Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3959 and Psyr_3960 overlap by 32 nucleotides Psyr_3960 and Psyr_3961 overlap by 17 nucleotides Psyr_3961 and Psyr_3962 are separated by 146 nucleotides
Psyr_3959: Psyr_3959 - L-aspartate oxidase, at 4,707,097 to 4,708,713
_3959
Psyr_3960: Psyr_3960 - conserved hypothetical protein, at 4,708,682 to 4,709,146
_3960
Psyr_3961: Psyr_3961 - Protein of unknown function DUF339, at 4,709,130 to 4,709,384
_3961
Psyr_3962: Psyr_3962 - Glycine cleavage T protein (aminomethyl transferase), at 4,709,531 to 4,710,478
_3962
Position (kb) 4708
4709
4710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4707.727 kb on + strand, within Psyr_3959 at 4707.728 kb on - strand, within Psyr_3959 at 4707.728 kb on - strand, within Psyr_3959 at 4707.728 kb on - strand, within Psyr_3959 at 4707.733 kb on + strand, within Psyr_3959 at 4707.841 kb on + strand, within Psyr_3959 at 4707.841 kb on + strand, within Psyr_3959 at 4707.841 kb on + strand, within Psyr_3959 at 4707.842 kb on - strand, within Psyr_3959 at 4708.025 kb on - strand, within Psyr_3959 at 4708.081 kb on + strand, within Psyr_3959 at 4708.082 kb on - strand, within Psyr_3959 at 4708.082 kb on - strand, within Psyr_3959 at 4708.082 kb on - strand, within Psyr_3959 at 4708.150 kb on + strand, within Psyr_3959 at 4708.150 kb on + strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.207 kb on + strand, within Psyr_3959 at 4708.207 kb on + strand, within Psyr_3959 at 4708.207 kb on + strand, within Psyr_3959 at 4708.208 kb on - strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.445 kb on - strand, within Psyr_3959 at 4708.445 kb on - strand, within Psyr_3959 at 4708.528 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.639 kb on + strand at 4708.651 kb on + strand at 4708.659 kb on + strand at 4708.683 kb on + strand at 4708.684 kb on - strand at 4708.684 kb on - strand at 4708.684 kb on - strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.771 kb on + strand, within Psyr_3960 at 4708.771 kb on + strand, within Psyr_3960 at 4708.865 kb on + strand, within Psyr_3960 at 4708.866 kb on - strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.974 kb on - strand, within Psyr_3960 at 4709.001 kb on - strand, within Psyr_3960 at 4709.001 kb on - strand, within Psyr_3960 at 4709.046 kb on + strand, within Psyr_3960 at 4709.047 kb on - strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.402 kb on - strand at 4709.402 kb on - strand at 4709.402 kb on - strand at 4709.412 kb on + strand at 4709.412 kb on + strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.414 kb on + strand at 4709.414 kb on + strand at 4709.414 kb on + strand at 4709.415 kb on - strand at 4709.415 kb on - strand at 4709.415 kb on - strand at 4709.415 kb on - strand at 4709.467 kb on + strand at 4709.468 kb on - strand at 4709.468 kb on - strand at 4709.479 kb on + strand at 4709.496 kb on + strand at 4709.496 kb on + strand at 4709.