Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4686 and Psyr_4687 are separated by 64 nucleotides Psyr_4687 and Psyr_4688 are separated by 90 nucleotides Psyr_4688 and Psyr_4689 are separated by 138 nucleotides
Psyr_4686: Psyr_4686 - 8-amino-7-oxononanoate synthase, at 5,553,587 to 5,554,777
_4686
Psyr_4687: Psyr_4687 - biotin synthase, at 5,554,842 to 5,555,900
_4687
Psyr_4688: Psyr_4688 - Phosphoribosyltransferase, at 5,555,991 to 5,556,725
_4688
Psyr_4689: Psyr_4689 - Helix-turn-helix, Fis-type:Molybdenum-binding protein, N-terminal:Molybdenum-pterin binding protein, at 5,556,864 to 5,557,628
_4689
Position (kb) 5554
5555
5556 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5553.987 kb on + strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.993 kb on + strand, within Psyr_4686 at 5553.993 kb on + strand, within Psyr_4686 at 5553.994 kb on - strand, within Psyr_4686 at 5554.458 kb on + strand, within Psyr_4686 at 5554.458 kb on + strand, within Psyr_4686 at 5554.458 kb on + strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686 at 5554.638 kb on + strand, within Psyr_4686 at 5554.638 kb on + strand, within Psyr_4686 at 5554.638 kb on + strand, within Psyr_4686 at 5554.639 kb on - strand, within Psyr_4686 at 5554.639 kb on - strand, within Psyr_4686 at 5554.639 kb on - strand, within Psyr_4686 at 5554.639 kb on - strand, within Psyr_4686 at 5554.861 kb on + strand at 5554.861 kb on + strand at 5554.861 kb on + strand at 5554.861 kb on + strand at 5554.862 kb on - strand at 5554.862 kb on - strand at 5554.862 kb on - strand at 5554.862 kb on - strand at 5555.026 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand at 5555.129 kb on + strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.374 kb on + strand, within Psyr_4687 at 5555.390 kb on + strand, within Psyr_4687 at 5555.390 kb on + strand, within Psyr_4687 at 5555.391 kb on - strand, within Psyr_4687 at 5555.434 kb on + strand, within Psyr_4687 at 5555.434 kb on + strand at 5555.434 kb on + strand, within Psyr_4687 at 5555.434 kb on + strand, within Psyr_4687 at 5555.434 kb on + strand, within Psyr_4687 at 5555.434 kb on + strand, within Psyr_4687 at 5555.434 kb on + strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.437 kb on + strand, within Psyr_4687 at 5555.438 kb on - strand, within Psyr_4687 at 5555.438 kb on - strand, within Psyr_4687 at 5555.548 kb on + strand, within Psyr_4687 at 5555.548 kb on + strand, within Psyr_4687 at 5555.549 kb on - strand, within Psyr_4687 at 5555.549 kb on - strand, within Psyr_4687 at 5555.549 kb on - strand, within Psyr_4687 at 5555.549 kb on - strand, within Psyr_4687 at 5555.686 