Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3660

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3658 and Psyr_3659 are separated by 173 nucleotidesPsyr_3659 and Psyr_3660 are separated by 15 nucleotidesPsyr_3660 and Psyr_3661 are separated by 169 nucleotides Psyr_3658: Psyr_3658 - Rhodanese-like protein, at 4,345,376 to 4,346,329 _3658 Psyr_3659: Psyr_3659 - transcriptional regulator, BolA protein family, at 4,346,503 to 4,346,796 _3659 Psyr_3660: Psyr_3660 - conserved hypothetical protein, at 4,346,812 to 4,347,339 _3660 Psyr_3661: Psyr_3661 - Fumarate hydratase, class II, at 4,347,509 to 4,348,903 _3661 Position (kb) 4346 4347 4348Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.834 kb on - strand, within Psyr_3658at 4345.906 kb on - strand, within Psyr_3658at 4345.906 kb on - strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.981 kb on + strand, within Psyr_3658at 4345.981 kb on + strand, within Psyr_3658at 4346.059 kb on - strand, within Psyr_3658at 4346.283 kb on + strandat 4346.283 kb on + strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.423 kb on + strandat 4346.423 kb on + strandat 4346.490 kb on + strandat 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.571 kb on - strand, within Psyr_3659at 4346.571 kb on - strand, within Psyr_3659at 4346.624 kb on + strand, within Psyr_3659at 4346.625 kb on - strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.691 kb on - strand, within Psyr_3659at 4346.691 kb on - strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.994 kb on - strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.116 kb on + strand, within Psyr_3660at 4347.117 kb on - strand, within Psyr_3660at 4347.117 kb on - strand, within Psyr_3660at 4347.350 kb on + strandat 4347.354 kb on + strandat 4347.354 kb on + strandat 4347.355 kb on - strandat 4347.355 kb on - strandat 4347.395 kb on + strandat 4347.396 kb on - strandat 4347.466 kb on + strandat 4347.467 kb on - strandat 4347.477 kb on - strandat 4347.477 kb on - strandat 4347.493 kb on + strandat 4347.493 kb on + strandat 4347.493 kb on + strandat 4347.494 kb on - strandat 4347.494 kb on - strandat 4347.494 kb on - strandat 4347.501 kb on + strandat 4347.502 kb on - strandat 4347.502 kb on - strandat 4347.502 kb on - strandat 4347.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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4,345,833 + Psyr_3658 0.48 +1.3
4,345,833 + Psyr_3658 0.48 +1.0
4,345,833 + Psyr_3658 0.48 -1.5
4,345,833 + Psyr_3658 0.48 -0.2
4,345,834 - Psyr_3658 0.48 -1.0
4,345,906 - Psyr_3658 0.56 -0.9
4,345,906 - Psyr_3658 0.56 +0.7
4,345,977 + Psyr_3658 0.63 -3.0
4,345,977 + Psyr_3658 0.63 -0.6
4,345,977 + Psyr_3658 0.63 -0.9
4,345,977 + Psyr_3658 0.63 -1.3
4,345,978 - Psyr_3658 0.63 -1.9
4,345,978 - Psyr_3658 0.63 +3.8
4,345,978 - Psyr_3658 0.63 -0.5
