Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0649

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0648 and Psyr_0649 are separated by 85 nucleotidesPsyr_0649 and Psyr_0650 are separated by 244 nucleotides Psyr_0648: Psyr_0648 - transporter, putative, at 735,983 to 737,011 _0648 Psyr_0649: Psyr_0649 - transcriptional regulator, AraC family, at 737,097 to 737,900 _0649 Psyr_0650: Psyr_0650 - Protein of unknown function RIO1, at 738,145 to 739,041 _0650 Position (kb) 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 736.362 kb on + strand, within Psyr_0648at 736.362 kb on + strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.449 kb on - strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.932 kb on + strandat 736.932 kb on + strandat 736.932 kb on + strandat 736.933 kb on - strandat 737.033 kb on + strandat 737.033 kb on + strandat 737.055 kb on - strandat 737.085 kb on + strandat 737.085 kb on + strandat 737.086 kb on - strandat 737.086 kb on - strandat 737.086 kb on - strandat 737.093 kb on + strandat 737.094 kb on - strandat 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.898 kb on + strandat 737.898 kb on + strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.935 kb on - strandat 737.935 kb on - strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.974 kb on + strandat 737.975 kb on - strandat 738.009 kb on + strandat 738.094 kb on - strandat 738.136 kb on + strandat 738.156 kb on + strandat 738.157 kb on - strandat 738.238 kb on + strand, within Psyr_0650at 738.238 kb on + strand, within Psyr_0650at 738.238 kb on + strand, within Psyr_0650at 738.238 kb on + strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.280 kb on + strand, within Psyr_0650at 738.280 kb on + strand, within Psyr_0650at 738.280 kb on + strand, within Psyr_0650at 738.281 kb on - strand, within Psyr_0650at 738.515 kb on + strand, within Psyr_0650at 738.515 kb on + strand, within Psyr_0650at 738.526 kb on + strand, within Psyr_0650at 738.778 kb on + strand, within Psyr_0650at 738.778 kb on + strand, within Psyr_0650at 738.779 kb on - strand, within Psyr_0650at 738.817 kb on + strand, within Psyr_0650at 738.817 kb on + strand, within Psyr_0650at 738.817 kb on + strand, within Psyr_0650at 738.818 kb on - strand, within Psyr_0650at 738.818 kb on - strand, within Psyr_0650at 738.818 kb on - strand, within Psyr_0650at 738.838 kb on + strand, within Psyr_0650at 738.838 kb on + strand, within Psyr_0650at 738.838 kb on + strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.841 kb on + strand, within Psyr_0650at 738.841 kb on + strand, within Psyr_0650at 738.842 kb on - strand, within Psyr_0650at 738.842 kb on - strand, within Psyr_0650at 738.842 kb on - strand, within Psyr_0650

