Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4427 and Psyr_4428 overlap by 1 nucleotides Psyr_4428 and Psyr_4429 overlap by 4 nucleotides Psyr_4429 and Psyr_4430 are separated by 109 nucleotides
Psyr_4427: Psyr_4427 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 5,295,137 to 5,296,726
_4427
Psyr_4428: Psyr_4428 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 5,296,726 to 5,297,805
_4428
Psyr_4429: Psyr_4429 - ABC transporter, at 5,297,802 to 5,298,662
_4429
Psyr_4430: Psyr_4430 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 5,298,772 to 5,299,470
_4430
Position (kb) 5296
5297
5298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5295.974 kb on + strand, within Psyr_4427 at 5295.974 kb on + strand, within Psyr_4427 at 5295.974 kb on + strand, within Psyr_4427 at 5295.974 kb on + strand, within Psyr_4427 at 5295.974 kb on + strand, within Psyr_4427 at 5295.974 kb on + strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5295.975 kb on - strand, within Psyr_4427 at 5296.023 kb on - strand, within Psyr_4427 at 5296.026 kb on - strand, within Psyr_4427 at 5296.110 kb on - strand, within Psyr_4427 at 5296.110 kb on - strand, within Psyr_4427 at 5296.110 kb on - strand, within Psyr_4427 at 5296.249 kb on + strand, within Psyr_4427 at 5296.250 kb on - strand, within Psyr_4427 at 5296.265 kb on + strand, within Psyr_4427 at 5296.265 kb on + strand, within Psyr_4427 at 5296.266 kb on - strand, within Psyr_4427 at 5296.266 kb on - strand, within Psyr_4427 at 5296.464 kb on + strand, within Psyr_4427 at 5296.465 kb on - strand, within Psyr_4427 at 5296.465 kb on - strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.511 kb on + strand, within Psyr_4427 at 5296.512 kb on - strand, within Psyr_4427 at 5296.512 kb on - strand, within Psyr_4427 at 5296.512 kb on - strand, within Psyr_4427 at 5296.512 kb on - strand, within Psyr_4427 at 5296.512 kb on - strand, within Psyr_4427 at 5296.742 kb on + strand at 5296.742 kb on + strand at 5296.742 kb on + strand at 5296.742 kb on + strand at 5296.743 kb on - strand at 5296.743 kb on - strand at 5296.745 kb on + strand at 5296.745 kb on + strand at 5296.746 kb on - strand at 5296.746 kb on - strand at 5296.746 kb on - strand at 5296.746 kb on - strand at 5296.746 kb on - strand at 5296.870 kb on + strand, within Psyr_4428 at 5296.871 kb on - strand, within Psyr_4428 at 5296.903 kb on + strand, within Psyr_4428 at 5297.008 kb on + strand, within Psyr_4428 at 5297.008 kb on + strand, within Psyr_4428 at 5297.008 kb on + strand, within Psyr_4428 at 5297.008 kb on + strand, within Psyr_4428 at 5297.008 kb on + strand, within Psyr_4428 at 5297.008 kb on + strand, within Psyr_4428 at 5297.008 kb on + strand, within Psyr_4428 at 5297.009 kb on - strand, within Psyr_4428 at 5297.009 kb on - strand, within Psyr_4428 at 5297.009 kb on - strand, within Psyr_4428 at 5297.009 kb on - strand, within Psyr_4428 at 5297.009 kb on - strand, within Psyr_4428 at 5297.009 