Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3658

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3656 and Psyr_3657 overlap by 8 nucleotidesPsyr_3657 and Psyr_3658 are separated by 3 nucleotidesPsyr_3658 and Psyr_3659 are separated by 173 nucleotidesPsyr_3659 and Psyr_3660 are separated by 15 nucleotides Psyr_3656: Psyr_3656 - ABC transporter, transmembrane region:ABC transporter, at 4,342,921 to 4,344,747 _3656 Psyr_3657: Psyr_3657 - DSBA oxidoreductase, at 4,344,740 to 4,345,372 _3657 Psyr_3658: Psyr_3658 - Rhodanese-like protein, at 4,345,376 to 4,346,329 _3658 Psyr_3659: Psyr_3659 - transcriptional regulator, BolA protein family, at 4,346,503 to 4,346,796 _3659 Psyr_3660: Psyr_3660 - conserved hypothetical protein, at 4,346,812 to 4,347,339 _3660 Position (kb) 4345 4346 4347Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4344.480 kb on - strand, within Psyr_3656at 4344.509 kb on - strand, within Psyr_3656at 4344.509 kb on - strand, within Psyr_3656at 4345.020 kb on + strand, within Psyr_3657at 4345.020 kb on + strand, within Psyr_3657at 4345.020 kb on + strand, within Psyr_3657at 4345.021 kb on - strand, within Psyr_3657at 4345.021 kb on - strand, within Psyr_3657at 4345.108 kb on + strand, within Psyr_3657at 4345.109 kb on - strand, within Psyr_3657at 4345.117 kb on - strand, within Psyr_3657at 4345.200 kb on + strand, within Psyr_3657at 4345.201 kb on - strand, within Psyr_3657at 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.398 kb on + strandat 4345.399 kb on - strandat 4345.399 kb on - strandat 4345.399 kb on - strandat 4345.530 kb on + strand, within Psyr_3658at 4345.530 kb on + strand, within Psyr_3658at 4345.530 kb on + strand, within Psyr_3658at 4345.530 kb on + strand, within Psyr_3658at 4345.590 kb on + strand, within Psyr_3658at 4345.591 kb on - strand, within Psyr_3658at 4345.591 kb on - strand, within Psyr_3658at 4345.689 kb on + strand, within Psyr_3658at 4345.689 kb on + strand, within Psyr_3658at 4345.716 kb on + strand, within Psyr_3658at 4345.716 kb on + strand, within Psyr_3658at 4345.716 kb on + strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.746 kb on + strand, within Psyr_3658at 4345.746 kb on + strand, within Psyr_3658at 4345.746 kb on + strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.834 kb on - strand, within Psyr_3658at 4345.906 kb on - strand, within Psyr_3658at 4345.906 kb on - strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.981 kb on + strand, within Psyr_3658at 4345.981 kb on + strand, within Psyr_3658at 4346.059 kb on - strand, within Psyr_3658at 4346.283 kb on + strandat 4346.283 kb on + strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.423 kb on + strandat 4346.423 kb on + strandat 4346.490 kb on + strandat 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.571 kb on - strand, within Psyr_3659at 4346.571 kb on - strand, within Psyr_3659at 4346.624 kb on + strand, within Psyr_3659at 4346.625 kb on - strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.691 kb on - strand, within Psyr_3659at 4346.691 kb on - strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.994 kb on - strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.116 kb on + strand, within Psyr_3660at 4347.117 kb on - strand, within Psyr_3660at 4347.117 kb on - strand, within Psyr_3660

