1,117,386	-		PFLU_RS04995	0.75	+0.5
1,117,386	-		PFLU_RS04995	0.75	-0.7
1,117,386	-		PFLU_RS04995	0.75	-2.6
1,117,386	-		PFLU_RS04995	0.75	+2.8
1,117,386	-		PFLU_RS04995	0.75	-0.6
1,117,386	-		PFLU_RS04995	0.75	+0.9
1,117,386	-		PFLU_RS04995	0.75	-2.1
1,117,386	-		PFLU_RS04995	0.75	-1.6
1,117,386	-		PFLU_RS04995	0.75	+0.0
1,117,386	-		PFLU_RS04995	0.75	+0.0
1,117,386	-		PFLU_RS04995	0.75	+0.4
1,117,536	-		PFLU_RS04995	0.87	-1.0
1,117,536	-		PFLU_RS04995	0.87	+0.8
1,117,673	+				+0.6
1,117,673	+				+0.1
1,117,673	+				-1.0
1,117,673	+				+0.2
1,117,673	+				+1.0
1,117,673	+				-0.2
1,117,673	+				-0.4
1,117,673	+				-1.1
1,117,673	+				-0.7
1,117,673	+				-0.2
1,117,673	+				+0.6
1,117,673	+				+0.1
1,117,673	+				+0.3
1,117,673	+				+0.4
1,117,673	+				+0.2
1,117,673	+				-0.2
1,117,673	+				+0.6
1,117,673	+				-0.0
1,117,673	+				+2.4
1,117,673	+				+1.1
1,117,673	+				+2.5
1,117,673	+				-0.9
1,117,674	-				+0.1
1,117,674	-				+0.1
1,117,674	-				-1.6
1,117,674	-				-0.1
1,117,674	-				+1.5
1,117,674	-				-0.8
1,117,674	-				+0.2
1,117,674	-				-0.2
1,117,674	-				+2.0
1,117,674	-				+1.2
1,117,674	-				-0.3
1,117,674	-				-0.4
1,117,674	-				+0.1
1,117,674	-				+0.4
1,117,674	-				-0.5
1,117,674	-				-0.6
1,117,674	-				+0.2
1,117,674	-				-0.3
1,117,674	-				+2.2
1,117,674	-				+0.0
1,117,698	+				-1.5
1,117,698	+				-1.4
1,117,698	+				+0.1
1,117,698	+				+0.9
1,117,698	+				-2.4
1,117,698	+				-0.9
1,117,698	+				+0.0
1,117,698	+				-1.9
1,117,698	+				-0.8
1,117,699	-				+0.9
1,117,699	-				-2.3
1,117,699	-				-0.5
1,117,699	-				-1.8
1,117,699	-				+0.8
1,117,699	-				-0.4
1,117,699	-				-1.5
1,117,699	-				-1.1
1,117,699	-				+0.0
1,117,699	-				-0.6
1,117,699	-				-0.5
1,117,700	+				-0.3
1,117,700	+				+0.4
1,117,700	+				+2.0
1,117,700	+				+0.2
1,117,700	+				+0.5
1,117,700	+				+0.9
1,117,700	+				-2.1
1,117,700	+				-1.7
1,117,700	+				-0.8
1,117,700	+				-0.1
1,117,700	+				-0.7
1,117,700	+				-0.5
1,117,701	-				+1.1
1,117,701	-				-1.0
1,117,701	-				-0.7
1,117,701	-				-0.4
1,117,701	-				-1.1
1,117,701	-				+1.1
1,117,701	-				-2.0
1,117,701	-				-0.2
1,117,701	-				+2.6
1,117,701	-				-0.0
1,117,701	-				+1.4
1,117,701	-				-1.2
1,117,704	+				+0.3
1,117,704	+				+0.4
1,117,704	+				-1.6
1,117,704	+				+1.0
1,117,704	+				-0.5
1,117,704	+				+1.4
1,117,704	+				-0.9
1,117,704	+				-1.3
1,117,704	+				+0.4
