Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3536

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3534 and Psyr_3535 are separated by 117 nucleotidesPsyr_3535 and Psyr_3536 overlap by 31 nucleotidesPsyr_3536 and Psyr_3537 are separated by 217 nucleotides Psyr_3534: Psyr_3534 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 4,211,791 to 4,213,680 _3534 Psyr_3535: Psyr_3535 - conserved hypothetical protein, at 4,213,798 to 4,214,592 _3535 Psyr_3536: Psyr_3536 - hypothetical protein, at 4,214,562 to 4,214,981 _3536 Psyr_3537: Psyr_3537 - hydrolase, at 4,215,199 to 4,216,062 _3537 Position (kb) 4214 4215Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4213.570 kb on - strandat 4213.570 kb on - strandat 4213.589 kb on + strandat 4213.590 kb on - strandat 4213.729 kb on + strandat 4213.729 kb on + strandat 4213.730 kb on - strandat 4213.730 kb on - strandat 4213.730 kb on - strandat 4213.730 kb on - strandat 4213.730 kb on - strandat 4213.730 kb on - strandat 4213.730 kb on - strandat 4213.730 kb on - strandat 4213.733 kb on + strandat 4213.768 kb on + strandat 4213.774 kb on + strandat 4213.872 kb on + strandat 4213.872 kb on + strandat 4213.873 kb on - strandat 4213.877 kb on + strandat 4213.877 kb on + strandat 4213.878 kb on - strand, within Psyr_3535at 4213.878 kb on - strand, within Psyr_3535at 4213.878 kb on - strand, within Psyr_3535at 4213.878 kb on - strand, within Psyr_3535at 4213.878 kb on - strand, within Psyr_3535at 4213.878 kb on - strand, within Psyr_3535at 4213.878 kb on - strand, within Psyr_3535at 4213.878 kb on - strand, within Psyr_3535at 4213.906 kb on + strand, within Psyr_3535at 4213.906 kb on + strand, within Psyr_3535at 4213.907 kb on - strand, within Psyr_3535at 4213.907 kb on - strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.933 kb on + strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.934 kb on - strand, within Psyr_3535at 4213.987 kb on + strand, within Psyr_3535at 4213.987 kb on + strand, within Psyr_3535at 4213.987 kb on + strand, within Psyr_3535at 4214.077 kb on + strand, within Psyr_3535at 4214.077 kb on + strand, within Psyr_3535at 4214.230 kb on + strand, within Psyr_3535at 4214.230 kb on + strand, within Psyr_3535at 4214.230 kb on + strand, within Psyr_3535at 4214.231 kb on - strand, within Psyr_3535at 4214.231 kb on - strand, within Psyr_3535at 4214.231 kb on - strand, within Psyr_3535at 4214.476 kb on + strand, within Psyr_3535at 4214.477 kb on - strand, within Psyr_3535at 4214.477 kb on - strand, within Psyr_3535at 4214.525 kb on + strandat 4214.525 kb on + strandat 4214.525 kb on + strandat 4214.525 kb on + strandat 4214.563 kb on + strandat 4214.564 kb on - strandat 4214.574 kb on + strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.646 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.675 kb on - strand, within Psyr_3536at 4214.710 kb on - strand, within Psyr_3536at 4214.755 kb on + strand, within Psyr_3536at 4214.756 kb on - strand, within Psyr_3536at 4214.756 kb on - strand, within Psyr_3536at 4214.756 kb on - strand, within Psyr_3536at 4214.834 kb on + strand, within Psyr_3536at 4214.835 kb on - strand, within Psyr_3536at 4214.871 kb on + strand, within Psyr_3536at 4214.872 kb on - strand, within Psyr_3536at 4214.872 kb on - strand, within Psyr_3536at 4214.972 kb on + strandat 4215.126 kb on + strandat 4215.127 kb on - strandat 4215.127 kb on - strandat 4215.149 kb on + strandat 4215.159 kb on - strandat 4215.239 kb on - strandat 4215.285 kb on + strandat 4215.311 kb on - strand, within Psyr_3537at 4215.417 kb on - strand, within Psyr_3537at 4215.472 kb on + strand, within Psyr_3537at 4215.472 kb on + strand, within Psyr_3537at 4215.472 kb on + strand, within Psyr_3537at 4215.473 kb on - strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.512 kb on - strand, within Psyr_3537at 4215.522 kb on + strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.788 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.819 kb on - strand, within Psyr_3537at 4215.819 kb on - strand, within Psyr_3537at 4215.819 kb on - strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.971 kb on + strand, within Psyr_3537

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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4,213,570 - +0.5
4,213,570 - +0.1
4,213,589 + +0.2
4,213,590 - +2.6
4,213,729 + +1.1
4,213,729 + -1.6
4,213,730 - +0.3
4,213,730 - -0.9
4,213,730 - +0.5
4,213,730 - +1.0
4,213,730 - +0.7
4,213,730 - -0.8
4,213,730 - +0.5
4,213,730 - +0.6
4,213,733 + -0.2
4,213,768 + +0.2
4,213,774 + +2.0
4,213,872 + +0.1
4,213,872 + +0.2
4,213,873 - -0.2
4,213,877 + +0.7
4,213,877 + +2.6
4,213,878 - Psyr_3535 0.10 -0.6
4,213,878 - Psyr_3535 0.10 -2.0
4,213,878 - Psyr_3535 0.10 +0.2
4,213,878 - Psyr_3535 0.10 +0.2
4,213,878 - Psyr_3535 0.10 +1.4
4,213,878 - Psyr_3535 0.10 +1.9
4,213,878 - Psyr_3535 0.10 -1.9
4,213,878 - Psyr_3535 0.10 +0.7
4,213,906 + Psyr_3535 0.14 -1.3
4,213,906 + Psyr_3535 0.14 +1.0
4,213,907 - Psyr_3535 0.14 +0.1
4,213,907 - Psyr_3535 0.14 +0.2
4,213,933 + Psyr_3535 0.17 -1.0
4,213,933 + Psyr_3535 0.17 -0.2
4,213,933 + Psyr_3535 0.17 -1.0
4,213,933 + Psyr_3535 0.17 -0.5
4,213,933 + Psyr_3535 0.17 -0.1
4,213,933 + Psyr_3535 0.17 +1.9
4,213,933 + Psyr_3535 0.17 +0.6
4,213,933 + Psyr_3535 0.17 +0.5
4,213,934 - Psyr_3535 0.17 +0.8
4,213,934 - Psyr_3535 0.17 +0.2
4,213,934 - Psyr_3535 0.17 -0.1
4,213,934 - Psyr_3535 0.17 +1.1
4,213,934 - Psyr_3535 0.17 +0.4
4,213,934 - Psyr_3535 0.17 +0.0
4,213,934 - Psyr_3535 0.17 +0.1
4,213,934 - Psyr_3535 0.17 +0.9
4,213,934 - Psyr_3535 0.17 +0.8
4,213,987 + Psyr_3535 0.24 +0.5
4,213,987 + Psyr_3535 0.24 +0.9
4,213,987 + Psyr_3535 0.24 -0.5
4,214,077 + Psyr_3535 0.35 -1.1
4,214,077 + Psyr_3535 0.35 -1.0
4,214,230 + Psyr_3535 0.54 -0.2
4,214,230 + Psyr_3535 0.54 +0.9
4,214,230 + Psyr_3535 0.54 -1.0
4,214,231 - Psyr_3535 0.54 +1.9
4,214,231 - Psyr_3535 0.54 -1.4
4,214,231 - Psyr_3535 0.54 +0.3
