Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4490 and Psyr_4491 are separated by 108 nucleotides Psyr_4491 and Psyr_4492 are separated by 33 nucleotides Psyr_4492 and Psyr_4493 are separated by 130 nucleotides
Psyr_4490: Psyr_4490 - transcriptional regulator, DeoR family, at 5,352,121 to 5,352,885
_4490
Psyr_4491: Psyr_4491 - Deoxyribose-phosphate aldolase, at 5,352,994 to 5,353,674
_4491
Psyr_4492: Psyr_4492 - hypothetical protein, at 5,353,708 to 5,353,956
_4492
Psyr_4493: Psyr_4493 - PAS:GGDEF, at 5,354,087 to 5,357,005
_4493
Position (kb) 5353
5354 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5352.722 kb on + strand, within Psyr_4490 at 5352.722 kb on + strand, within Psyr_4490 at 5352.723 kb on - strand, within Psyr_4490 at 5352.917 kb on + strand at 5352.923 kb on - strand at 5352.936 kb on - strand at 5352.949 kb on - strand at 5352.966 kb on + strand at 5352.967 kb on - strand at 5353.111 kb on + strand, within Psyr_4491 at 5353.111 kb on + strand, within Psyr_4491 at 5353.111 kb on + strand, within Psyr_4491 at 5353.112 kb on - strand, within Psyr_4491 at 5353.530 kb on - strand, within Psyr_4491 at 5353.656 kb on + strand at 5353.669 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.709 kb on + strand at 5353.710 kb on - strand at 5353.710 kb on - strand at 5353.710 kb on - strand at 5353.710 kb on - strand at 5353.885 kb on - strand, within Psyr_4492 at 5353.885 kb on - strand, within Psyr_4492 at 5354.007 kb on + strand at 5354.007 kb on + strand at 5354.007 kb on + strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.008 kb on - strand at 5354.074 kb on + strand at 5354.075 kb on - strand at 5354.075 kb on - strand at 5354.075 kb on - strand at 5354.080 kb on + strand at 5354.114 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.125 kb on + strand at 5354.126 kb on - strand at 5354.137 kb on + strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.138 kb on - strand at 5354.174 kb on - strand at 5354.174 kb on - strand at 5354.174 kb on - strand at 5354.176 kb on + strand at 5354.177 kb on - strand at 5354.177 kb on - strand at 5354.208 kb on + strand at 5354.208 kb on + strand at 5354.208 kb on + strand at 5354.208 kb on + strand at 5354.209 kb on - strand at 5354.209 kb on - strand at 5354.209 kb on - strand at 5354.263 kb on + strand at 5354.264 kb on - strand at 5354.264 kb on - strand at 5354.264 kb on - strand at 5354.330 kb on + strand at 5354.331 kb on - strand at 5354.331 kb on - strand at 5354.332 kb on + strand at 5354.332 kb on + strand at 5354.333 kb on - strand at 5354.389 kb on - strand, within Psyr_4493 at 5354.443 kb on - strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.450 kb on + strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.451 kb on - strand, within Psyr_4493 at 5354.453 kb on - strand, within Psyr_4493 at 5354.453 kb on - strand, within Psyr_4493 at 5354.462 kb on + strand, within Psyr_4493 at 5354.519 kb on + strand, within Psyr_4493 at 5354.519 kb on + strand, within Psyr_4493 at 5354.520 kb on - strand, within Psyr_4493 at 5354.541 kb on + strand, within Psyr_4493 at 5354.541 kb on + strand, within Psyr_4493 at 5354.542 kb on - strand, within Psyr_4493 at 5354.542 kb on - strand, within Psyr_4493 at 5354.542 kb on - strand, within Psyr_4493 at 5354.554 kb on + strand, within Psyr_4493 at 5354.555 kb on - strand, within Psyr_4493 at 5354.582 kb on + strand, within Psyr_4493 at 5354.582 kb on + strand, within Psyr_4493 at 5354.582 kb on + strand, within Psyr_4493 at 5354.632 kb on + strand, within Psyr_4493 at 5354.633 kb on - strand, within Psyr_4493 at 5354.633 kb on - strand, within Psyr_4493 at 5354.722 kb on + strand, within Psyr_4493 at 5354.723 kb on - strand, within Psyr_4493 at 5354.778 kb on - strand, within Psyr_4493 at 5354.796 kb on - strand, within Psyr_4493 at 5354.840 kb on - strand, within Psyr_4493 at 5354.922 kb on + strand, within Psyr_4493
