Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1681

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1679 and Psyr_1680 are separated by 206 nucleotidesPsyr_1680 and Psyr_1681 are separated by 415 nucleotidesPsyr_1681 and Psyr_1682 overlap by 1 nucleotides Psyr_1679: Psyr_1679 - Hypothetical protein, at 1,887,619 to 1,887,960 _1679 Psyr_1680: Psyr_1680 - Hypothetical protein, at 1,888,167 to 1,888,448 _1680 Psyr_1681: Psyr_1681 - Major facilitator superfamily, at 1,888,864 to 1,890,072 _1681 Psyr_1682: Psyr_1682 - arsenite efflux membrane protein ArsB, at 1,890,072 to 1,891,352 _1682 Position (kb) 1888 1889 1890 1891Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1888.816 kb on + strandat 1888.851 kb on - strandat 1888.860 kb on + strandat 1888.860 kb on + strandat 1888.860 kb on + strandat 1888.860 kb on + strandat 1888.860 kb on + strandat 1888.860 kb on + strandat 1888.861 kb on - strandat 1888.861 kb on - strandat 1888.861 kb on - strandat 1888.861 kb on - strandat 1888.861 kb on - strandat 1888.861 kb on - strandat 1888.861 kb on - strandat 1889.003 kb on - strand, within Psyr_1681at 1889.024 kb on - strand, within Psyr_1681at 1889.107 kb on + strand, within Psyr_1681at 1889.107 kb on + strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.605 kb on + strand, within Psyr_1681at 1889.606 kb on - strand, within Psyr_1681at 1889.606 kb on - strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.795 kb on - strand, within Psyr_1681at 1889.820 kb on - strand, within Psyr_1681at 1889.875 kb on + strand, within Psyr_1681at 1889.876 kb on - strand, within Psyr_1681at 1890.070 kb on + strandat 1890.071 kb on - strandat 1890.071 kb on - strandat 1890.071 kb on - strandat 1890.071 kb on - strandat 1890.142 kb on + strandat 1890.570 kb on + strand, within Psyr_1682at 1890.570 kb on + strand, within Psyr_1682at 1890.571 kb on - strand, within Psyr_1682at 1890.660 kb on + strand, within Psyr_1682at 1890.660 kb on + strand, within Psyr_1682at 1890.661 kb on - strand, within Psyr_1682at 1890.872 kb on + strand, within Psyr_1682at 1890.873 kb on - strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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1,888,816 + +0.7
1,888,851 - +2.1
1,888,860 + +0.9
1,888,860 + -0.7
1,888,860 + +0.5
1,888,860 + +1.1
1,888,860 + -2.6
1,888,860 + -0.3
1,888,861 - +3.1
1,888,861 - -1.6
1,888,861 - +0.2
1,888,861 - +2.6
1,888,861 - -0.6
1,888,861 - +0.6
1,888,861 - -0.4
1,889,003 - Psyr_1681 0.11 +1.0
1,889,024 - Psyr_1681 0.13 -0.1
1,889,107 + Psyr_1681 0.20 +1.7
1,889,107 + Psyr_1681 0.20 +2.4
1,889,108 - Psyr_1681 0.20 -0.9
1,889,108 - Psyr_1681 0.20 +1.7
1,889,108 - Psyr_1681 0.20 +0.2
1,889,108 - Psyr_1681 0.20 -0.3
1,889,584 + Psyr_1681 0.60 -0.4
1,889,584 + Psyr_1681 0.60 +0.3
1,889,584 + Psyr_1681 0.60 -0.3
1,889,584 + Psyr_1681 0.60 -0.7
1,889,584 + Psyr_1681 0.60 +1.7
1,889,584 + Psyr_1681 0.60 +0.6
1,889,584 + Psyr_1681 0.60 -2.6
1,889,584 + Psyr_1681 0.60 -0.8
1,889,584 + Psyr_1681 0.60 -0.4
1,889,585 - Psyr_1681 0.60 -0.1
1,889,585 - Psyr_1681 0.60 +0.3
1,889,585 - Psyr_1681 0.60 +1.1
1,889,585 - Psyr_1681 0.60 +1.6
1,889,585 - Psyr_1681 0.60 -1.1
1,889,585 - Psyr_1681 0.60 +0.2
1,889,605 + Psyr_1681 0.61 +1.9
1,889,606 - Psyr_1681 0.61 -1.1
1,889,606 - Psyr_1681 0.61 +0.2
1,889,617 + Psyr_1681 0.62 -1.5
1,889,617 + Psyr_1681 0.62 +0.9
1,889,617 + Psyr_1681 0.62 -0.9
1,889,617 + Psyr_1681 0.62 -0.2
1,889,618 - Psyr_1681 0.62 -0.9
1,889,618 - Psyr_1681 0.62 -1.8
1,889,618 - Psyr_1681 0.62 -0.7
1,889,618 - Psyr_1681 0.62 +0.3
1,889,618 - Psyr_1681 0.62 -1.4
1,889,795 - Psyr_1681 0.77 +0.0
1,889,820 - Psyr_1681 0.79 +3.2
1,889,875 + Psyr_1681 0.84 -0.1
1,889,876 - Psyr_1681 0.84 +2.7
1,890,070 + +1.6
1,890,071 - -1.0
1,890,071 - -0.5
1,890,071 - +0.6
1,890,071 - -0.2
1,890,142 + -1.2
1,890,570 + Psyr_1682 0.39 -0.2
1,890,570 + Psyr_1682 0.39 +0.6
1,890,571 - Psyr_1682 0.39 -0.8
1,890,660 + Psyr_1682 0.46 -0.1
1,890,660 + Psyr_1682 0.46 -1.3
1,890,661 - Psyr_1682 0.46 -0.3
1,890,872 + Psyr_1682 0.62 +1.5
1,890,873 - Psyr_1682 0.63 +1.4
1,890,939 + Psyr_1682 0.68 +1.5
1,890,939 + Psyr_1682 0.68 +1.0
1,890,939 + Psyr_1682 0.68 -1.2
1,890,939 + Psyr_1682 0.68 +0.5
1,890,939 + Psyr_1682 0.68 -1.1
1,890,939 + Psyr_1682 0.68 +1.7
1,890,939 + Psyr_1682 0.68 +1.7
1,890,939 + Psyr_1682 0.68 +1.2
1,890,939 + Psyr_1682 0.68 +0.1
1,890,940 - Psyr_1682 0.68 -0.3
1,890,940 - Psyr_1682 0.68 -0.8
1,890,940 - Psyr_1682 0.68 -1.9
1,890,940 - Psyr_1682 0.68 +2.3
1,890,940 - +1.5

Or see this region's nucleotide sequence