Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2426

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2424 and Psyr_2425 are separated by 119 nucleotidesPsyr_2425 and Psyr_2426 are separated by 157 nucleotidesPsyr_2426 and Psyr_2427 are separated by 59 nucleotides Psyr_2424: Psyr_2424 - Integral membrane protein TerC, at 2,805,613 to 2,806,371 _2424 Psyr_2425: Psyr_2425 - hypothetical protein, at 2,806,491 to 2,806,736 _2425 Psyr_2426: Psyr_2426 - conserved domain protein, at 2,806,894 to 2,807,589 _2426 Psyr_2427: Psyr_2427 - gamma-glutamylputrescine oxidase, at 2,807,649 to 2,808,932 _2427 Position (kb) 2806 2807 2808Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2806.020 kb on - strand, within Psyr_2424at 2806.059 kb on + strand, within Psyr_2424at 2806.059 kb on + strand, within Psyr_2424at 2806.059 kb on + strand, within Psyr_2424at 2806.059 kb on + strand, within Psyr_2424at 2806.060 kb on - strand, within Psyr_2424at 2806.267 kb on + strand, within Psyr_2424at 2806.267 kb on + strand, within Psyr_2424at 2806.268 kb on - strand, within Psyr_2424at 2806.274 kb on - strand, within Psyr_2424at 2806.274 kb on - strand, within Psyr_2424at 2806.274 kb on - strand, within Psyr_2424at 2806.444 kb on + strandat 2806.444 kb on + strandat 2806.445 kb on - strandat 2806.481 kb on - strandat 2806.481 kb on - strandat 2806.534 kb on - strand, within Psyr_2425at 2806.546 kb on - strand, within Psyr_2425at 2806.592 kb on + strand, within Psyr_2425at 2806.592 kb on + strand, within Psyr_2425at 2806.592 kb on + strand, within Psyr_2425at 2806.592 kb on + strand, within Psyr_2425at 2806.592 kb on + strand, within Psyr_2425at 2806.592 kb on + strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.593 kb on - strand, within Psyr_2425at 2806.653 kb on + strand, within Psyr_2425at 2806.653 kb on + strand, within Psyr_2425at 2806.654 kb on - strand, within Psyr_2425at 2806.654 kb on - strand, within Psyr_2425at 2806.673 kb on + strand, within Psyr_2425at 2806.673 kb on + strand, within Psyr_2425at 2806.674 kb on - strand, within Psyr_2425at 2806.725 kb on - strandat 2806.745 kb on + strandat 2806.767 kb on + strandat 2806.768 kb on - strandat 2806.774 kb on + strandat 2806.775 kb on - strandat 2806.836 kb on + strandat 2806.836 kb on + strandat 2806.837 kb on - strandat 2806.837 kb on - strandat 2806.837 kb on - strandat 2806.921 kb on - strandat 2807.304 kb on - strand, within Psyr_2426at 2807.623 kb on - strandat 2807.635 kb on + strandat 2807.635 kb on + strandat 2807.677 kb on + strandat 2807.678 kb on - strandat 2807.680 kb on + strandat 2807.681 kb on - strandat 2807.799 kb on + strand, within Psyr_2427at 2807.800 kb on - strand, within Psyr_2427at 2807.821 kb on + strand, within Psyr_2427at 2807.822 kb on - strand, within Psyr_2427at 2807.855 kb on - strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.857 kb on + strand, within Psyr_2427at 2807.858 kb on - strand, within Psyr_2427at 2807.858 kb on - strand, within Psyr_2427at 2807.858 kb on - strand, within Psyr_2427at 2807.858 kb on - strand, within Psyr_2427at 2807.858 kb on - strand, within Psyr_2427at 2807.858 kb on - strand, within Psyr_2427at 2807.858 kb on - strand, within Psyr_2427at 2807.941 kb on - strand, within Psyr_2427at 2807.941 kb on - strand, within Psyr_2427at 2807.941 kb on - strand, within Psyr_2427at 2808.070 kb on + strand, within Psyr_2427at 2808.071 kb on - strand, within Psyr_2427at 2808.082 kb on + strand, within Psyr_2427at 2808.082 kb on + strand, within Psyr_2427at 2808.083 kb on - strand, within Psyr_2427at 2808.083 kb on - strand, within Psyr_2427at 2808.086 kb on + strand, within Psyr_2427at 2808.086 kb on + strand, within Psyr_2427at 2808.086 kb on + strand, within Psyr_2427at 2808.087 kb on - strand, within Psyr_2427at 2808.087 kb on - strand, within Psyr_2427at 2808.087 kb on - strand, within Psyr_2427at 2808.087 kb on - strand, within Psyr_2427at 2808.103 kb on + strand, within Psyr_2427at 2808.104 kb on - strand, within Psyr_2427at 2808.218 kb on - strand, within Psyr_2427at 2808.237 kb on - strand, within Psyr_2427at 2808.269 kb on + strand, within Psyr_2427at 2808.269 kb on + strand, within Psyr_2427at 2808.322 kb on + strand, within Psyr_2427at 2808.322 kb on + strand, within Psyr_2427at 2808.323 kb on - strand, within Psyr_2427at 2808.323 kb on - strand, within Psyr_2427at 2808.386 kb on + strand, within Psyr_2427at 2808.387 kb on - strand, within Psyr_2427at 2808.421 kb on + strand, within Psyr_2427at 2808.422 kb on - strand, within Psyr_2427at 2808.422 kb on - strand, within Psyr_2427at 2808.422 kb on - strand, within Psyr_2427at 2808.422 kb on - strand, within Psyr_2427at 2808.552 kb on + strand, within Psyr_2427

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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2,806,020 - Psyr_2424 0.54 -1.4
2,806,059 + Psyr_2424 0.59 -0.2
2,806,059 + Psyr_2424 0.59 +0.3
2,806,059 + Psyr_2424 0.59 -1.8
2,806,059 + Psyr_2424 0.59 +0.6
2,806,060 - Psyr_2424 0.59 -0.6
2,806,267 + Psyr_2424 0.86 -0.9
2,806,267 + Psyr_2424 0.86 +0.7
2,806,268 - Psyr_2424 0.86 -1.0
2,806,274 - Psyr_2424 0.87 +2.3
2,806,274 - Psyr_2424 0.87 +0.3
2,806,274 - Psyr_2424 0.87 -1.5
2,806,444 + +1.6
2,806,444 + +0.3
2,806,445 - +0.4
2,806,481 - +2.6
2,806,481 - -1.0
2,806,534 - Psyr_2425 0.17 +0.1
2,806,546 - Psyr_2425 0.22 +1.3
2,806,592 + Psyr_2425 0.41 -1.5
2,806,592 + Psyr_2425 0.41 +2.1
2,806,592 + Psyr_2425 0.41 -2.0
2,806,592 + Psyr_2425 0.41 -0.7
2,806,592 + Psyr_2425 0.41 -3.0
2,806,592 + Psyr_2425 0.41 +0.6
