Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2245
Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Dimethyl Sulfoxide 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
2,609,944 | + | -1.1 | |||
2,609,957 | - | -3.4 | |||
2,610,114 | + | -0.4 | |||
2,610,161 | + | +0.8 | |||
2,610,162 | - | -0.7 | |||
2,610,166 | - | +1.5 | |||
2,610,193 | + | +0.2 | |||
2,610,681 | - | Psyr_2245 | 0.46 | -0.9 | |
2,610,681 | - | Psyr_2245 | 0.46 | -2.3 | |
2,610,954 | - | Psyr_2245 | 0.77 | -0.5 | |
2,611,100 | - | +2.8 | |||
2,611,224 | - | -1.0 | |||
2,611,258 | + | -0.6 | |||
2,611,258 | + | -0.7 | |||
2,611,272 | + | +1.9 | |||
2,611,366 | - | -0.5 | |||
2,611,366 | - | -2.4 | |||
2,611,718 | + | Psyr_2246 | 0.15 | +1.2 | |
2,611,742 | + | Psyr_2246 | 0.16 | +3.5 | |
2,611,743 | - | Psyr_2246 | 0.16 | -0.4 | |
2,611,743 | - | Psyr_2246 | 0.16 | +0.8 | |
2,611,803 | - | Psyr_2246 | 0.19 | -0.2 | |
2,611,826 | + | Psyr_2246 | 0.20 | +0.4 | |
2,611,826 | + | Psyr_2246 | 0.20 | -0.1 | |
2,611,871 | + | Psyr_2246 | 0.23 | -1.4 | |
2,611,871 | + | Psyr_2246 | 0.23 | -0.5 | |
2,611,871 | + | Psyr_2246 | 0.23 | -0.6 | |
2,611,872 | - | Psyr_2246 | 0.23 | +0.5 | |
2,611,872 | - | Psyr_2246 | 0.23 | +0.8 | |
2,611,872 | - | Psyr_2246 | 0.23 | +0.8 | |
2,612,018 | + | Psyr_2246 | 0.30 | +1.6 | |
2,612,111 | - | Psyr_2246 | 0.35 | -0.6 | |
2,612,122 | + | Psyr_2246 | 0.36 | +0.8 | |
2,612,122 | + | Psyr_2246 | 0.36 | +0.2 |
Or see this region's nucleotide sequence