Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3202
Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | KB with Dimethyl Sulfoxide 1.25 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 3,832,513 | + | +1.0 | |||
| 3,832,557 | + | +0.8 | |||
| 3,832,557 | + | -0.3 | |||
| 3,832,557 | + | +2.0 | |||
| 3,833,124 | + | Psyr_3202 | 0.17 | -1.2 | |
| 3,833,125 | - | Psyr_3202 | 0.17 | -2.7 | |
| 3,833,190 | - | Psyr_3202 | 0.20 | +1.0 | |
| 3,833,266 | - | Psyr_3202 | 0.23 | +1.0 | |
| 3,833,619 | - | Psyr_3202 | 0.36 | +2.6 | |
| 3,833,655 | - | Psyr_3202 | 0.37 | -1.3 | |
| 3,833,982 | + | Psyr_3202 | 0.49 | -1.5 | |
| 3,835,158 | - | -0.5 | |||
| 3,835,158 | - | -0.6 | |||
| 3,835,745 | + | Psyr_3203 | 0.38 | +2.6 | |
| 3,836,093 | - | Psyr_3203 | 0.72 | -1.8 |
Or see this region's nucleotide sequence