1,117,704	+				-0.7
1,117,704	+				-0.3
1,117,704	+				+0.4
1,117,704	+				+0.4
1,117,704	+				+1.0
1,117,704	+				-0.9
1,117,704	+				-0.3
1,117,704	+				-0.4
1,117,704	+				-0.1
1,117,704	+				+1.4
1,117,704	+				-2.8
1,117,704	+				+0.2
1,117,704	+				-0.5
1,117,704	+				-0.6
1,117,704	+				+0.6
1,117,705	-				-0.2
1,117,705	-				-0.1
1,117,705	-				-0.3
1,117,705	-				-0.2
1,117,705	-				+0.1
1,117,705	-				-0.5
1,117,705	-				-0.3
1,117,705	-				-0.8
1,117,705	-				-0.1
1,117,705	-				+0.7
1,117,705	-				-2.0
1,117,705	-				+0.7
1,117,705	-				+0.1
1,117,705	-				+0.5
1,117,739	+				+0.3
1,117,739	+				-0.2
1,117,739	+				+0.9
1,117,740	-				-0.0
1,117,740	-				+1.4
1,117,740	-				-0.3
1,117,740	-				+0.2
1,117,740	-				-0.0
1,117,863	+		PFLU_RS05000	0.26	+1.1
1,117,895	-		PFLU_RS05000	0.31	+1.5
1,117,941	+		PFLU_RS05000	0.38	-0.5
1,117,941	+		PFLU_RS05000	0.38	-0.8
1,117,941	+		PFLU_RS05000	0.38	+0.9
1,117,941	+		PFLU_RS05000	0.38	-0.2
1,117,941	+		PFLU_RS05000	0.38	+0.7
1,117,941	+		PFLU_RS05000	0.38	-2.2
1,117,941	+		PFLU_RS05000	0.38	+0.0
1,117,941	+		PFLU_RS05000	0.38	+2.3
1,117,941	+		PFLU_RS05000	0.38	+0.9
1,117,942	-		PFLU_RS05000	0.38	-0.2
1,117,942	-		PFLU_RS05000	0.38	-0.2
1,117,942	-		PFLU_RS05000	0.38	+0.3
1,117,942	-		PFLU_RS05000	0.38	-0.5
1,117,942	-		PFLU_RS05000	0.38	+2.3
1,117,942	-		PFLU_RS05000	0.38	-0.6
1,117,942	-		PFLU_RS05000	0.38	-0.6
1,117,942	-		PFLU_RS05000	0.38	-0.2
1,117,942	-		PFLU_RS05000	0.38	+0.6
1,117,942	-		PFLU_RS05000	0.38	+1.1
1,117,942	-		PFLU_RS05000	0.38	-1.7
1,117,942	-		PFLU_RS05000	0.38	+0.6
1,117,942	-		PFLU_RS05000	0.38	+1.2
1,117,995	+		PFLU_RS05000	0.47	+1.5
1,117,995	+		PFLU_RS05000	0.47	+0.0
1,117,995	+		PFLU_RS05000	0.47	+0.3
1,117,996	-		PFLU_RS05000	0.47	-1.4
1,117,996	-		PFLU_RS05000	0.47	+0.2
1,117,996	-		PFLU_RS05000	0.47	+2.4
1,117,996	-		PFLU_RS05000	0.47	+0.4
1,118,041	-		PFLU_RS05000	0.54	+1.5
1,118,041	-		PFLU_RS05000	0.54	-1.7
1,118,065	+		PFLU_RS05000	0.58	-1.6
1,118,065	+		PFLU_RS05000	0.58	-0.7
1,118,065	+		PFLU_RS05000	0.58	+1.9
1,118,066	-		PFLU_RS05000	0.58	-1.4
1,118,066	-		PFLU_RS05000	0.58	+0.3
1,118,066	-		PFLU_RS05000	0.58	+1.7
1,118,066	-		PFLU_RS05000	0.58	-0.6
1,118,066	-		PFLU_RS05000	0.58	-1.5
1,118,066	-		PFLU_RS05000	0.58	+0.3
1,118,187	-		PFLU_RS05000	0.77	-0.7
1,118,187	-		PFLU_RS05000	0.77	-1.2
1,118,187	-		PFLU_RS05000	0.77	+0.6
