Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3558 and Psyr_3559 are separated by 105 nucleotides Psyr_3559 and Psyr_3560 are separated by 11 nucleotides Psyr_3560 and Psyr_3561 are separated by 61 nucleotides
Psyr_3558: Psyr_3558 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,239,380 to 4,239,892
_3558
Psyr_3559: Psyr_3559 - succinylglutamate desuccinylase, at 4,239,998 to 4,241,005
_3559
Psyr_3560: Psyr_3560 - conserved hypothetical protein, at 4,241,017 to 4,241,304
_3560
Psyr_3561: Psyr_3561 - succinylarginine dihydrolase, at 4,241,366 to 4,242,712
_3561
Position (kb) 4239
4240
4241
4242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4239.012 kb on + strand at 4239.012 kb on + strand at 4239.012 kb on + strand at 4239.013 kb on - strand at 4239.013 kb on - strand at 4239.013 kb on - strand at 4239.014 kb on + strand at 4239.015 kb on - strand at 4239.015 kb on - strand at 4239.015 kb on - strand at 4239.050 kb on + strand at 4239.050 kb on + strand at 4239.050 kb on + strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.051 kb on - strand at 4239.077 kb on + strand at 4239.077 kb on + strand at 4239.078 kb on - strand at 4239.145 kb on + strand at 4239.182 kb on + strand at 4239.229 kb on + strand at 4239.229 kb on + strand at 4239.277 kb on - strand at 4239.277 kb on - strand at 4239.284 kb on - strand at 4239.316 kb on + strand at 4239.481 kb on + strand, within Psyr_3558 at 4239.647 kb on + strand, within Psyr_3558 at 4239.647 kb on + strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.648 kb on - strand, within Psyr_3558 at 4239.907 kb on - strand at 4239.927 kb on - strand at 4239.927 kb on - strand at 4240.025 kb on + strand at 4240.140 kb on + strand, within Psyr_3559 at 4240.395 kb on + strand, within Psyr_3559 at 4240.395 kb on + strand, within Psyr_3559 at 4240.395 kb on + strand, within Psyr_3559 at 4240.395 kb on + strand, within Psyr_3559 at 4240.396 kb on - strand, within Psyr_3559 at 4240.396 kb on - strand, within Psyr_3559 at 4240.396 kb on - strand, within Psyr_3559 at 4240.396 kb on - strand, within Psyr_3559 at 4240.396 kb on - strand, within Psyr_3559 at 4240.402 kb on - strand, within Psyr_3559 at 4240.563 kb on + strand, within Psyr_3559 at 4240.563 kb on + strand, within Psyr_3559 at 4240.747 kb on + strand, within Psyr_3559 at 4240.747 kb on + strand, within Psyr_3559 at 4240.747 kb on + strand, within Psyr_3559 at 4240.747 kb on + strand, within Psyr_3559 at 4240.748 kb on - strand, within Psyr_3559 at 4240.748 kb on - strand, within Psyr_3559 at 4240.748 kb on - strand, within Psyr_3559 at 4240.748 kb on - strand, within Psyr_3559 at 4241.138 kb on + strand, within Psyr_3560 at 4241.304 kb on + strand at 4241.306 kb on + strand at 4241.307 