4,345,978 - Psyr_3658 0.63 -0.6
4,345,978 - Psyr_3658 0.63 +0.3
4,345,981 + Psyr_3658 0.63 +0.0
4,345,981 + Psyr_3658 0.63 -2.6
4,346,059 - Psyr_3658 0.72 +0.3
4,346,283 + +2.2
4,346,283 + -0.6
4,346,284 - -1.1
4,346,284 - +1.0
4,346,284 - +0.1
4,346,284 - +1.0
4,346,331 + +0.8
4,346,331 + -1.5
4,346,331 + +0.4
4,346,331 + -1.4
4,346,331 + -0.3
4,346,331 + -3.2
4,346,331 + +0.7
4,346,331 + +0.6
4,346,331 + +1.0
4,346,331 + -0.3
4,346,331 + +2.6
4,346,331 + -0.6
4,346,331 + +1.7
4,346,331 + +0.6
4,346,331 + -1.9
4,346,331 + -1.7
4,346,331 + -2.2
4,346,331 + +1.3
4,346,331 + +0.9
4,346,331 + +3.0
4,346,332 - -1.6
4,346,332 - -0.8
4,346,332 - +1.3
4,346,332 - +0.6
4,346,332 - -0.5
4,346,332 - -1.6
4,346,332 - -2.1
4,346,332 - -2.4
4,346,332 - +1.0
4,346,332 - -1.2
4,346,332 - +1.0
4,346,332 - +1.8
4,346,332 - -2.1
4,346,332 - -1.4
4,346,332 - +1.3
4,346,332 - +0.3
4,346,332 - -2.2
4,346,332 - +2.4
4,346,423 + +0.0
4,346,423 + +1.0
4,346,490 + +0.2
4,346,570 + Psyr_3659 0.23 +0.3
4,346,570 + Psyr_3659 0.23 +0.0
4,346,570 + Psyr_3659 0.23 +0.0
4,346,570 + Psyr_3659 0.23 +1.9
4,346,570 + Psyr_3659 0.23 -2.0
4,346,570 + Psyr_3659 0.23 -2.4
4,346,570 + Psyr_3659 0.23 +0.0
4,346,570 + Psyr_3659 0.23 +3.3
4,346,571 - Psyr_3659 0.23 +0.7
4,346,571 - Psyr_3659 0.23 +0.0
4,346,624 + Psyr_3659 0.41 +0.5
4,346,625 - Psyr_3659 0.41 +1.5
4,346,690 + Psyr_3659 0.64 +1.5
4,346,690 + Psyr_3659 0.64 -0.1
4,346,690 + Psyr_3659 0.64 -0.6
4,346,690 + Psyr_3659 0.64 -0.8
4,346,690 + Psyr_3659 0.64 +0.4
4,346,690 + Psyr_3659 0.64 -0.6
4,346,691 - Psyr_3659 0.64 -2.2
4,346,691 - Psyr_3659 0.64 +2.0
4,346,718 + Psyr_3659 0.73 +1.1
4,346,718 + Psyr_3659 0.73 -0.5
4,346,718 + Psyr_3659 0.73 +0.1
4,346,718 + Psyr_3659 0.73 +0.9
4,346,718 + Psyr_3659 0.73 -0.0
4,346,719 - Psyr_3659 0.73 +2.6
4,346,719 - Psyr_3659 0.73 -0.6
4,346,719 - Psyr_3659 0.73 +1.0
4,346,719 - Psyr_3659 0.73 -1.8
4,346,734 + Psyr_3659 0.79 -0.7
4,346,734 + Psyr_3659 0.79 -1.4
4,346,734 + Psyr_3659 0.79 -0.2
4,346,735 - Psyr_3659 0.79 -0.1
4,346,735 - Psyr_3659 0.79 +1.0
4,346,735 - Psyr_3659 0.79 +0.9
4,346,994 - Psyr_3660 0.34 -1.2
4,347,041 + Psyr_3660 0.43 +1.9
4,347,041 + Psyr_3660 0.43 -0.2
4,347,041 + Psyr_3660 0.43 +2.6
4,347,042 - Psyr_3660 0.44 +0.9
4,347,042 - Psyr_3660 0.44 +2.0
4,347,042 - Psyr_3660 0.44 +0.2
4,347,116 + Psyr_3660 0.58 -0.6
4,347,117 - Psyr_3660 0.58 +0.5
4,347,117 - Psyr_3660 0.58 -0.0
4,347,350 + +1.0
4,347,354 + +1.2
4,347,354 + -0.5
4,347,355 - -1.5
4,347,355 - +1.5
4,347,395 + +2.6
4,347,396 - -0.1
4,347,466 + +0.6
4,347,467 - -0.6
4,347,477 - +0.9
4,347,477 - +1.4
4,347,493 + -0.6
4,347,493 + +0.4
4,347,493 + -0.9
4,347,494 - +0.2
4,347,494 - -1.4
4,347,494 - +0.1
4,347,501 + +0.6
4,347,502 - +1.8
4,347,502 - -0.6
4,347,502 - +0.4
4,347,563 + +1.6

Or see this region's nucleotide sequence