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 4,707,727 + Psyr_3959 0.39 -0.5 4,707,728 - Psyr_3959 0.39 -2.1 4,707,728 - Psyr_3959 0.39 -1.7 4,707,728 - Psyr_3959 0.39 +2.6 4,707,733 + Psyr_3959 0.39 -0.2 4,707,841 + Psyr_3959 0.46 -1.4 4,707,841 + Psyr_3959 0.46 +2.8 4,707,841 + Psyr_3959 0.46 +0.6 4,707,842 - Psyr_3959 0.46 +0.0 4,708,025 - Psyr_3959 0.57 +0.3 4,708,081 + Psyr_3959 0.61 -1.0 4,708,082 - Psyr_3959 0.61 -2.1 4,708,082 - Psyr_3959 0.61 +0.2 4,708,082 - Psyr_3959 0.61 +1.3 4,708,150 + Psyr_3959 0.65 -1.3 4,708,150 + Psyr_3959 0.65 -2.1 4,708,151 - Psyr_3959 0.65 -0.8 4,708,151 - Psyr_3959 0.65 +1.8 4,708,151 - Psyr_3959 0.65 +1.0 4,708,151 - Psyr_3959 0.65 -2.1 4,708,151 - Psyr_3959 0.65 -2.0 4,708,207 + Psyr_3959 0.69 +0.8 4,708,207 + Psyr_3959 0.69 +0.2 4,708,207 + Psyr_3959 0.69 +0.0 4,708,208 - Psyr_3959 0.69 +0.4 4,708,444 + Psyr_3959 0.83 +0.0 4,708,444 + Psyr_3959 0.83 -1.0 4,708,444 + Psyr_3959 0.83 -1.5 4,708,445 - Psyr_3959 0.83 +0.4 4,708,445 - Psyr_3959 0.83 -0.8 4,708,528 + Psyr_3959 0.88 +1.3 4,708,537 + Psyr_3959 0.89 +1.0 4,708,537 + Psyr_3959 0.89 -1.7 4,708,537 + Psyr_3959 0.89 -0.7 4,708,537 + Psyr_3959 0.89 -0.2 4,708,537 + Psyr_3959 0.89 -1.5 4,708,537 + Psyr_3959 0.89 +2.2 4,708,537 + Psyr_3959 0.89 +0.7 4,708,537 + Psyr_3959 0.89 +3.6 4,708,537 + Psyr_3959 0.89 -1.8 4,708,538 - Psyr_3959 0.89 -0.3 4,708,538 - Psyr_3959 0.89 +1.1 4,708,538 - Psyr_3959 0.89 +1.0 4,708,538 - Psyr_3959 0.89 -0.1 4,708,538 - Psyr_3959 0.89 +0.0 4,708,639 + -1.9 4,708,651 + -1.9 4,708,659 + -0.0 4,708,683 + -0.3 4,708,684 - -1.3 4,708,684 - -2.3 4,708,684 - +0.2 4,708,702 + -0.1 4,708,702 + +3.0 4,708,702 + +0.7 4,708,702 + +0.5 4,708,702 + -0.7 4,708,702 + +0.3 4,708,702 + +0.2 4,708,702 + +0.4 4,708,702 + -1.0 4,708,702 + -1.5 4,708,702 + -0.1 4,708,702 + +0.5 4,708,703 - -1.4 4,708,703 - +0.3 4,708,703 - -1.3 4,708,703 - -0.1 4,708,703 - +0.6 4,708,703 - +0.7 4,708,703 - +1.0 4,708,703 - -1.0 4,708,703 - -0.1 4,708,703 - -0.4 4,708,771 + Psyr_3960 0.19 -1.3 4,708,771 + Psyr_3960 0.19 -0.7 4,708,865 + Psyr_3960 0.39 -0.3 4,708,866 - Psyr_3960 0.40 -1.2 4,708,892 + Psyr_3960 0.45 -0.9 4,708,892 + Psyr_3960 0.45 -1.0 4,708,892 + Psyr_3960 0.45 +1.8 4,708,892 + Psyr_3960 0.45 -0.3 4,708,893 - Psyr_3960 0.45 +2.0 4,708,893 - Psyr_3960 0.45 -0.0 4,708,893 - Psyr_3960 0.45 -2.8 4,708,893 - Psyr_3960 0.45 +0.0 4,708,893 - Psyr_3960 0.45 +0.6 4,708,893 - Psyr_3960 0.45 -0.1 4,708,893 - Psyr_3960 0.45 -0.1 4,708,974 - Psyr_3960 0.63 +0.4 4,709,001 - Psyr_3960 0.69 +0.2 4,709,001 - Psyr_3960 0.69 -0.5 4,709,046 + Psyr_3960 0.78 -0.6 4,709,047 - Psyr_3960 0.78 -0.8 4,709,082 + Psyr_3960 0.86 -1.8 4,709,082 + Psyr_3960 0.86 +0.2 4,709,082 + Psyr_3960 0.86 -0.5 4,709,083 - Psyr_3960 0.86 -0.8 4,709,083 - Psyr_3960 0.86 +0.7 4,709,083 - Psyr_3960 0.86 -0.4 4,709,083 - Psyr_3960 0.86 -0.5 4,709,083 - Psyr_3960 0.86 +0.3 4,709,402 - -0.2 4,709,402 - +0.6 4,709,402 - -1.5 4,709,412 + -1.0 4,709,412 + +0.0 4,709,413 - -1.8 4,709,413 - -0.4 4,709,413 - +1.0 4,709,413 - -0.2 4,709,413 - -1.2 4,709,413 - -0.0 4,709,413 - +0.2 4,709,414 + -0.1 4,709,414 + +0.5 4,709,414 + +0.7 4,709,415 - +0.0 4,709,415 - +0.7 4,709,415 - +0.5 4,709,415 - +0.0 4,709,467 + -1.3 4,709,468 - -0.1 4,709,468 - +0.2 4,709,479 + -0.4 4,709,496 + +0.6 4,709,496 + +1.3 4,709,496 + -0.8
Or see this region's nucleotide sequence