kb on - strand, within Psyr_4428 at 5297.084 kb on - strand, within Psyr_4428 at 5297.197 kb on + strand, within Psyr_4428 at 5297.197 kb on + strand, within Psyr_4428 at 5297.197 kb on + strand, within Psyr_4428 at 5297.197 kb on + strand, within Psyr_4428 at 5297.197 kb on + strand, within Psyr_4428 at 5297.197 kb on + strand, within Psyr_4428 at 5297.198 kb on - strand, within Psyr_4428 at 5297.198 kb on - strand, within Psyr_4428 at 5297.198 kb on - strand, within Psyr_4428 at 5297.383 kb on + strand, within Psyr_4428 at 5297.383 kb on + strand, within Psyr_4428 at 5297.384 kb on - strand, within Psyr_4428 at 5297.384 kb on - strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.542 kb on + strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.543 kb on - strand, within Psyr_4428 at 5297.710 kb on + strand at 5297.755 kb on + strand at 5297.755 kb on + strand at 5297.755 kb on + strand at 5297.755 kb on + strand at 5297.756 kb on - strand at 5297.756 kb on - strand at 5297.756 kb on - strand at 5297.756 kb on - strand at 5297.756 kb on - strand at 5297.756 kb on - strand at 5297.756 kb on - strand at 5298.000 kb on + strand, within Psyr_4429 at 5298.000 kb on + strand, within Psyr_4429 at 5298.001 kb on - strand, within Psyr_4429 at 5298.196 kb on + strand, within Psyr_4429 at 5298.197 kb on - strand, within Psyr_4429 at 5298.326 kb on - strand, within Psyr_4429 at 5298.341 kb on + strand, within Psyr_4429 at 5298.342 kb on - strand, within Psyr_4429 at 5298.342 kb on - strand, within Psyr_4429 at 5298.342 kb on - strand, within Psyr_4429 at 5298.342 kb on - strand, within Psyr_4429 at 5298.342 kb on - strand, within Psyr_4429 at 5298.424 kb on + strand, within Psyr_4429 at 5298.424 kb on + strand, within Psyr_4429 at 5298.424 kb on + strand, within Psyr_4429 at 5298.424 kb on + strand, within Psyr_4429 at 5298.424 kb on + strand, within Psyr_4429 at 5298.425 kb on - strand, within Psyr_4429 at 5298.425 kb on - strand, within Psyr_4429 at 5298.619 kb on + strand at 5298.619 kb on + strand at 5298.619 kb on + strand at 5298.620 kb on - strand at 5298.649 kb on - strand at 5298.649 kb on - strand at 5298.649 kb on - strand at 5298.684 kb on - strand at 5298.684 kb on - strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.701 kb on + strand at 5298.702 kb on - strand at 5298.702 kb on - strand at 5298.702 kb on - strand at 5298.702 kb on - strand at 5298.702 kb on - strand at 5298.728 kb on + strand at 5298.728 kb on + strand at 5298.728 kb on + strand at 5298.728 kb on + strand at 5298.729 kb on - strand at 5298.729 kb on - strand at 5298.729 kb on - strand at 5298.729 kb on - strand at 5298.729 kb on - strand at 5298.729 kb on - strand at 5298.753 kb on + strand at 5298.753 kb on + strand at 5298.753 kb on + strand at 5298.753 kb on + strand at 5298.753 kb on + strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.754 kb on - strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.755 kb on + strand at 5298.756 kb on - strand at 5298.756 kb on - strand at 5298.756 kb on - strand at 5298.756 kb on - strand at 5298.756 kb on - strand at 5298.756 kb on - strand at 5298.