Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3287 and Psyr_3288 are separated by 113 nucleotides Psyr_3288 and Psyr_3289 are separated by 102 nucleotides
Psyr_3287: Psyr_3287 - DNA topoisomerase I, at 3,932,531 to 3,935,143
_3287
Psyr_3288: Psyr_3288 - conserved hypothetical protein, at 3,935,257 to 3,935,493
_3288
Psyr_3289: Psyr_3289 - 3-ketoacyl-CoA thiolase, at 3,935,596 to 3,936,771
_3289
Position (kb) 3935
3936 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3935.167 kb on - strand at 3935.192 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.210 kb on - strand at 3935.210 kb on - strand at 3935.210 kb on - strand at 3935.210 kb on - strand at 3935.447 kb on + strand, within Psyr_3288 at 3935.462 kb on + strand, within Psyr_3288 at 3935.462 kb on + strand, within Psyr_3288 at 3935.462 kb on + strand, within Psyr_3288 at 3935.463 kb on - strand, within Psyr_3288 at 3935.471 kb on + strand at 3935.509 kb on + strand at 3935.509 kb on + strand at 3935.510 kb on - strand at 3935.510 kb on - strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.865 kb on + strand, within Psyr_3289 at 3935.866 kb on - strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 3,935,167 - -0.2 3,935,192 - +0.9 3,935,204 - +0.6 3,935,204 - -0.8 3,935,204 - +1.0 3,935,204 - -1.1 3,935,204 - +0.7 3,935,204 - -1.9 3,935,204 - +0.6 3,935,206 - +0.0 3,935,206 - +0.7 3,935,206 - +0.9 3,935,206 - -0.1 3,935,206 - -1.7 3,935,206 - -0.9 3,935,206 - -0.2 3,935,206 - -0.2 3,935,206 - -1.3 3,935,206 - +1.2 3,935,206 - -0.5 3,935,206 - +1.0 3,935,208 - +0.0 3,935,208 - +1.0 3,935,208 - +0.8 3,935,208 - -0.6 3,935,208 - +0.1 3,935,208 - -0.3 3,935,208 - -0.6 3,935,208 - -0.7 3,935,208 - +1.0 3,935,208 - +1.4 3,935,208 - +0.3 3,935,208 - +2.0 3,935,208 - +0.2 3,935,208 - -1.2 3,935,208 - -1.5 3,935,208 - -0.4 3,935,208 - -0.4 3,935,208 - -0.5 3,935,208 - -1.5 3,935,208 - +0.0 3,935,210 - +0.3 3,935,210 - +1.0 3,935,210 - -0.1 3,935,210 - -0.1 3,935,447 + Psyr_3288 0.80 -0.7 3,935,462 + Psyr_3288 0.86 -1.5 3,935,462 + Psyr_3288 0.86 -1.7 3,935,462 + Psyr_3288 0.86 +0.6 3,935,463 - Psyr_3288 0.87 +3.6 3,935,471 + -0.1 3,935,509 + +0.3 3,935,509 + -0.2 3,935,510 - -0.4 3,935,510 - +1.5 3,935,640 + -0.1 3,935,640 + -0.8 3,935,640 + +0.0 3,935,640 + +2.6 3,935,640 + -0.2 3,935,865 + Psyr_3289 0.23 -1.6 3,935,866 - Psyr_3289 0.23 -1.7 3,936,061 + Psyr_3289 0.40 -1.4 3,936,061 + Psyr_3289 0.40 +0.0 3,936,061 + Psyr_3289 0.40 -1.3
Or see this region's nucleotide sequence