4,214,476 + Psyr_3535 0.85 +0.3
4,214,477 - Psyr_3535 0.85 +1.1
4,214,477 - Psyr_3535 0.85 -2.2
4,214,525 + -2.2
4,214,525 + +0.8
4,214,525 + +0.3
4,214,525 + +0.7
4,214,563 + -0.4
4,214,564 - +0.1
4,214,574 + +0.3
4,214,575 - -1.7
4,214,575 - +0.4
4,214,575 - +0.4
4,214,575 - +0.6
4,214,575 - +0.7
4,214,646 + Psyr_3536 0.20 -0.3
4,214,674 + Psyr_3536 0.27 +0.6
4,214,674 + Psyr_3536 0.27 -0.8
4,214,674 + Psyr_3536 0.27 +1.3
4,214,674 + Psyr_3536 0.27 -0.1
4,214,675 - Psyr_3536 0.27 +2.6
4,214,710 - Psyr_3536 0.35 +0.8
4,214,755 + Psyr_3536 0.46 -0.3
4,214,756 - Psyr_3536 0.46 +1.4
4,214,756 - Psyr_3536 0.46 +1.0
4,214,756 - Psyr_3536 0.46 +0.4
4,214,834 + Psyr_3536 0.65 -0.5
4,214,835 - Psyr_3536 0.65 +0.8
4,214,871 + Psyr_3536 0.74 -0.6
4,214,872 - Psyr_3536 0.74 -0.7
4,214,872 - Psyr_3536 0.74 +1.2
4,214,972 + +1.2
4,215,126 + -0.2
4,215,127 - +0.9
4,215,127 - -0.3
4,215,149 + +1.0
4,215,159 - -1.8
4,215,239 - +0.5
4,215,285 + +1.4
4,215,311 - Psyr_3537 0.13 -0.1
4,215,417 - Psyr_3537 0.25 -0.1
4,215,472 + Psyr_3537 0.32 +1.9
4,215,472 + Psyr_3537 0.32 +1.2
4,215,472 + Psyr_3537 0.32 +0.0
4,215,473 - Psyr_3537 0.32 +0.0
4,215,511 + Psyr_3537 0.36 -1.6
4,215,511 + Psyr_3537 0.36 +0.6
4,215,511 + Psyr_3537 0.36 +0.2
4,215,511 + Psyr_3537 0.36 -1.0
4,215,511 + Psyr_3537 0.36 +0.3
4,215,512 - Psyr_3537 0.36 +0.9
4,215,522 + Psyr_3537 0.37 +1.6
4,215,523 - Psyr_3537 0.38 -0.2
4,215,523 - Psyr_3537 0.38 -1.5
4,215,523 - Psyr_3537 0.38 +1.2
4,215,523 - Psyr_3537 0.38 +3.0
4,215,681 + Psyr_3537 0.56 +0.7
4,215,681 + Psyr_3537 0.56 +1.6
4,215,681 + Psyr_3537 0.56 +0.3
4,215,681 + Psyr_3537 0.56 +3.3
4,215,682 - Psyr_3537 0.56 +1.0
4,215,682 - Psyr_3537 0.56 +0.4
4,215,682 - Psyr_3537 0.56 -2.3
4,215,682 - Psyr_3537 0.56 +0.0
4,215,788 + Psyr_3537 0.68 -1.4
4,215,818 + Psyr_3537 0.72 -0.2
4,215,818 + Psyr_3537 0.72 -0.3
4,215,818 + Psyr_3537 0.72 +0.0
4,215,818 + Psyr_3537 0.72 +0.0
4,215,819 - Psyr_3537 0.72 +0.4
4,215,819 - Psyr_3537 0.72 +0.2
4,215,819 - Psyr_3537 0.72 -3.2
4,215,848 + Psyr_3537 0.75 +2.6
4,215,848 + Psyr_3537 0.75 +1.6
4,215,848 + Psyr_3537 0.75 -0.1
4,215,848 + Psyr_3537 0.75 +1.5
4,215,848 + Psyr_3537 0.75 +2.0
4,215,848 + Psyr_3537 0.75 -0.3
4,215,848 + Psyr_3537 0.75 +2.5
4,215,848 + Psyr_3537 0.75 -0.5
4,215,848 + Psyr_3537 0.75 +0.6
4,215,848 + Psyr_3537 0.75 +2.5
4,215,848 + Psyr_3537 0.75 -0.6
4,215,848 + Psyr_3537 0.75 -1.6
4,215,848 + Psyr_3537 0.75 +0.5
4,215,848 + Psyr_3537 0.75 -1.0
4,215,848 + Psyr_3537 0.75 -0.4
4,215,848 + Psyr_3537 0.75 +0.7
4,215,849 - Psyr_3537 0.75 +0.0
4,215,849 - Psyr_3537 0.75 +1.0
4,215,849 - Psyr_3537 0.75 -0.1
4,215,849 - Psyr_3537 0.75 -0.1
4,215,849 - Psyr_3537 0.75 +0.3
4,215,849 - Psyr_3537 0.75 +0.7
4,215,849 - Psyr_3537 0.75 -2.1
4,215,849 - Psyr_3537 0.75 +2.0
4,215,849 - Psyr_3537 0.75 +2.4
4,215,849 - Psyr_3537 0.75 +1.4
4,215,849 - Psyr_3537 0.75 +0.6
4,215,849 - Psyr_3537 0.75 +1.0
4,215,971 + Psyr_3537 0.89 -2.2

Or see this region's nucleotide sequence