Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2894 and Psyr_RNA45 are separated by 91 nucleotides Psyr_RNA45 and Psyr_2895 are separated by 66 nucleotides Psyr_2895 and Psyr_2896 are separated by 32 nucleotides Psyr_2896 and Psyr_2897 are separated by 2 nucleotides Psyr_2897 and Psyr_2898 are separated by 145 nucleotides
Psyr_2894: Psyr_2894 - conserved hypothetical protein, at 3,473,200 to 3,473,658
_2894
Psyr_RNA45: Psyr_RNA45 - tRNA-Gly, at 3,473,750 to 3,473,825
_RNA45
Psyr_2895: Psyr_2895 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,473,892 to 3,474,452
_2895
Psyr_2896: Psyr_2896 - Excinuclease ABC subunit C, at 3,474,485 to 3,476,308
_2896
Psyr_2897: Psyr_2897 - regulatory protein, LuxR:Response regulator receiver, at 3,476,311 to 3,476,979
_2897
Psyr_2898: Psyr_2898 - Helix-turn-helix motif protein, at 3,477,125 to 3,477,487
_2898
Position (kb)
3474
3475
3476
3477 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3473.545 kb on + strand, within Psyr_2894 at 3473.546 kb on - strand, within Psyr_2894 at 3473.656 kb on + strand at 3473.656 kb on + strand at 3473.657 kb on - strand at 3473.657 kb on - strand at 3474.508 kb on - strand at 3474.508 kb on - strand at 3474.733 kb on + strand, within Psyr_2896 at 3474.793 kb on - strand, within Psyr_2896 at 3474.863 kb on + strand, within Psyr_2896 at 3474.964 kb on - strand, within Psyr_2896 at 3474.964 kb on - strand, within Psyr_2896 at 3474.996 kb on + strand, within Psyr_2896 at 3475.119 kb on + strand, within Psyr_2896 at 3475.405 kb on - strand, within Psyr_2896 at 3475.448 kb on + strand, within Psyr_2896 at 3475.448 kb on + strand, within Psyr_2896 at 3475.449 kb on - strand, within Psyr_2896 at 3475.449 kb on - strand, within Psyr_2896 at 3475.449 kb on - strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.804 kb on - strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.927 kb on - strand, within Psyr_2896 at 3475.927 kb on - strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.999 kb on - strand, within Psyr_2896 at 3475.999 kb on - strand, within Psyr_2896 at 3476.035 kb on - strand, within Psyr_2896 at 3476.172 kb on + strand at 3476.172 kb on + strand at 3476.214 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.243 kb on - strand at 3476.243 kb on - strand at 3476.243 kb on - strand at 3476.341 kb on + strand at 3476.342 kb on - strand at 3476.342 kb on - strand at 3476.394 kb on + strand, within Psyr_2897 at 3476.405 kb on + strand, within Psyr_2897 at 3476.405 kb on + strand, within Psyr_2897 at 3476.406 kb on - strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.585 kb on + strand, within Psyr_2897 at 3476.585 kb on + strand, within Psyr_2897 at 3476.586 kb on - strand, within Psyr_2897 at 3476.654 kb on + strand, within Psyr_2897 at 3476.654 kb on + strand, within Psyr_2897 at 3476.655 kb on - strand, within Psyr_2897 at 3476.941 kb on + strand at 3476.941 kb on + strand at 3476.941 kb on + strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.949 kb on + strand at 3476.949 kb on + strand at 3476.949 kb on + strand at 3476.950 kb on - strand at 3476.979 kb on + strand at 3477.021 kb on + strand at 3477.021 kb on + strand at 3477.022 kb on - strand at 3477.049 kb on + strand at 3477.050 kb on - strand at 3477.050 kb on - strand at 3477.124 kb on - strand at 3477.124 kb on - strand at 3477.124 kb on - strand at 3477.130 kb on + strand at 3477.234 kb on + strand, within Psyr_2898 at 3477.260 kb on - strand, within Psyr_2898