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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4,344,480 - Psyr_3656 0.85 -0.3
4,344,509 - Psyr_3656 0.87 -0.1
4,344,509 - Psyr_3656 0.87 -0.8
4,345,020 + Psyr_3657 0.44 +0.3
4,345,020 + Psyr_3657 0.44 +0.8
4,345,020 + Psyr_3657 0.44 +0.5
4,345,021 - Psyr_3657 0.44 -0.6
4,345,021 - Psyr_3657 0.44 -1.9
4,345,108 + Psyr_3657 0.58 -0.4
4,345,109 - Psyr_3657 0.58 -1.8
4,345,117 - Psyr_3657 0.60 -0.7
4,345,200 + Psyr_3657 0.73 +0.6
4,345,201 - Psyr_3657 0.73 -0.2
4,345,353 + -0.8
4,345,353 + +1.0
4,345,353 + -0.6
4,345,353 + -1.7
4,345,353 + -0.2
4,345,354 - -0.8
4,345,354 - +1.0
4,345,354 - -1.4
4,345,354 - -0.5
4,345,354 - +2.0
4,345,354 - +1.4
4,345,398 + -0.3
4,345,399 - +1.7
4,345,399 - +0.9
4,345,399 - -0.7
4,345,530 + Psyr_3658 0.16 +0.8
4,345,530 + Psyr_3658 0.16 -0.8
4,345,530 + Psyr_3658 0.16 -1.9
4,345,530 + Psyr_3658 0.16 -0.7
4,345,590 + Psyr_3658 0.22 +0.4
4,345,591 - Psyr_3658 0.23 +0.0
4,345,591 - Psyr_3658 0.23 -0.6
4,345,689 + Psyr_3658 0.33 -1.3
4,345,689 + Psyr_3658 0.33 +0.8
4,345,716 + Psyr_3658 0.36 -0.5
4,345,716 + Psyr_3658 0.36 -2.0
4,345,716 + Psyr_3658 0.36 -0.2
4,345,717 - Psyr_3658 0.36 +0.3
4,345,717 - Psyr_3658 0.36 -2.3
4,345,717 - Psyr_3658 0.36 +0.6
4,345,717 - Psyr_3658 0.36 +1.8
4,345,717 - Psyr_3658 0.36 +0.6
4,345,717 - Psyr_3658 0.36 -0.5
4,345,746 + Psyr_3658 0.39 +0.8
4,345,746 + Psyr_3658 0.39 +1.0
4,345,746 + Psyr_3658 0.39 -0.6
4,345,747 - Psyr_3658 0.39 +0.0
4,345,747 - Psyr_3658 0.39 -1.3
4,345,747 - Psyr_3658 0.39 -0.7
4,345,747 - Psyr_3658 0.39 +1.2
4,345,833 + Psyr_3658 0.48 +1.3
4,345,833 + Psyr_3658 0.48 +1.0
4,345,833 + Psyr_3658 0.48 -1.5
4,345,833 + Psyr_3658 0.48 -0.2
4,345,834 - Psyr_3658 0.48 -1.0
4,345,906 - Psyr_3658 0.56 -0.9
4,345,906 - Psyr_3658 0.56 +0.7
4,345,977 + Psyr_3658 0.63 -3.0
4,345,977 + Psyr_3658 0.63 -0.6
4,345,977 + Psyr_3658 0.63 -0.9
4,345,977 + Psyr_3658 0.63 -1.3
4,345,978 - Psyr_3658 0.63 -1.9
4,345,978 - Psyr_3658 0.63 +3.8
4,345,978 - Psyr_3658 0.63 -0.5
4,345,978 - Psyr_3658 0.63 -0.6
4,345,978 - Psyr_3658 0.63 +0.3
4,345,981 + Psyr_3658 0.63 +0.0
4,345,981 + Psyr_3658 0.63 -2.6
4,346,059 - Psyr_3658 0.72 +0.3
4,346,283 + +2.2
4,346,283 + -0.6
4,346,284 - -1.1
4,346,284 - +1.0
4,346,284 - +0.1
4,346,284 - +1.0
4,346,331 + +0.8
4,346,331 + -1.5
4,346,331 + +0.4
4,346,331 + -1.4
4,346,331 + -0.3
4,346,331 + -3.2
4,346,331 + +0.7
4,346,331 + +0.6
4,346,331 + +1.0
4,346,331 + -0.3
4,346,331 + +2.6
4,346,331 + -0.6
4,346,331 + +1.7
4,346,331 + +0.6
4,346,331 + -1.9
4,346,331 + -1.7
4,346,331 + -2.2
4,346,331 + +1.3
4,346,331 + +0.9
4,346,331 + +3.0
4,346,332 - -1.6
4,346,332 - -0.8
4,346,332 - +1.3
4,346,332 - +0.6
4,346,332 - -0.5
4,346,332 - -1.6
4,346,332 - -2.1
4,346,332 - -2.4
4,346,332 - +1.0
4,346,332 - -1.2
4,346,332 - +1.0
4,346,332 - +1.8
4,346,332 - -2.1
4,346,332 - -1.4
4,346,332 - +1.3
4,346,332 - +0.3
4,346,332 - -2.2
4,346,332 - +2.4
4,346,423 + +0.0
4,346,423 + +1.0
4,346,490 + +0.2
4,346,570 + Psyr_3659 0.23 +0.3
4,346,570 + Psyr_3659 0.23 +0.0
4,346,570 + Psyr_3659 0.23 +0.0
4,346,570 + Psyr_3659 0.23 +1.9
4,346,570 + Psyr_3659 0.23 -2.0
4,346,570 + Psyr_3659 0.23 -2.4
4,346,570 + Psyr_3659 0.23 +0.0
4,346,570 + Psyr_3659 0.23 +3.3
4,346,571 - Psyr_3659 0.23 +0.7
4,346,571 - Psyr_3659 0.23 +0.0
4,346,624 + Psyr_3659 0.41 +0.5
4,346,625 - Psyr_3659 0.41 +1.5
4,346,690 + Psyr_3659 0.64 +1.5
4,346,690 + Psyr_3659 0.64 -0.1
4,346,690 + Psyr_3659 0.64 -0.6
4,346,690 + Psyr_3659 0.64 -0.8
4,346,690 + Psyr_3659 0.64 +0.4
4,346,690 + Psyr_3659 0.64 -0.6
4,346,691 - Psyr_3659 0.64 -2.2
4,346,691 - Psyr_3659 0.64 +2.0
4,346,718 + Psyr_3659 0.73 +1.1
4,346,718 + Psyr_3659 0.73 -0.5
4,346,718 + Psyr_3659 0.73 +0.1
4,346,718 + Psyr_3659 0.73 +0.9
4,346,718 + Psyr_3659 0.73 -0.0
4,346,719 - Psyr_3659 0.73 +2.6
4,346,719 - Psyr_3659 0.73 -0.6
4,346,719 - Psyr_3659 0.73 +1.0
4,346,719 - Psyr_3659 0.73 -1.8
4,346,734 + Psyr_3659 0.79 -0.7
4,346,734 + Psyr_3659 0.79 -1.4
4,346,734 + Psyr_3659 0.79 -0.2
4,346,735 - Psyr_3659 0.79 -0.1
4,346,735 - Psyr_3659 0.79 +1.0
4,346,735 - Psyr_3659 0.79 +0.9
4,346,994 - Psyr_3660 0.34 -1.2
4,347,041 + Psyr_3660 0.43 +1.9
4,347,041 + Psyr_3660 0.43 -0.2
4,347,041 + Psyr_3660 0.43 +2.6
4,347,042 - Psyr_3660 0.44 +0.9
4,347,042 - Psyr_3660 0.44 +2.0
4,347,042 - Psyr_3660 0.44 +0.2
4,347,116 + Psyr_3660 0.58 -0.6
4,347,117 - Psyr_3660 0.58 +0.5
4,347,117 - Psyr_3660 0.58 -0.0

Or see this region's nucleotide sequence