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,295,974 + Psyr_4427 0.53 +0.5 5,295,974 + Psyr_4427 0.53 +0.5 5,295,974 + Psyr_4427 0.53 +0.4 5,295,974 + Psyr_4427 0.53 +1.7 5,295,974 + Psyr_4427 0.53 -0.6 5,295,974 + Psyr_4427 0.53 -0.1 5,295,975 - Psyr_4427 0.53 +0.9 5,295,975 - Psyr_4427 0.53 +0.4 5,295,975 - Psyr_4427 0.53 +0.4 5,295,975 - Psyr_4427 0.53 -0.3 5,295,975 - Psyr_4427 0.53 +0.8 5,295,975 - Psyr_4427 0.53 +0.2 5,295,975 - Psyr_4427 0.53 +0.5 5,295,975 - Psyr_4427 0.53 +0.1 5,296,023 - Psyr_4427 0.56 -0.6 5,296,026 - Psyr_4427 0.56 -0.3 5,296,110 - Psyr_4427 0.61 -0.9 5,296,110 - Psyr_4427 0.61 +0.1 5,296,110 - Psyr_4427 0.61 +0.0 5,296,249 + Psyr_4427 0.70 +0.2 5,296,250 - Psyr_4427 0.70 +0.4 5,296,265 + Psyr_4427 0.71 +0.5 5,296,265 + Psyr_4427 0.71 -0.1 5,296,266 - Psyr_4427 0.71 +0.3 5,296,266 - Psyr_4427 0.71 -2.3 5,296,464 + Psyr_4427 0.83 -0.2 5,296,465 - Psyr_4427 0.84 -0.3 5,296,465 - Psyr_4427 0.84 -1.1 5,296,511 + Psyr_4427 0.86 -0.2 5,296,511 + Psyr_4427 0.86 +1.2 5,296,511 + Psyr_4427 0.86 -0.0 5,296,511 + Psyr_4427 0.86 -0.3 5,296,511 + Psyr_4427 0.86 -2.6 5,296,511 + Psyr_4427 0.86 -0.6 5,296,511 + Psyr_4427 0.86 +1.2 5,296,511 + Psyr_4427 0.86 +0.7 5,296,512 - Psyr_4427 0.86 +0.9 5,296,512 - Psyr_4427 0.86 -0.4 5,296,512 - Psyr_4427 0.86 -0.8 5,296,512 - Psyr_4427 0.86 -0.8 5,296,512 - Psyr_4427 0.86 -0.5 5,296,742 + -0.1 5,296,742 + +2.0 5,296,742 + -0.0 5,296,742 + -0.7 5,296,743 - -1.1 5,296,743 - +0.3 5,296,745 + -1.4 5,296,745 + +1.5 5,296,746 - +0.6 5,296,746 - +1.2 5,296,746 - +0.2 5,296,746 - -0.3 5,296,746 - +0.7 5,296,870 + Psyr_4428 0.13 -0.2 5,296,871 - Psyr_4428 0.13 -0.2 5,296,903 + Psyr_4428 0.16 -0.1 5,297,008 + Psyr_4428 0.26 -1.1 5,297,008 + Psyr_4428 0.26 +0.4 5,297,008 + Psyr_4428 0.26 -0.9 5,297,008 + Psyr_4428 0.26 +0.1 5,297,008 + Psyr_4428 0.26 -0.7 5,297,008 + Psyr_4428 0.26 -0.0 5,297,008 + Psyr_4428 0.26 +0.7 5,297,009 - Psyr_4428 0.26 -1.2 5,297,009 - Psyr_4428 0.26 +0.5 5,297,009 - Psyr_4428 0.26 -0.2 5,297,009 - Psyr_4428 0.26 -1.0 5,297,009 - Psyr_4428 0.26 -0.1 5,297,009 - Psyr_4428 0.26 +2.4 5,297,084 - Psyr_4428 0.33 +1.0 5,297,197 + Psyr_4428 0.44 +1.6 5,297,197 + Psyr_4428 0.44 +3.0 5,297,197 + Psyr_4428 0.44 -0.4 5,297,197 + Psyr_4428 0.44 -0.5 5,297,197 + Psyr_4428 0.44 +0.9 5,297,197 + Psyr_4428 0.44 -1.7 5,297,198 - Psyr_4428 0.44 +0.7 5,297,198 - Psyr_4428 0.44 +3.2 5,297,198 - Psyr_4428 0.44 -1.2 5,297,383 + Psyr_4428 0.61 +0.4 5,297,383 + Psyr_4428 0.61 +0.2 5,297,384 - Psyr_4428 0.61 +0.4 5,297,384 - Psyr_4428 0.61 -0.4 5,297,542 + Psyr_4428 0.76 -0.0 5,297,542 + Psyr_4428 0.76 -0.0 5,297,542 + Psyr_4428 0.76 -1.1 5,297,542 + Psyr_4428 0.76 +0.1 5,297,542 + Psyr_4428 0.76 +1.0 5,297,542 + Psyr_4428 0.76 +0.4 5,297,542 + Psyr_4428 0.76 +0.1 5,297,542 + Psyr_4428 