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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736,362 + Psyr_0648 0.37 -1.8
736,362 + Psyr_0648 0.37 +0.4
736,363 - Psyr_0648 0.37 -2.0
736,363 - Psyr_0648 0.37 -0.5
736,404 + Psyr_0648 0.41 +0.8
736,404 + Psyr_0648 0.41 +0.4
736,405 - Psyr_0648 0.41 +1.8
736,405 - Psyr_0648 0.41 -2.5
736,405 - Psyr_0648 0.41 +0.9
736,405 - Psyr_0648 0.41 +2.8
736,405 - Psyr_0648 0.41 +2.2
736,448 + Psyr_0648 0.45 -0.4
736,448 + Psyr_0648 0.45 +0.5
736,449 - Psyr_0648 0.45 +0.4
736,859 + Psyr_0648 0.85 -2.7
736,859 + Psyr_0648 0.85 -0.4
736,860 - Psyr_0648 0.85 +0.4
736,860 - Psyr_0648 0.85 +1.2
736,860 - Psyr_0648 0.85 -1.5
736,884 + Psyr_0648 0.88 -0.6
736,884 + Psyr_0648 0.88 +0.7
736,885 - Psyr_0648 0.88 -0.4
736,885 - Psyr_0648 0.88 -0.6
736,885 - Psyr_0648 0.88 -1.2
736,885 - Psyr_0648 0.88 -0.5
736,932 + +2.2
736,932 + +0.4
736,932 + +1.7
736,933 - -0.4
737,033 + +1.4
737,033 + +0.1
737,055 - +0.6
737,085 + +0.3
737,085 + -0.7
737,086 - +0.6
737,086 - -0.6
737,086 - +0.3
737,093 + +0.4
737,094 - +0.1
737,181 + Psyr_0649 0.10 -0.5
737,181 + Psyr_0649 0.10 -0.5
737,181 + Psyr_0649 0.10 -0.3
737,181 + Psyr_0649 0.10 +0.3
737,181 + Psyr_0649 0.10 -0.2
737,182 - Psyr_0649 0.11 -0.4
737,182 - Psyr_0649 0.11 -0.0
737,182 - Psyr_0649 0.11 -1.5
737,388 + Psyr_0649 0.36 -0.1
737,388 + Psyr_0649 0.36 +0.0
737,388 + Psyr_0649 0.36 -0.0
737,388 + Psyr_0649 0.36 -0.4
737,388 + Psyr_0649 0.36 -0.9
737,388 + Psyr_0649 0.36 +0.8
737,389 - Psyr_0649 0.36 -0.5
737,389 - Psyr_0649 0.36 -0.6
737,389 - Psyr_0649 0.36 -0.2
737,389 - Psyr_0649 0.36 -0.6
737,389 - Psyr_0649 0.36 -0.2
737,389 - Psyr_0649 0.36 +0.2
737,389 - Psyr_0649 0.36 -1.7
737,389 - Psyr_0649 0.36 +0.2
737,389 - Psyr_0649 0.36 -1.6
737,898 + -0.9
737,898 + -0.5
737,899 - +0.2
737,899 - +1.2
737,899 - +1.2
737,899 - -1.1
737,899 - -0.4
737,899 - -0.4
737,934 + +0.3
737,934 + +1.4
737,934 + +0.8
737,934 + -0.1
737,934 + -0.3
737,935 - +0.8
737,935 - -0.9
737,955 + -2.6
737,955 + -0.6
737,955 + +3.2
737,955 + -0.8
737,956 - -1.0
737,956 - +0.8
737,956 - -1.6
737,956 - +0.2
737,974 + -1.0
737,975 - -0.9
738,009 + +0.6
738,094 - -1.0
738,136 + +0.3
738,156 + -0.2
738,157 - -3.6
738,238 + Psyr_0650 0.10 +2.0
738,238 + Psyr_0650 0.10 +2.8
738,238 + Psyr_0650 0.10 +0.8
738,238 + Psyr_0650 0.10 -0.8
738,239 - Psyr_0650 0.10 +0.2
738,239 - Psyr_0650 0.10 -0.7
738,239 - Psyr_0650 0.10 +0.5
738,239 - Psyr_0650 0.10 +0.4
738,239 - Psyr_0650 0.10 -2.9
738,239 - Psyr_0650 0.10 -1.4
738,239 - Psyr_0650 0.10 -0.5
738,280 + Psyr_0650 0.15 +0.2
738,280 + Psyr_0650 0.15 +0.2
738,280 + Psyr_0650 0.15 -1.8
738,281 - Psyr_0650 0.15 -0.3
738,515 + Psyr_0650 0.41 +0.8
738,515 + Psyr_0650 0.41 +0.6
738,526 + Psyr_0650 0.42 +0.1
738,778 + Psyr_0650 0.71 -0.6
738,778 + Psyr_0650 0.71 -1.4
738,779 - Psyr_0650 0.71 -0.1
738,817 + Psyr_0650 0.75 +3.0
738,817 + Psyr_0650 0.75 +0.5
738,817 + Psyr_0650 0.75 +3.1
738,818 - Psyr_0650 0.75 +1.7
738,818 - Psyr_0650 0.75 +1.1
738,818 - Psyr_0650 0.75 -0.3
738,838 + Psyr_0650 0.77 -1.6
738,838 + Psyr_0650 0.77 +0.0
738,838 + Psyr_0650 0.77 +1.2
738,839 - Psyr_0650 0.77 -1.6
738,839 - Psyr_0650 0.77 -1.2
738,839 - Psyr_0650 0.77 -0.1
738,839 - Psyr_0650 0.77 -0.1
738,841 + Psyr_0650 0.78 -0.5
738,841 + Psyr_0650 0.78 +0.2
738,842 - Psyr_0650 0.78 +1.2
738,842 - Psyr_0650 0.78 +0.3
738,842 - Psyr_0650 0.78 +0.6

Or see this region's nucleotide sequence