Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4595 and Psyr_4596 are separated by 18 nucleotides Psyr_4596 and Psyr_4597 overlap by 4 nucleotides Psyr_4597 and Psyr_4598 are separated by 45 nucleotides Psyr_4598 and Psyr_4599 overlap by 20 nucleotides Psyr_4599 and Psyr_4600 are separated by 122 nucleotides
Psyr_4595: Psyr_4595 - Bacteriophage Mu tail sheath, at 5,455,327 to 5,456,823
_4595
Psyr_4596: Psyr_4596 - conserved hypothetical protein, at 5,456,842 to 5,457,030
_4596
Psyr_4597: Psyr_4597 - conserved hypothetical protein, at 5,457,027 to 5,457,617
_4597
Psyr_4598: Psyr_4598 - lipoprotein, putative, at 5,457,663 to 5,458,001
_4598
Psyr_4599: Psyr_4599 - conserved hypothetical protein, at 5,457,982 to 5,458,371
_4599
Psyr_4600: Psyr_4600 - Glycoside hydrolase, family 5, at 5,458,494 to 5,459,666
_4600
Position (kb) 5457
5458
5459 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5456.844 kb on - strand at 5456.886 kb on + strand, within Psyr_4596 at 5456.887 kb on - strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.010 kb on + strand, within Psyr_4596 at 5457.011 kb on - strand, within Psyr_4596 at 5457.160 kb on + strand, within Psyr_4597 at 5457.160 kb on + strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.161 kb on - strand, within Psyr_4597 at 5457.238 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.283 kb on + strand, within Psyr_4597 at 5457.493 kb on + strand, within Psyr_4597 at 5457.672 kb on + strand at 5457.833 kb on - strand, within Psyr_4598 at 5457.833 kb on - strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.863 kb on + strand, within Psyr_4598 at 5457.864 kb on - strand, within Psyr_4598 at 5457.864 kb on - strand, within Psyr_4598 at 5458.053 kb on + strand, within Psyr_4599 at 5458.338 kb on + strand at 5458.338 kb on + strand at 5458.338 kb on + strand at 5458.339 kb on - strand at 5458.339 kb on - strand at 5458.354 kb on + strand at 5458.355 kb on - strand at 5458.507 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.537 kb on + strand at 5458.538 kb on - strand at 5458.656 kb on - strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.748 kb on - strand, within Psyr_4600 at 5458.748 kb on - strand, within Psyr_4600 at 5458.809 kb on - strand, within Psyr_4600 at 5458.840 kb on + strand, within Psyr_4600
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,456,844 - +1.6 5,456,886 + Psyr_4596 0.23 -1.8 5,456,887 - Psyr_4596 0.24 +0.3 5,457,010 + Psyr_4596 0.89 +1.3 5,457,010 + Psyr_4596 0.89 +4.4 5,457,010 + Psyr_4596 0.89 +1.0 5,457,010 + Psyr_4596 0.89 -0.6 5,457,011 - Psyr_4596 0.89 +0.4 5,457,160 + Psyr_4597 0.23 -0.3 5,457,160 + Psyr_4597 0.23 -0.4 5,457,161 - Psyr_4597 0.23 -0.4 5,457,161 - Psyr_4597 0.23 -2.3 5,457,161 - Psyr_4597 0.23 +1.4 5,457,161 - Psyr_4597 0.23 -1.2 5,457,161 - Psyr_4597 0.23 +0.0 5,457,238 + Psyr_4597 0.36 +0.0 5,457,283 + Psyr_4597 0.43 -1.3 5,457,283 + Psyr_4597 0.43 -0.1 5,457,283 + Psyr_4597 0.43 -1.0 5,457,283 + Psyr_4597 0.43 -0.3 5,457,493 + Psyr_4597 0.79 +0.7 5,457,672 + -1.1 5,457,833 - Psyr_4598 0.50 -0.5 5,457,833 - Psyr_4598 0.50 +0.4 5,457,863 + Psyr_4598 0.59 -1.5 5,457,863 + Psyr_4598 0.59 -1.8 5,457,863 + Psyr_4598 0.59 -2.7 5,457,864 - Psyr_4598 0.59 +1.7 5,457,864 - Psyr_4598 0.59 -0.6 5,458,053 + Psyr_4599 0.18 -2.5 5,458,338 + -0.1 5,458,338 + -0.1 5,458,338 + +2.2 5,458,339 - +1.1 5,458,339 - +0.9 5,458,354 + +0.1 5,458,355 - -0.8 5,458,507 + +0.6 5,458,537 + -0.4 5,458,537 + -0.1 5,458,537 + +2.2 5,458,537 + -0.2 5,458,537 + -0.8 5,458,538 - +0.5 5,458,656 - Psyr_4600 0.14 -0.6 5,458,747 + Psyr_4600 0.22 +0.1 5,458,747 + Psyr_4600 0.22 +2.2 5,458,747 + Psyr_4600 0.22 -0.7 5,458,747 + Psyr_4600 0.22 +0.1 5,458,747 + Psyr_4600 0.22 -0.4 5,458,748 - Psyr_4600 0.22 +0.6 5,458,748 - Psyr_4600 0.22 -1.4 5,458,809 - Psyr_4600 0.27 -0.6 5,458,840 + Psyr_4600 0.29 +0.1
Or see this region's nucleotide sequence