1,118,196	+		PFLU_RS05000	0.78	-0.2
1,118,196	+		PFLU_RS05000	0.78	+0.2
1,118,196	+		PFLU_RS05000	0.78	-0.1
1,118,197	-		PFLU_RS05000	0.78	+0.3
1,118,349	+				+1.0
1,118,349	+				-0.1
1,118,349	+				+2.4
1,118,350	-				+0.0
1,118,350	-				+0.2
1,118,350	-				+0.4
1,118,361	+				-0.1
1,118,362	-				+1.2
1,118,362	-				+2.4
1,118,367	+				-0.1
1,118,367	+				+0.7
1,118,367	+				+0.8
1,118,367	+				+1.8
1,118,367	+				+0.3
1,118,367	+				-0.2
1,118,367	+				-0.7
1,118,367	+				+1.2
1,118,367	+				-0.5
1,118,367	+				+0.2
1,118,367	+				-1.5
1,118,367	+				-0.7
1,118,367	+				+0.3
1,118,367	+				-0.2
1,118,367	+				+0.1
1,118,368	-				-0.2
1,118,368	-				-0.4
1,118,368	-				-1.5
1,118,368	-				-1.2
1,118,368	-				-1.4
1,118,368	-				-0.9
1,118,368	-				-1.2
1,118,368	-				-0.7
1,118,368	-				+0.3
1,118,368	-				-0.9
1,118,526	+		PFLU_RS05005	0.14	-0.3
1,118,526	+		PFLU_RS05005	0.14	-2.0
1,118,526	+		PFLU_RS05005	0.14	-0.5
1,118,526	+		PFLU_RS05005	0.14	+0.6
1,118,527	-		PFLU_RS05005	0.15	-0.6
1,118,527	-		PFLU_RS05005	0.15	+0.3
1,118,605	-		PFLU_RS05005	0.21	+0.1
1,118,658	+		PFLU_RS05005	0.26	-1.5
1,118,658	+		PFLU_RS05005	0.26	+0.5
1,118,658	+		PFLU_RS05005	0.26	+0.3
1,118,658	+		PFLU_RS05005	0.26	-2.0
1,118,658	+		PFLU_RS05005	0.26	+0.9
1,118,658	+		PFLU_RS05005	0.26	-1.0
1,118,658	+		PFLU_RS05005	0.26	-0.7
1,118,658	+		PFLU_RS05005	0.26	+0.7
1,118,658	+		PFLU_RS05005	0.26	-1.1
1,118,659	-		PFLU_RS05005	0.26	+0.3
1,118,659	-		PFLU_RS05005	0.26	+1.2
1,118,701	-		PFLU_RS05005	0.30	-1.2
1,118,701	-		PFLU_RS05005	0.30	-0.9
1,118,703	+		PFLU_RS05005	0.30	-1.4
1,118,703	+		PFLU_RS05005	0.30	-1.3
1,118,703	+		PFLU_RS05005	0.30	-0.6
1,118,703	+		PFLU_RS05005	0.30	-0.8
1,118,703	+		PFLU_RS05005	0.30	+0.6
1,118,704	-		PFLU_RS05005	0.30	-0.9
1,118,704	-		PFLU_RS05005	0.30	+0.9
1,118,704	-		PFLU_RS05005	0.30	-0.7
1,119,055	+		PFLU_RS05005	0.61	+0.0
1,119,055	+		PFLU_RS05005	0.61	-2.6
1,119,213	+		PFLU_RS05005	0.74	-0.6
1,119,213	+		PFLU_RS05005	0.74	-0.6
1,119,213	+		PFLU_RS05005	0.74	-1.7
1,119,213	+		PFLU_RS05005	0.74	+0.4
1,119,214	-		PFLU_RS05005	0.75	+0.2
1,119,214	-		PFLU_RS05005	0.75	+1.5
1,119,214	-		PFLU_RS05005	0.75	-0.6
1,119,267	+		PFLU_RS05005	0.79	+0.2
1,119,267	+		PFLU_RS05005	0.79	+1.0
1,119,267	+		PFLU_RS05005	0.79	+1.0
1,119,268	-		PFLU_RS05005	0.79	+0.2
1,119,268	-		PFLU_RS05005	0.79	-0.2
1,119,268	-		PFLU_RS05005	0.79	-0.3