Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2371 and Psyr_2372 are separated by 54 nucleotides Psyr_2372 and Psyr_2373 are separated by 16 nucleotides
Psyr_2371: Psyr_2371 - L-arabinose-binding protein, at 2,749,292 to 2,750,305
_2371
Psyr_2372: Psyr_2372 - L-arabinose ABC transporter ATP-binding protein, at 2,750,360 to 2,751,883
_2372
Psyr_2373: Psyr_2373 - L-arabinose ABC transporter membrane protein, at 2,751,900 to 2,752,889
_2373
Position (kb)
2750
2751
2752 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2749.793 kb on + strand, within Psyr_2371 at 2749.794 kb on - strand, within Psyr_2371 at 2749.811 kb on + strand, within Psyr_2371 at 2749.811 kb on + strand, within Psyr_2371 at 2749.811 kb on + strand, within Psyr_2371 at 2749.811 kb on + strand, within Psyr_2371 at 2749.811 kb on + strand, within Psyr_2371 at 2749.811 kb on + strand, within Psyr_2371 at 2749.811 kb on + strand, within Psyr_2371 at 2749.812 kb on - strand, within Psyr_2371 at 2749.812 kb on - strand, within Psyr_2371 at 2749.812 kb on - strand, within Psyr_2371 at 2749.812 kb on - strand, within Psyr_2371 at 2749.812 kb on - strand, within Psyr_2371 at 2749.814 kb on - strand, within Psyr_2371 at 2749.814 kb on - strand, within Psyr_2371 at 2749.931 kb on - strand, within Psyr_2371 at 2750.042 kb on - strand, within Psyr_2371 at 2750.140 kb on + strand, within Psyr_2371 at 2750.141 kb on - strand, within Psyr_2371 at 2750.225 kb on + strand at 2750.225 kb on + strand at 2750.225 kb on + strand at 2750.226 kb on - strand at 2750.277 kb on + strand at 2750.346 kb on + strand at 2750.347 kb on - strand at 2750.381 kb on + strand at 2750.381 kb on + strand at 2750.381 kb on + strand at 2750.382 kb on - strand at 2750.588 kb on + strand, within Psyr_2372 at 2750.588 kb on + strand, within Psyr_2372 at 2750.588 kb on + strand, within Psyr_2372 at 2750.589 kb on - strand, within Psyr_2372 at 2750.589 kb on - strand, within Psyr_2372 at 2750.738 kb on + strand, within Psyr_2372 at 2750.970 kb on - strand, within Psyr_2372 at 2751.122 kb on + strand, within Psyr_2372 at 2751.122 kb on + strand, within Psyr_2372 at 2751.122 kb on + strand, within Psyr_2372 at 2751.123 kb on - strand, within Psyr_2372 at 2751.123 kb on - strand, within Psyr_2372 at 2751.123 kb on - strand, within Psyr_2372 at 2751.123 kb on - strand, within Psyr_2372 at 2751.692 kb on + strand, within Psyr_2372 at 2751.923 kb on + strand at 2751.923 kb on + strand at 2751.923 kb on + strand at 2751.923 kb on + strand at 2751.923 kb on + strand at 2751.923 kb on + strand at 2751.923 kb on + strand at 2751.924 kb on - strand at 2751.924 kb on - strand at 2751.924 kb on - strand at 2751.924 kb on - strand at 2751.924 kb on - strand at 2751.924 kb on - strand at 2752.099 kb on + strand, within Psyr_2373 at 2752.099 kb on + strand, within Psyr_2373 at 2752.100 kb on - strand, within Psyr_2373 at 2752.100 kb on - strand, within Psyr_2373 at 2752.100 kb on - strand, within Psyr_2373 at 2752.100 kb on - strand, within Psyr_2373 at 2752.100 kb on - strand, within Psyr_2373 at 2752.100 kb on - strand, within Psyr_2373 at 2752.222 kb on + strand, within Psyr_2373 at 2752.223 kb on - strand, within Psyr_2373 at 2752.223 kb on - strand, within Psyr_2373 at 2752.357 kb on - strand, within Psyr_2373 at 2752.429 kb on - strand, within Psyr_2373 at 2752.429 kb on - strand, within Psyr_2373 at 2752.429 kb on - strand, within Psyr_2373 at 2752.471 kb on + strand, within Psyr_2373 at 2752.471 kb on + strand, within Psyr_2373 at 2752.494 kb on + strand, within Psyr_2373 at 2752.494 kb on + strand, within Psyr_2373 