Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2385 and Psyr_2386 are separated by 376 nucleotides Psyr_2386 and Psyr_2387 are separated by 156 nucleotides
Psyr_2385: Psyr_2385 - Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase, at 2,762,950 to 2,765,961
_2385
Psyr_2386: Psyr_2386 - hypothetical protein, at 2,766,338 to 2,766,574
_2386
Psyr_2387: Psyr_2387 - Malate:quinone-oxidoreductase, at 2,766,731 to 2,768,386
_2387
Position (kb)
2766
2767 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2765.432 kb on + strand, within Psyr_2385 at 2765.628 kb on - strand, within Psyr_2385 at 2765.653 kb on + strand, within Psyr_2385 at 2765.905 kb on + strand at 2766.098 kb on + strand at 2766.157 kb on + strand at 2766.157 kb on + strand at 2766.158 kb on - strand at 2766.158 kb on - strand at 2766.180 kb on + strand at 2766.180 kb on + strand at 2766.180 kb on + strand at 2766.181 kb on - strand at 2766.213 kb on - strand at 2766.218 kb on + strand at 2766.219 kb on - strand at 2766.226 kb on + strand at 2766.533 kb on + strand, within Psyr_2386 at 2766.533 kb on + strand, within Psyr_2386 at 2766.534 kb on - strand, within Psyr_2386 at 2766.534 kb on - strand, within Psyr_2386 at 2766.562 kb on + strand at 2766.563 kb on - strand at 2766.733 kb on - strand at 2766.800 kb on - strand at 2766.800 kb on - strand at 2766.852 kb on + strand at 2766.853 kb on - strand at 2766.853 kb on - strand at 2766.853 kb on - strand at 2766.853 kb on - strand at 2766.907 kb on + strand, within Psyr_2387 at 2766.907 kb on + strand, within Psyr_2387 at 2766.951 kb on - strand, within Psyr_2387 at 2767.173 kb on + strand at 2767.174 kb on - strand, within Psyr_2387 at 2767.283 kb on - strand, within Psyr_2387 at 2767.283 kb on - strand, within Psyr_2387 at 2767.314 kb on + strand, within Psyr_2387 at 2767.314 kb on + strand, within Psyr_2387
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 2,765,432 + Psyr_2385 0.82 -0.4 2,765,628 - Psyr_2385 0.89 -2.5 2,765,653 + Psyr_2385 0.90 -0.7 2,765,905 + +1.9 2,766,098 + +0.5 2,766,157 + +2.3 2,766,157 + -0.7 2,766,158 - +0.3 2,766,158 - +0.0 2,766,180 + +0.2 2,766,180 + -1.5 2,766,180 + -0.0 2,766,181 - +1.9 2,766,213 - -2.8 2,766,218 + +0.8 2,766,219 - +0.3 2,766,226 + -0.5 2,766,533 + Psyr_2386 0.82 -0.9 2,766,533 + Psyr_2386 0.82 -1.2 2,766,534 - Psyr_2386 0.83 -0.5 2,766,534 - Psyr_2386 0.83 +1.5 2,766,562 + +1.3 2,766,563 - -0.5 2,766,733 - -1.1 2,766,800 - -1.6 2,766,800 - -1.5 2,766,852 + +0.1 2,766,853 - -0.5 2,766,853 - -0.3 2,766,853 - +0.9 2,766,853 - +4.3 2,766,907 + Psyr_2387 0.11 -0.5 2,766,907 + Psyr_2387 0.11 +0.3 2,766,951 - Psyr_2387 0.13 +0.7 2,767,173 + +1.3 2,767,174 - Psyr_2387 0.27 +0.7 2,767,283 - Psyr_2387 0.33 +1.0 2,767,283 - Psyr_2387 0.33 +0.2 2,767,314 + Psyr_2387 0.35 -0.6 2,767,314 + Psyr_2387 0.35 -0.4
Or see this region's nucleotide sequence