Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3912

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3910 and Psyr_3911 overlap by 4 nucleotidesPsyr_3911 and Psyr_3912 are separated by 60 nucleotidesPsyr_3912 and Psyr_3913 are separated by 10 nucleotides Psyr_3910: Psyr_3910 - L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein, at 4,652,944 to 4,653,609 _3910 Psyr_3911: Psyr_3911 - L-aspartate ABC transporter ATP-binding protein / L-glutamate ABC transporter ATP-binding protein, at 4,653,606 to 4,654,340 _3911 Psyr_3912: Psyr_3912 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,654,401 to 4,656,308 _3912 Psyr_3913: Psyr_3913 - Helix-turn-helix, Fis-type, at 4,656,319 to 4,657,647 _3913 Position (kb) 4654 4655 4656 4657Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.544 kb on + strandat 4653.544 kb on + strandat 4653.544 kb on + strandat 4653.545 kb on - strandat 4653.606 kb on - strandat 4653.653 kb on - strandat 4653.653 kb on - strandat 4654.338 kb on + strandat 4654.339 kb on - strandat 4654.346 kb on - strandat 4654.346 kb on - strandat 4654.518 kb on + strandat 4654.518 kb on + strandat 4654.518 kb on + strandat 4654.519 kb on - strandat 4654.626 kb on + strand, within Psyr_3912at 4654.626 kb on + strand, within Psyr_3912at 4654.626 kb on + strand, within Psyr_3912at 4654.626 kb on + strand, within Psyr_3912at 4654.626 kb on + strand, within Psyr_3912at 4654.626 kb on + strand, within Psyr_3912at 4654.626 kb on + strand, within Psyr_3912at 4654.626 kb on + strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.627 kb on - strand, within Psyr_3912at 4654.632 kb on + strand, within Psyr_3912at 4654.632 kb on + strand, within Psyr_3912at 4654.632 kb on + strand, within Psyr_3912at 4654.633 kb on - strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.761 kb on + strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.762 kb on - strand, within Psyr_3912at 4654.765 kb on + strand, within Psyr_3912at 4654.765 kb on + strand, within Psyr_3912at 4654.765 kb on + strand, within Psyr_3912at 4654.765 kb on + strand, within Psyr_3912at 4654.765 kb on + strand, within Psyr_3912at 4654.766 kb on - strand, within Psyr_3912at 4654.766 kb on - strand, within Psyr_3912at 4654.766 kb on - strand, within Psyr_3912at 4654.766 kb on - strand, within Psyr_3912at 4654.766 kb on - strand, within Psyr_3912at 4654.766 kb on - strand, within Psyr_3912at 4654.772 kb on + strand, within Psyr_3912at 4654.821 kb on + strand, within Psyr_3912at 4654.851 kb on + strand, within Psyr_3912at 4654.852 kb on - strand, within Psyr_3912at 4654.890 kb on + strand, within Psyr_3912at 4654.924 kb on - strand, within Psyr_3912at 4654.926 kb on + strand, within Psyr_3912at 4654.926 kb on + strand, within Psyr_3912at 