0.76 +0.1 5,297,542 + Psyr_4428 0.76 -0.8 5,297,542 + Psyr_4428 0.76 +0.4 5,297,542 + Psyr_4428 0.76 +0.3 5,297,542 + Psyr_4428 0.76 -0.5 5,297,542 + Psyr_4428 0.76 -0.0 5,297,542 + Psyr_4428 0.76 +1.1 5,297,542 + Psyr_4428 0.76 -0.6 5,297,542 + Psyr_4428 0.76 -0.2 5,297,543 - Psyr_4428 0.76 -2.1 5,297,543 - Psyr_4428 0.76 +1.4 5,297,543 - Psyr_4428 0.76 +1.2 5,297,543 - Psyr_4428 0.76 +0.7 5,297,543 - Psyr_4428 0.76 +1.3 5,297,543 - Psyr_4428 0.76 -0.7 5,297,543 - Psyr_4428 0.76 -0.6 5,297,543 - Psyr_4428 0.76 -0.2 5,297,543 - Psyr_4428 0.76 +2.2 5,297,543 - Psyr_4428 0.76 +0.6 5,297,543 - Psyr_4428 0.76 +1.9 5,297,543 - Psyr_4428 0.76 -1.0 5,297,543 - Psyr_4428 0.76 +0.2 5,297,543 - Psyr_4428 0.76 +1.9 5,297,543 - Psyr_4428 0.76 -2.9 5,297,543 - Psyr_4428 0.76 -0.1 5,297,543 - Psyr_4428 0.76 -0.5 5,297,543 - Psyr_4428 0.76 +1.4 5,297,543 - Psyr_4428 0.76 +2.9 5,297,543 - Psyr_4428 0.76 +0.3 5,297,543 - Psyr_4428 0.76 +0.2 5,297,710 + +0.3 5,297,755 + -0.5 5,297,755 + +0.7 5,297,755 + +1.2 5,297,755 + +0.1 5,297,756 - +0.6 5,297,756 - +1.8 5,297,756 - +0.6 5,297,756 - +0.8 5,297,756 - -1.7 5,297,756 - +0.2 5,297,756 - -0.2 5,298,000 + Psyr_4429 0.23 -0.2 5,298,000 + Psyr_4429 0.23 -0.3 5,298,001 - Psyr_4429 0.23 +0.2 5,298,196 + Psyr_4429 0.46 +0.3 5,298,197 - Psyr_4429 0.46 +0.1 5,298,326 - Psyr_4429 0.61 -0.5 5,298,341 + Psyr_4429 0.63 -0.2 5,298,342 - Psyr_4429 0.63 -1.6 5,298,342 - Psyr_4429 0.63 -1.2 5,298,342 - Psyr_4429 0.63 +0.5 5,298,342 - Psyr_4429 0.63 +0.0 5,298,342 - Psyr_4429 0.63 -0.9 5,298,424 + Psyr_4429 0.72 +0.7 5,298,424 + Psyr_4429 0.72 +1.0 5,298,424 + Psyr_4429 0.72 +3.2 5,298,424 + Psyr_4429 0.72 +0.7 5,298,424 + Psyr_4429 0.72 +0.4 5,298,425 - Psyr_4429 0.72 -1.2 5,298,425 - Psyr_4429 0.72 -0.1 5,298,619 + -2.6 5,298,619 + +0.1 5,298,619 + -0.5 5,298,620 - -0.0 5,298,649 - +0.6 5,298,649 - -0.4 5,298,649 - +0.9 5,298,684 - +0.2 5,298,684 - +0.7 5,298,701 + -0.4 5,298,701 + -1.4 5,298,701 + -1.4 5,298,701 + -0.7 5,298,701 + +0.6 5,298,701 + -1.4 5,298,701 + -1.2 5,298,701 + -1.2 5,298,701 + +1.2 5,298,701 + -0.3 5,298,702 - -1.2 5,298,702 - -0.1 5,298,702 - +1.0 5,298,702 - -1.7 5,298,702 - +1.1 5,298,728 + -0.4 5,298,728 + -0.7 5,298,728 + +0.1 5,298,728 + -0.2 5,298,729 - +0.6 5,298,729 - -1.5 5,298,729 - +0.6 5,298,729 - -0.3 5,298,729 - -1.6 5,298,729 - +1.2 5,298,753 + +0.3 5,298,753 + -1.0 5,298,753 + -0.8 5,298,753 + -0.3 5,298,753 + +0.7 5,298,754 - -0.4 5,298,754 - +2.0 5,298,754 - -0.7 5,298,754 - +0.7 5,298,754 - +0.7 5,298,754 - +1.6 5,298,754 - +0.5 5,298,754 - -2.3 5,298,754 - -1.0 5,298,755 + -0.1 5,298,755 + +0.4 5,298,755 + +1.2 5,298,755 + -0.8 5,298,755 + +0.0 5,298,755 + +0.2 5,298,755 + +2.2 5,298,755 + +2.2 5,298,755 + +0.2 5,298,755 + -1.1 5,298,755 + -1.4 5,298,755 + -0.9 5,298,755 + -0.3 5,298,755 + -0.4 5,298,756 - +0.2 5,298,756 - +0.2 5,298,756 - +0.0 5,298,756 - +0.1 5,298,756 - +0.6 5,298,756 - +1.0 5,298,800 - +0.2
Or see this region's nucleotide sequence