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,352,722 + Psyr_4490 0.79 -0.2 5,352,722 + Psyr_4490 0.79 -0.8 5,352,723 - Psyr_4490 0.79 +1.8 5,352,917 + +0.2 5,352,923 - +0.2 5,352,936 - +0.2 5,352,949 - -0.2 5,352,966 + -2.5 5,352,967 - -1.2 5,353,111 + Psyr_4491 0.17 -0.1 5,353,111 + Psyr_4491 0.17 +1.1 5,353,111 + Psyr_4491 0.17 +0.9 5,353,112 - Psyr_4491 0.17 -0.9 5,353,530 - Psyr_4491 0.79 -0.2 5,353,656 + -0.4 5,353,669 + -1.0 5,353,709 + -0.0 5,353,709 + -0.1 5,353,709 + -0.0 5,353,709 + -1.2 5,353,709 + +0.3 5,353,709 + -0.2 5,353,709 + +0.6 5,353,710 - -0.8 5,353,710 - +0.5 5,353,710 - +0.5 5,353,710 - +0.1 5,353,885 - Psyr_4492 0.71 -0.4 5,353,885 - Psyr_4492 0.71 -2.1 5,354,007 + -0.0 5,354,007 + -0.2 5,354,007 + -0.6 5,354,008 - +0.2 5,354,008 - -0.9 5,354,008 - +0.5 5,354,008 - -1.1 5,354,008 - -2.0 5,354,008 - +0.7 5,354,074 + +0.3 5,354,075 - +0.1 5,354,075 - +1.2 5,354,075 - +1.0 5,354,080 + +0.9 5,354,114 + -0.4 5,354,125 + +0.6 5,354,125 + +1.0 5,354,125 + +0.4 5,354,125 + +0.3 5,354,125 + +0.0 5,354,125 + +2.0 5,354,125 + +0.2 5,354,125 + +0.1 5,354,125 + -0.9 5,354,125 + -0.1 5,354,126 - -0.4 5,354,137 + -1.3 5,354,138 - -0.1 5,354,138 - +3.2 5,354,138 - -0.3 5,354,138 - -0.1 5,354,138 - +1.9 5,354,174 - +0.5 5,354,174 - +0.5 5,354,174 - +0.8 5,354,176 + +0.6 5,354,177 - +0.2 5,354,177 - -0.9 5,354,208 + +1.2 5,354,208 + -0.5 5,354,208 + -2.1 5,354,208 + +0.6 5,354,209 - +0.5 5,354,209 - -0.7 5,354,209 - -0.1 5,354,263 + -1.0 5,354,264 - +0.4 5,354,264 - +0.3 5,354,264 - -1.7 5,354,330 + -0.1 5,354,331 - -0.4 5,354,331 - +1.0 5,354,332 + +0.0 5,354,332 + +0.6 5,354,333 - -0.1 5,354,389 - Psyr_4493 0.10 -0.4 5,354,443 - Psyr_4493 0.12 +0.8 5,354,450 + Psyr_4493 0.12 +1.2 5,354,450 + Psyr_4493 0.12 -0.0 5,354,450 + Psyr_4493 0.12 -1.4 5,354,450 + Psyr_4493 0.12 -1.6 5,354,450 + Psyr_4493 0.12 -0.5 5,354,450 + Psyr_4493 0.12 +0.4 5,354,450 + Psyr_4493 0.12 -1.3 5,354,451 - Psyr_4493 0.12 +2.0 5,354,451 - Psyr_4493 0.12 +1.7 5,354,451 - Psyr_4493 0.12 -0.7 5,354,451 - Psyr_4493 0.12 -0.4 5,354,451 - Psyr_4493 0.12 -0.0 5,354,451 - Psyr_4493 0.12 -0.1 5,354,451 - Psyr_4493 0.12 -2.3 5,354,451 - Psyr_4493 0.12 -0.4 5,354,451 - Psyr_4493 0.12 +0.4 5,354,451 - Psyr_4493 0.12 +0.3 5,354,451 - Psyr_4493 0.12 +1.2 5,354,453 - Psyr_4493 0.13 +1.9 5,354,453 - Psyr_4493 0.13 -0.5 5,354,462 + Psyr_4493 0.13 +3.2 5,354,519 + Psyr_4493 0.15 -2.0 5,354,519 + Psyr_4493 0.15 -1.1 5,354,520 - Psyr_4493 0.15 +0.4 5,354,541 + Psyr_4493 0.16 +0.7 5,354,541 + Psyr_4493 0.16 -0.1 5,354,542 - Psyr_4493 0.16 +0.9 5,354,542 - Psyr_4493 0.16 +0.6 5,354,542 - Psyr_4493 0.16 -0.4 5,354,554 + Psyr_4493 0.16 -0.2 5,354,555 - Psyr_4493 0.16 +0.2 5,354,582 + Psyr_4493 0.17 -1.8 5,354,582 + Psyr_4493 0.17 -1.2 5,354,582 + Psyr_4493 0.17 -0.6 5,354,632 + Psyr_4493 0.19 +0.6 5,354,633 - Psyr_4493 0.19 -1.0 5,354,633 - Psyr_4493 0.19 +0.1 5,354,722 + Psyr_4493 0.22 +2.4 5,354,723 - Psyr_4493 0.22 +0.8 5,354,778 - Psyr_4493 0.24 +0.6 5,354,796 - Psyr_4493 0.24 -0.1 5,354,840 - Psyr_4493 0.26 +0.4 5,354,922 + Psyr_4493 0.29 -0.5
Or see this region's nucleotide sequence