4654.926 kb on + strand, within Psyr_3912at 4655.148 kb on + strand, within Psyr_3912at 4655.148 kb on + strand, within Psyr_3912at 4655.148 kb on + strand, within Psyr_3912at 4655.149 kb on - strand, within Psyr_3912at 4655.149 kb on - strand, within Psyr_3912at 4655.149 kb on - strand, within Psyr_3912at 4655.149 kb on - strand, within Psyr_3912at 4655.149 kb on - strand, within Psyr_3912at 4655.268 kb on + strand, within Psyr_3912at 4655.268 kb on + strand, within Psyr_3912at 4655.269 kb on - strand, within Psyr_3912at 4655.605 kb on + strand, within Psyr_3912at 4655.605 kb on + strand, within Psyr_3912at 4655.605 kb on + strand, within Psyr_3912at 4655.606 kb on - strand, within Psyr_3912at 4656.031 kb on + strand, within Psyr_3912at 4656.032 kb on - strand, within Psyr_3912at 4656.076 kb on + strand, within Psyr_3912at 4656.326 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.371 kb on + strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.372 kb on - strandat 4656.453 kb on + strand, within Psyr_3913at 4656.454 kb on - strand, within Psyr_3913at 4656.623 kb on - strand, within Psyr_3913at 4656.833 kb on + strand, within Psyr_3913at 4656.834 kb on - strand, within Psyr_3913at 4657.172 kb on + strand, within Psyr_3913at 4657.234 kb on + strand, within Psyr_3913at 4657.234 kb on + strand, within Psyr_3913at 4657.235 kb on - strand, within Psyr_3913at 4657.235 kb on - strand, within Psyr_3913

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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4,653,448 + Psyr_3910 0.76 -0.8
4,653,448 + Psyr_3910 0.76 +2.6
4,653,448 + Psyr_3910 0.76 +2.1
4,653,448 + Psyr_3910 0.76 +0.8
4,653,448 + Psyr_3910 0.76 -1.5
4,653,448 + Psyr_3910 0.76 -0.1
4,653,449 - Psyr_3910 0.76 +0.3
4,653,449 - Psyr_3910 0.76 +1.1
4,653,449 - Psyr_3910 0.76 +3.1
4,653,449 - Psyr_3910 0.76 -1.8
4,653,544 + -3.1
4,653,544 + +2.1
4,653,544 + -0.4
4,653,545 - -0.6
4,653,606 - +0.1
4,653,653 - -0.5
4,653,653 - -0.8
4,654,338 + -1.1
4,654,339 - -0.5
4,654,346 - -1.8
4,654,346 - -1.9
4,654,518 + -1.1
4,654,518 + +0.3
4,654,518 + +0.6
4,654,519 - +1.1
4,654,626 + Psyr_3912 0.12 +0.5
4,654,626 + Psyr_3912 0.12 +0.6
4,654,626 + Psyr_3912 0.12 -0.0
4,654,626 + Psyr_3912 0.12 +3.6
4,654,626 + Psyr_3912 0.12 -0.5
4,654,626 + Psyr_3912 0.12 +0.5
4,654,626 + Psyr_3912 0.12 +0.3
4,654,626 + Psyr_3912 0.12 -0.2
4,654,627 - Psyr_3912 0.12 +0.4
4,654,627 - Psyr_3912 0.12 +1.1
4,654,627 - Psyr_3912 0.12 -1.8
4,654,627 - Psyr_3912 0.12 +0.0
4,654,627 - Psyr_3912 0.12 +4.1
4,654,627 - Psyr_3912 0.12 -0.5
4,654,627 - Psyr_3912 0.12 +1.0
4,654,627 - Psyr_3912 0.12 +0.2
4,654,627 - Psyr_3912 0.12 -1.3
4,654,627 - Psyr_3912 0.12 -2.9
4,654,627 - Psyr_3912 0.12 -1.6
4,654,632 + Psyr_3912 0.12 +0.8