kb on - strand at 4241.312 kb on + strand at 4241.330 kb on + strand at 4241.330 kb on + strand at 4241.330 kb on + strand at 4241.331 kb on - strand at 4241.331 kb on - strand at 4241.331 kb on - strand at 4241.331 kb on - strand at 4241.523 kb on + strand, within Psyr_3561 at 4241.694 kb on + strand, within Psyr_3561 at 4241.694 kb on + strand, within Psyr_3561 at 4241.787 kb on + strand, within Psyr_3561 at 4241.787 kb on + strand, within Psyr_3561 at 4241.922 kb on + strand, within Psyr_3561 at 4241.922 kb on + strand, within Psyr_3561 at 4241.969 kb on + strand, within Psyr_3561 at 4241.969 kb on + strand, within Psyr_3561
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 4,239,012 + +3.0 4,239,012 + -0.6 4,239,012 + -1.3 4,239,013 - -0.2 4,239,013 - -0.2 4,239,013 - +0.7 4,239,014 + +0.5 4,239,015 - -0.0 4,239,015 - +1.5 4,239,015 - -0.9 4,239,050 + +1.0 4,239,050 + +0.9 4,239,050 + +1.0 4,239,051 - +0.9 4,239,051 - -1.7 4,239,051 - +2.0 4,239,051 - -1.0 4,239,051 - -0.3 4,239,051 - -2.9 4,239,077 + +0.3 4,239,077 + +0.1 4,239,078 - +0.0 4,239,145 + -0.8 4,239,182 + +0.0 4,239,229 + -0.4 4,239,229 + -1.8 4,239,277 - -0.1 4,239,277 - -2.5 4,239,284 - -1.0 4,239,316 + +1.0 4,239,481 + Psyr_3558 0.20 +0.5 4,239,647 + Psyr_3558 0.52 -0.7 4,239,647 + Psyr_3558 0.52 +0.4 4,239,648 - Psyr_3558 0.52 +1.3 4,239,648 - Psyr_3558 0.52 -0.1 4,239,648 - Psyr_3558 0.52 -0.6 4,239,648 - Psyr_3558 0.52 -1.0 4,239,648 - Psyr_3558 0.52 -0.2 4,239,907 - -1.3 4,239,927 - -2.4 4,239,927 - +1.5 4,240,025 + -0.6 4,240,140 + Psyr_3559 0.14 +0.8 4,240,395 + Psyr_3559 0.39 +1.0 4,240,395 + Psyr_3559 0.39 +1.3 4,240,395 + Psyr_3559 0.39 +0.8 4,240,395 + Psyr_3559 0.39 -0.6 4,240,396 - Psyr_3559 0.39 -0.2 4,240,396 - Psyr_3559 0.39 +1.2 4,240,396 - Psyr_3559 0.39 -0.5 4,240,396 - Psyr_3559 0.39 +0.8 4,240,396 - Psyr_3559 0.39 +2.8 4,240,402 - Psyr_3559 0.40 +3.6 4,240,563 + Psyr_3559 0.56 -0.4 4,240,563 + Psyr_3559 0.56 +3.0 4,240,747 + Psyr_3559 0.74 +0.2 4,240,747 + Psyr_3559 0.74 +5.3 4,240,747 + Psyr_3559 0.74 +0.4 4,240,747 + Psyr_3559 0.74 +1.0 4,240,748 - Psyr_3559 0.74 -1.6 4,240,748 - Psyr_3559 0.74 +0.4 4,240,748 - Psyr_3559 0.74 +0.0 4,240,748 - Psyr_3559 0.74 +0.9 4,241,138 + Psyr_3560 0.42 -1.0 4,241,304 + -0.3 4,241,306 + -2.6 4,241,307 - +0.0 4,241,312 + -0.7 4,241,330 + +0.8 4,241,330 + +0.8 4,241,330 + -1.1 4,241,331 - -0.3 4,241,331 - -0.1 4,241,331 - +1.4 4,241,331 - +0.6 4,241,523 + Psyr_3561 0.12 +0.1 4,241,694 + Psyr_3561 0.24 +0.4 4,241,694 + Psyr_3561 0.24 +0.6 4,241,787 + Psyr_3561 0.31 +0.5 4,241,787 + Psyr_3561 0.31 +2.5 4,241,922 + Psyr_3561 0.41 +3.6 4,241,922 + Psyr_3561 0.41 -0.7 4,241,969 + Psyr_3561 0.45 +0.2 4,241,969 + Psyr_3561 0.45 +1.3
Or see this region's nucleotide sequence