at 2752.494 kb on + strand, within Psyr_2373 at 2752.494 kb on + strand, within Psyr_2373 at 2752.494 kb on + strand, within Psyr_2373 at 2752.494 kb on + strand, within Psyr_2373 at 2752.495 kb on - strand, within Psyr_2373 at 2752.495 kb on - strand at 2752.495 kb on - strand, within Psyr_2373 at 2752.495 kb on - strand, within Psyr_2373 at 2752.503 kb on + strand, within Psyr_2373 at 2752.504 kb on - strand, within Psyr_2373 at 2752.504 kb on - strand, within Psyr_2373 at 2752.504 kb on - strand, within Psyr_2373 at 2752.627 kb on + strand, within Psyr_2373 at 2752.706 kb on - strand, within Psyr_2373 at 2752.706 kb on - strand, within Psyr_2373 at 2752.821 kb on + strand at 2752.827 kb on + strand at 2752.827 kb on + strand at 2752.827 kb on + strand at 2752.827 kb on + strand at 2752.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 2,749,793 + Psyr_2371 0.49 +2.0 2,749,794 - Psyr_2371 0.50 +0.9 2,749,811 + Psyr_2371 0.51 +1.0 2,749,811 + Psyr_2371 0.51 +1.3 2,749,811 + Psyr_2371 0.51 +1.3 2,749,811 + Psyr_2371 0.51 -1.0 2,749,811 + Psyr_2371 0.51 +0.5 2,749,811 + Psyr_2371 0.51 +0.1 2,749,811 + Psyr_2371 0.51 -0.3 2,749,812 - Psyr_2371 0.51 +1.3 2,749,812 - Psyr_2371 0.51 +3.3 2,749,812 - Psyr_2371 0.51 -0.9 2,749,812 - Psyr_2371 0.51 -1.2 2,749,812 - Psyr_2371 0.51 +1.3 2,749,814 - Psyr_2371 0.51 +0.6 2,749,814 - Psyr_2371 0.51 +0.7 2,749,931 - Psyr_2371 0.63 -0.6 2,750,042 - Psyr_2371 0.74 +1.1 2,750,140 + Psyr_2371 0.84 +0.3 2,750,141 - Psyr_2371 0.84 -0.2 2,750,225 + -0.4 2,750,225 + +1.3 2,750,225 + +1.1 2,750,226 - -3.1 2,750,277 + -0.1 2,750,346 + -1.6 2,750,347 - -0.5 2,750,381 + -1.0 2,750,381 + +0.1 2,750,381 + -0.6 2,750,382 - -0.7 2,750,588 + Psyr_2372 0.15 -2.0 2,750,588 + Psyr_2372 0.15 -0.1 2,750,588 + Psyr_2372 0.15 -0.6 2,750,589 - Psyr_2372 0.15 -2.0 2,750,589 - Psyr_2372 0.15 -0.9 2,750,738 + Psyr_2372 0.25 +1.1 2,750,970 - Psyr_2372 0.40 +1.5 2,751,122 + Psyr_2372 0.50 +0.4 2,751,122 + Psyr_2372 0.50 +0.7 2,751,122 + Psyr_2372 0.50 +1.0 2,751,123 - Psyr_2372 0.50 +1.1 2,751,123 - Psyr_2372 0.50 +0.1 2,751,123 - Psyr_2372 0.50 +0.0 2,751,123 - Psyr_2372 0.50 +0.3 2,751,692 + Psyr_2372 0.87 -0.4 2,751,923 + -1.0 2,751,923 + +1.9 2,751,923 + -0.4 2,751,923 + -1.6 2,751,923 + -0.9 2,751,923 + +1.4 2,751,923 + -1.5 2,751,924 - -0.1 2,751,924 - -0.9 2,751,924 - -0.6 2,751,924 - +0.5 2,751,924 - -1.5 2,751,924 - +0.0 2,752,099 + Psyr_2373 0.20 -0.5 2,752,099 + Psyr_2373 0.20 +3.3 2,752,100 - Psyr_2373 0.20 -0.0 2,752,100 - Psyr_2373 0.20 -0.0 2,752,100 - Psyr_2373 0.20 -2.0 2,752,100 - Psyr_2373 0.20 -0.1 2,752,100 - Psyr_2373 0.20 -0.8 2,752,100 - Psyr_2373 0.20 -0.0 2,752,222 + Psyr_2373 0.33 +0.4 2,752,223 - Psyr_2373 0.33 -0.8 2,752,223 - Psyr_2373 0.33 +2.3 2,752,357 - Psyr_2373 0.46 +0.7 2,752,429 - Psyr_2373 0.53 -0.6 2,752,429 - Psyr_2373 0.53 +0.2 2,752,429 - Psyr_2373 0.53 +0.1 2,752,471 + Psyr_2373 0.58 -1.3 2,752,471 + Psyr_2373 0.58 -1.7 2,752,494 + Psyr_2373 0.60 +1.3 2,752,494 + Psyr_2373 0.60 -1.2 2,752,494 + Psyr_2373 0.60 -0.8 2,752,494 + Psyr_2373 0.60 -0.3 2,752,494 + Psyr_2373 0.60 +1.6 2,752,494 + Psyr_2373 0.60 +1.6 2,752,495 - Psyr_2373 0.60 -0.4 2,752,495 - +0.3 2,752,495 - Psyr_2373 0.60 -0.2 2,752,495 - Psyr_2373 0.60 +1.8 2,752,503 + Psyr_2373 0.61 +1.3 2,752,504 - Psyr_2373 0.61 +0.6 2,752,504 - Psyr_2373 0.61 -0.5 2,752,504 - Psyr_2373 0.61 +0.4 2,752,627 + Psyr_2373 0.73 +1.9 2,752,706 - Psyr_2373 0.81 -0.3 2,752,706 - Psyr_2373 0.81 -0.3 2,752,821 + -0.4 2,752,827 + +0.1 2,752,827 + +2.7 2,752,827 + -0.3 2,752,827 + -3.8 2,752,828 - +0.7
Or see this region's nucleotide sequence