4,654,632 + Psyr_3912 0.12 +0.4
4,654,632 + Psyr_3912 0.12 -1.1
4,654,633 - Psyr_3912 0.12 +1.1
4,654,761 + Psyr_3912 0.19 +0.5
4,654,761 + Psyr_3912 0.19 -1.9
4,654,761 + Psyr_3912 0.19 +0.1
4,654,761 + Psyr_3912 0.19 +0.0
4,654,761 + Psyr_3912 0.19 +2.5
4,654,761 + Psyr_3912 0.19 -0.5
4,654,761 + Psyr_3912 0.19 -0.1
4,654,761 + Psyr_3912 0.19 -4.4
4,654,761 + Psyr_3912 0.19 +0.1
4,654,762 - Psyr_3912 0.19 +0.9
4,654,762 - Psyr_3912 0.19 -1.4
4,654,762 - Psyr_3912 0.19 +1.5
4,654,762 - Psyr_3912 0.19 +2.0
4,654,762 - Psyr_3912 0.19 +0.1
4,654,762 - Psyr_3912 0.19 +1.3
4,654,762 - Psyr_3912 0.19 -2.0
4,654,762 - Psyr_3912 0.19 +0.6
4,654,762 - Psyr_3912 0.19 -1.5
4,654,762 - Psyr_3912 0.19 +3.1
4,654,762 - Psyr_3912 0.19 +0.7
4,654,765 + Psyr_3912 0.19 -1.5
4,654,765 + Psyr_3912 0.19 +3.6
4,654,765 + Psyr_3912 0.19 +0.8
4,654,765 + Psyr_3912 0.19 +0.8
4,654,765 + Psyr_3912 0.19 +0.1
4,654,766 - Psyr_3912 0.19 -1.1
4,654,766 - Psyr_3912 0.19 -0.1
4,654,766 - Psyr_3912 0.19 +0.1
4,654,766 - Psyr_3912 0.19 +1.2
4,654,766 - Psyr_3912 0.19 -0.6
4,654,766 - Psyr_3912 0.19 -0.5
4,654,772 + Psyr_3912 0.19 +0.4
4,654,821 + Psyr_3912 0.22 -0.3
4,654,851 + Psyr_3912 0.24 -0.3
4,654,852 - Psyr_3912 0.24 -0.7
4,654,890 + Psyr_3912 0.26 +0.2
4,654,924 - Psyr_3912 0.27 -1.8
4,654,926 + Psyr_3912 0.28 +1.5
4,654,926 + Psyr_3912 0.28 +0.3
4,654,926 + Psyr_3912 0.28 -0.1
4,655,148 + Psyr_3912 0.39 +1.3
4,655,148 + Psyr_3912 0.39 -1.6
4,655,148 + Psyr_3912 0.39 -0.9
4,655,149 - Psyr_3912 0.39 -0.2
4,655,149 - Psyr_3912 0.39 +0.1
4,655,149 - Psyr_3912 0.39 +0.2
4,655,149 - Psyr_3912 0.39 +0.1
4,655,149 - Psyr_3912 0.39 +1.8
4,655,268 + Psyr_3912 0.45 -1.3
4,655,268 + Psyr_3912 0.45 -0.1
4,655,269 - Psyr_3912 0.45 +0.4
4,655,605 + Psyr_3912 0.63 +2.4
4,655,605 + Psyr_3912 0.63 +1.4
4,655,605 + Psyr_3912 0.63 +1.1
4,655,606 - Psyr_3912 0.63 -0.4
4,656,031 + Psyr_3912 0.85 +1.6
4,656,032 - Psyr_3912 0.85 +1.1
4,656,076 + Psyr_3912 0.88 -2.0
4,656,326 + +0.5
4,656,371 + -1.6
4,656,371 + +0.6
4,656,371 + +0.2
4,656,371 + +2.0
4,656,371 + +0.6
4,656,371 + -1.6
4,656,371 + -1.3
4,656,371 + +1.5
4,656,371 + -1.3
4,656,371 + -1.4
4,656,372 - +1.3
4,656,372 - -1.0
4,656,372 - -0.4
4,656,372 - -0.1
4,656,372 - +0.9
4,656,372 - +0.8
4,656,372 - -2.2
4,656,372 - +0.0
4,656,372 - +2.9
4,656,372 - -1.1
4,656,372 - -0.7
4,656,372 - +0.6
4,656,372 - +2.4
4,656,372 - -1.0
4,656,372 - +0.4
4,656,372 - +0.9
4,656,453 + Psyr_3913 0.10 +0.5
4,656,454 - Psyr_3913 0.10 +0.0
4,656,623 - Psyr_3913 0.23 +3.0
4,656,833 + Psyr_3913 0.39 -0.7
4,656,834 - Psyr_3913 0.39 +0.8
4,657,172 + Psyr_3913 0.64 +0.0
4,657,234 + Psyr_3913 0.69 -0.2
4,657,234 + Psyr_3913 0.69 -0.5
4,657,235 - Psyr_3913 0.69 -1.2
4,657,235 - Psyr_3913 0.69 +0.5

Or see this region's nucleotide sequence