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 3,473,545 + Psyr_2894 0.75 +0.5 3,473,546 - Psyr_2894 0.75 -0.7 3,473,656 + -0.5 3,473,656 + -0.3 3,473,657 - -1.1 3,473,657 - +0.4 3,474,508 - -1.0 3,474,508 - -0.0 3,474,733 + Psyr_2896 0.14 +1.2 3,474,793 - Psyr_2896 0.17 +0.2 3,474,863 + Psyr_2896 0.21 -2.1 3,474,964 - Psyr_2896 0.26 -2.4 3,474,964 - Psyr_2896 0.26 +0.6 3,474,996 + Psyr_2896 0.28 -0.9 3,475,119 + Psyr_2896 0.35 -0.9 3,475,405 - Psyr_2896 0.50 -0.3 3,475,448 + Psyr_2896 0.53 -0.9 3,475,448 + Psyr_2896 0.53 +0.2 3,475,449 - Psyr_2896 0.53 +0.4 3,475,449 - Psyr_2896 0.53 +1.2 3,475,449 - Psyr_2896 0.53 -1.1 3,475,736 + Psyr_2896 0.69 -0.6 3,475,736 + Psyr_2896 0.69 -0.2 3,475,736 + Psyr_2896 0.69 -0.6 3,475,736 + Psyr_2896 0.69 +1.2 3,475,736 + Psyr_2896 0.69 +0.9 3,475,736 + Psyr_2896 0.69 +0.9 3,475,736 + Psyr_2896 0.69 -0.4 3,475,736 + Psyr_2896 0.69 -0.2 3,475,736 + Psyr_2896 0.69 -1.1 3,475,737 - Psyr_2896 0.69 +0.1 3,475,737 - Psyr_2896 0.69 -1.2 3,475,737 - Psyr_2896 0.69 -1.3 3,475,737 - Psyr_2896 0.69 -0.4 3,475,737 - Psyr_2896 0.69 -1.4 3,475,737 - Psyr_2896 0.69 +0.6 3,475,749 + Psyr_2896 0.69 +0.5 3,475,749 + Psyr_2896 0.69 -1.4 3,475,749 + Psyr_2896 0.69 +0.5 3,475,749 + Psyr_2896 0.69 +0.2 3,475,749 + Psyr_2896 0.69 -1.1 3,475,750 - Psyr_2896 0.69 -1.5 3,475,750 - Psyr_2896 0.69 -0.9 3,475,750 - Psyr_2896 0.69 -0.6 3,475,750 - Psyr_2896 0.69 +0.7 3,475,750 - Psyr_2896 0.69 -0.1 3,475,804 - Psyr_2896 0.72 -0.5 3,475,836 + Psyr_2896 0.74 -0.7 3,475,836 + Psyr_2896 0.74 +0.6 3,475,836 + Psyr_2896 0.74 +0.3 3,475,836 + Psyr_2896 0.74 +0.3 3,475,836 + Psyr_2896 0.74 +1.1 3,475,837 - Psyr_2896 0.74 -0.9 3,475,837 - Psyr_2896 0.74 -0.2 3,475,837 - Psyr_2896 0.74 -0.5 3,475,837 - Psyr_2896 0.74 -0.3 3,475,837 - Psyr_2896 0.74 +0.8 3,475,927 - Psyr_2896 0.79 -1.4 3,475,927 - Psyr_2896 0.79 +0.2 3,475,998 + Psyr_2896 0.83 -1.2 3,475,998 + Psyr_2896 0.83 -1.6 3,475,998 + Psyr_2896 0.83 -1.2 3,475,998 + Psyr_2896 0.83 -0.2 3,475,999 - Psyr_2896 0.83 -0.7 3,475,999 - Psyr_2896 0.83 +0.0 3,476,035 - Psyr_2896 0.85 -1.2 3,476,172 + -0.4 3,476,172 + +1.0 3,476,214 + +0.2 3,476,242 + +0.4 3,476,242 + +0.5 3,476,242 + -1.1 3,476,242 + +0.5 3,476,242 + +0.6 3,476,242 + +0.6 3,476,242 + +0.5 3,476,243 - +0.5 3,476,243 - -0.7 3,476,243 - -2.2 3,476,341 + -2.0 3,476,342 - -1.0 3,476,342 - -1.0 3,476,394 + Psyr_2897 0.12 -0.2 3,476,405 + Psyr_2897 0.14 -2.2 3,476,405 + Psyr_2897 0.14 -1.4 3,476,406 - Psyr_2897 0.14 -0.5 3,476,409 + Psyr_2897 0.15 -0.8 3,476,409 + Psyr_2897 0.15 -0.7 3,476,409 + Psyr_2897 0.15 -2.1 3,476,409 + Psyr_2897 0.15 +2.2 3,476,409 + Psyr_2897 0.15 -3.3 3,476,409 + Psyr_2897 0.15 -0.6 3,476,410 - Psyr_2897 0.15 -0.4 3,476,410 - Psyr_2897 0.15 -1.0 3,476,410 - Psyr_2897 0.15 -0.6 3,476,410 - Psyr_2897 0.15 -3.0 3,476,410 - Psyr_2897 0.15 -1.0 3,476,410 - Psyr_2897 0.15 -1.6 3,476,410 - Psyr_2897 0.15 -0.8 3,476,410 - Psyr_2897 0.15 -2.5 3,476,585 + Psyr_2897 0.41 -2.2 3,476,585 + Psyr_2897 0.41 -1.7 3,476,586 - Psyr_2897 0.41 -1.2 3,476,654 + Psyr_2897 0.51 +0.3 3,476,654 + Psyr_2897 0.51 -1.8 3,476,655 - Psyr_2897 0.51 +1.3 3,476,941 + -1.1 3,476,941 + +2.2 3,476,941 + -0.4 3,476,942 - -2.6 3,476,942 - -1.8 3,476,942 - +0.2 3,476,942 - -0.5 3,476,942 - -1.0 3,476,942 - -0.6 3,476,942 - +0.2 3,476,942 - -1.7 3,476,949 + -1.5 3,476,949 + -1.4 3,476,949 + -1.8 3,476,950 - -1.8 3,476,979 + -1.7 3,477,021 + -0.3 3,477,021 + -1.0 3,477,022 - +1.4 3,477,049 + +0.1 3,477,050 - -0.1 3,477,050 - -0.2 3,477,124 - -1.6 3,477,124 - -0.3 3,477,124 - +0.6 3,477,130 + -1.3 3,477,234 + Psyr_2898 0.30 -2.2 3,477,260 - Psyr_2898 0.37 -0.3
Or see this region's nucleotide sequence