kb on + strand, within Psyr_4687 at 5555.687 kb on - strand, within Psyr_4687 at 5555.707 kb on + strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.833 kb on - strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.980 kb on - strand at 5555.980 kb on - strand at 5556.025 kb on - strand at 5556.058 kb on + strand at 5556.058 kb on + strand at 5556.058 kb on + strand at 5556.058 kb on + strand at 5556.058 kb on + strand at 5556.058 kb on + strand at 5556.059 kb on - strand at 5556.059 kb on - strand at 5556.059 kb on - strand at 5556.234 kb on + strand, within Psyr_4688 at 5556.235 kb on - strand, within Psyr_4688 at 5556.276 kb on - strand, within Psyr_4688 at 5556.282 kb on - strand, within Psyr_4688 at 5556.325 kb on - strand, within Psyr_4688 at 5556.325 kb on - strand, within Psyr_4688 at 5556.415 kb on - strand, within Psyr_4688 at 5556.415 kb on - strand, within Psyr_4688 at 5556.656 kb on - strand at 5556.690 kb on + strand at 5556.690 kb on + strand at 5556.691 kb on - strand at 5556.691 kb on - strand at 5556.691 kb on - strand at 5556.691 kb on - strand at 5556.741 kb on + strand at 5556.741 kb on + strand at 5556.742 kb on - strand at 5556.744 kb on + strand at 5556.744 kb on + strand at 5556.744 kb on + strand at 5556.744 kb on + strand at 5556.744 kb on + strand at 5556.745 kb on - strand at 5556.745 kb on - strand at 5556.745 kb on - strand at 5556.745 kb on - strand at 5556.745 kb on - strand at 5556.829 kb on + strand at 5556.829 kb on + strand at 5556.880 kb on + strand at 5556.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,553,987 + Psyr_4686 0.34 -0.9 5,553,987 + Psyr_4686 0.34 -3.1 5,553,987 + Psyr_4686 0.34 -1.1 5,553,987 + Psyr_4686 0.34 -0.8 5,553,987 + Psyr_4686 0.34 -1.4 5,553,988 - Psyr_4686 0.34 -1.2 5,553,988 - Psyr_4686 0.34 -1.7 5,553,988 - Psyr_4686 0.34 -1.7 5,553,988 - Psyr_4686 0.34 -2.8 5,553,993 + Psyr_4686 0.34 -1.4 5,553,993 + Psyr_4686 0.34 -1.9 5,553,994 - Psyr_4686 0.34 -1.2 5,554,458 + Psyr_4686 0.73 -1.4 5,554,458 + Psyr_4686 0.73 -2.5 5,554,458 + Psyr_4686 0.73 -1.4 5,554,459 - Psyr_4686 0.73 -0.1 5,554,459 - Psyr_4686 0.73 -3.0 5,554,459 - Psyr_4686 0.73 -2.4 5,554,459 - Psyr_4686 0.73 -2.4 5,554,638 + Psyr_4686 0.88 -1.4 5,554,638 + Psyr_4686 0.88 -3.2 5,554,638 + Psyr_4686 0.88 +1.2 5,554,639 - Psyr_4686 0.88 -0.9 5,554,639 - Psyr_4686 0.88 -1.8 5,554,639 - Psyr_4686 0.88 -2.8 5,554,639 - Psyr_4686 0.88 -1.9 5,554,861 + -1.5 5,554,861 + -1.7 5,554,861 + -1.4 5,554,861 + -1.1 5,554,862 - -0.3 5,554,862 - -0.1 5,554,862 - -0.1 5,554,862 - +0.2 5,555,026 + Psyr_4687 0.17 -3.1 5,555,129 + Psyr_4687 0.27 -2.4 5,555,129 + Psyr_4687 0.27 -2.2 5,555,129 + -1.1 5,555,129 + Psyr_4687 0.27 -0.1 5,555,130 - Psyr_4687 0.27 -2.9 5,555,130 - Psyr_4687 0.27 -2.5 5,555,130 - Psyr_4687 0.27 -1.8 5,555,130 - Psyr_4687 0.27 -3.2 5,555,347 + Psyr_4687 0.48 -2.2 5,555,347 + Psyr_4687 0.48 -1.0 5,555,347 + Psyr_4687 0.48 -1.8 5,555,347 + Psyr_4687 0.48 -2.9 5,555,347 + Psyr_4687 0.48 -1.8 5,555,347 + Psyr_4687 0.48 -4.1 5,555,348 - Psyr_4687 0.48 -0.4 5,555,348 - Psyr_4687 0.48 -0.9 5,555,348 - Psyr_4687 0.48 -1.9 5,555,348 - Psyr_4687 0.48 -3.2 5,555,348 - Psyr_4687 0.48 +0.2 5,555,348 - Psyr_4687 0.48 -3.2 5,555,374 + Psyr_4687 0.50 -1.2 5,555,390 + Psyr_4687 0.52 -1.9 5,555,390 + Psyr_4687 0.52 -2.8 5,555,391 - Psyr_4687 0.52 -1.1 5,555,434 + Psyr_4687 0.56 -3.1 5,555,434 + -1.6 5,555,434 + Psyr_4687 0.56 -0.9 5,555,434 + Psyr_4687 0.56 -0.8 5,555,434 + Psyr_4687 0.56 -3.4 5,555,434 + Psyr_4687 0.56 -1.6 5,555,434 + Psyr_4687 0.56 -2.2 5,555,435 - Psyr_4687 0.56 -2.6 5,555,435 - Psyr_4687 0.56 -1.1 5,555,435 - Psyr_4687 0.56 -2.2 5,555,435 - Psyr_4687 0.56 -2.5 5,555,437 + Psyr_4687 0.56 -2.8 5,555,438 - Psyr_4687 0.56 -1.2 5,555,438 - Psyr_4687 0.56 -2.5 5,555,548 + Psyr_4687 0.67 -1.6 5,555,548 + Psyr_4687 0.67 -2.6 5,555,549 - Psyr_4687 0.67 -2.9 5,555,549 - Psyr_4687 0.67 -2.3 5,555,549 - Psyr_4687 0.67 -2.6 5,555,549 - Psyr_4687 0.67 -3.0 5,555,686 + Psyr_4687 0.80 -4.1 5,555,687 - Psyr_4687 0.80 -2.5 5,555,707 + Psyr_4687 0.82 -0.1 5,555,708 - Psyr_4687 0.82 -2.5 5,555,708 - Psyr_4687 0.82 -1.6 5,555,708 - Psyr_4687 0.82 -3.3 5,555,833 - -1.1 5,555,975 + -1.4 5,555,975 + -2.9 5,555,975 + -1.9 5,555,975 + -2.0 5,555,975 + -2.4 5,555,975 + -1.1 5,555,975 + -2.9 5,555,975 + -3.0 5,555,976 - +0.2 5,555,976 - -1.4 5,555,976 - -2.8 5,555,976 - -0.6 5,555,976 - -0.4 5,555,976 - -0.4 5,555,980 - +0.1 5,555,980 - +0.4 5,556,025 - +1.0 5,556,058 + -0.4 5,556,058 + +0.0 5,556,058 + -0.4 5,556,058 + -0.0 5,556,058 + -0.3 5,556,058 + -0.3 5,556,059 - +1.4 5,556,059 - -0.8 5,556,059 - +1.4 5,556,234 + Psyr_4688 0.33 +0.3 5,556,235 - Psyr_4688 0.33 +0.3 5,556,276 - Psyr_4688 0.39 -2.4 5,556,282 - Psyr_4688 0.40 +0.6 5,556,325 - Psyr_4688 0.45 +0.3 5,556,325 - Psyr_4688 0.45 +0.2 5,556,415 - Psyr_4688 0.58 -3.2 5,556,415 - Psyr_4688 0.58 -0.4 5,556,656 - +0.4 5,556,690 + -1.4 5,556,690 + +1.2 5,556,691 - -1.6 5,556,691 - +0.8 5,556,691 - -1.8 5,556,691 - +0.3 5,556,741 + +0.2 5,556,741 + +0.0 5,556,742 - +0.0 5,556,744 + +0.1 5,556,744 + -1.8 5,556,744 + -0.6 5,556,744 + +0.2 5,556,744 + +0.2 5,556,745 - -1.6 5,556,745 - +0.4 5,556,745 - -0.8 5,556,745 - -0.3 5,556,745 - +0.5 5,556,829 + -0.8 5,556,829 + +0.4 5,556,880 + +0.3 5,556,880 + -1.0
Or see this region's nucleotide sequence