2,806,593 - Psyr_2425 0.41 -1.1
2,806,593 - Psyr_2425 0.41 +0.0
2,806,593 - Psyr_2425 0.41 -0.5
2,806,593 - Psyr_2425 0.41 -1.0
2,806,593 - Psyr_2425 0.41 +0.6
2,806,593 - Psyr_2425 0.41 -2.5
2,806,593 - Psyr_2425 0.41 -0.2
2,806,593 - Psyr_2425 0.41 +2.3
2,806,593 - Psyr_2425 0.41 -1.1
2,806,593 - Psyr_2425 0.41 -0.2
2,806,593 - Psyr_2425 0.41 +2.2
2,806,593 - Psyr_2425 0.41 -0.8
2,806,593 - Psyr_2425 0.41 +1.3
2,806,653 + Psyr_2425 0.66 -1.2
2,806,653 + Psyr_2425 0.66 -0.8
2,806,654 - Psyr_2425 0.66 +0.0
2,806,654 - Psyr_2425 0.66 -1.4
2,806,673 + Psyr_2425 0.74 +0.1
2,806,673 + Psyr_2425 0.74 -1.2
2,806,674 - Psyr_2425 0.74 -0.2
2,806,725 - +1.9
2,806,745 + +1.3
2,806,767 + -1.0
2,806,768 - +2.0
2,806,774 + -0.0
2,806,775 - +1.3
2,806,836 + -0.7
2,806,836 + -1.3
2,806,837 - +0.4
2,806,837 - -1.1
2,806,837 - -0.1
2,806,921 - -0.3
2,807,304 - Psyr_2426 0.59 +0.4
2,807,623 - +2.5
2,807,635 + +0.3
2,807,635 + +1.0
2,807,677 + +1.1
2,807,678 - -0.9
2,807,680 + -0.7
2,807,681 - -0.4
2,807,799 + Psyr_2427 0.12 +0.8
2,807,800 - Psyr_2427 0.12 +0.1
2,807,821 + Psyr_2427 0.13 -0.9
2,807,822 - Psyr_2427 0.13 +0.2
2,807,855 - Psyr_2427 0.16 +2.6
2,807,857 + Psyr_2427 0.16 +1.1
2,807,857 + Psyr_2427 0.16 +1.1
2,807,857 + Psyr_2427 0.16 -0.9
2,807,857 + Psyr_2427 0.16 +0.2
2,807,857 + Psyr_2427 0.16 -1.6
2,807,857 + Psyr_2427 0.16 -1.7
2,807,857 + Psyr_2427 0.16 -0.3
2,807,857 + Psyr_2427 0.16 +1.0
2,807,858 - Psyr_2427 0.16 +0.1
2,807,858 - Psyr_2427 0.16 +0.5
2,807,858 - Psyr_2427 0.16 -0.5
2,807,858 - Psyr_2427 0.16 -1.2
2,807,858 - Psyr_2427 0.16 +0.3
2,807,858 - Psyr_2427 0.16 +1.9
2,807,858 - Psyr_2427 0.16 +1.0
2,807,941 - Psyr_2427 0.23 +0.3
2,807,941 - Psyr_2427 0.23 +0.2
2,807,941 - Psyr_2427 0.23 -0.0
2,808,070 + Psyr_2427 0.33 -0.9
2,808,071 - Psyr_2427 0.33 +1.3
2,808,082 + Psyr_2427 0.34 +0.9
2,808,082 + Psyr_2427 0.34 +1.0
2,808,083 - Psyr_2427 0.34 -0.3
2,808,083 - Psyr_2427 0.34 +0.3
2,808,086 + Psyr_2427 0.34 -0.1
2,808,086 + Psyr_2427 0.34 +0.2
2,808,086 + Psyr_2427 0.34 -0.2
2,808,087 - Psyr_2427 0.34 -0.4
2,808,087 - Psyr_2427 0.34 +0.5
2,808,087 - Psyr_2427 0.34 -0.3
2,808,087 - Psyr_2427 0.34 +0.0
2,808,103 + Psyr_2427 0.35 -0.5
2,808,104 - Psyr_2427 0.35 +1.9
2,808,218 - Psyr_2427 0.44 +1.3
2,808,237 - Psyr_2427 0.46 -0.9
2,808,269 + Psyr_2427 0.48 -1.5
2,808,269 + Psyr_2427 0.48 -1.7
2,808,322 + Psyr_2427 0.52 -0.3
2,808,322 + Psyr_2427 0.52 +2.3
2,808,323 - Psyr_2427 0.52 -1.8
2,808,323 - Psyr_2427 0.52 -0.4
2,808,386 + Psyr_2427 0.57 -0.9
2,808,387 - Psyr_2427 0.57 -0.6
2,808,421 + Psyr_2427 0.60 -0.5
2,808,422 - Psyr_2427 0.60 -0.4
2,808,422 - Psyr_2427 0.60 -0.8
2,808,422 - Psyr_2427 0.60 +0.7
2,808,422 - Psyr_2427 0.60 -1.4
2,808,552 + Psyr_2427 0.70 +0.6

Or see this region's nucleotide sequence