Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0410

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0409 and Psyr_0410 are separated by 10 nucleotidesPsyr_0410 and Psyr_0411 are separated by 358 nucleotides Psyr_0409: Psyr_0409 - 3-dehydroquinate synthase, at 439,198 to 440,301 _0409 Psyr_0410: Psyr_0410 - conserved hypothetical protein, at 440,312 to 441,934 _0410 Psyr_0411: Psyr_0411 - glutamate synthase (NADPH) large subunit, at 442,293 to 446,738 _0411 Position (kb) 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 440.317 kb on + strandat 440.317 kb on + strandat 440.317 kb on + strandat 440.317 kb on + strandat 440.317 kb on + strandat 440.317 kb on + strandat 440.317 kb on + strandat 440.317 kb on + strandat 440.318 kb on - strandat 440.318 kb on - strandat 440.318 kb on - strandat 440.318 kb on - strandat 440.318 kb on - strandat 440.318 kb on - strandat 440.693 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.787 kb on + strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.788 kb on - strand, within Psyr_0410at 440.894 kb on + strand, within Psyr_0410at 440.894 kb on + strand, within Psyr_0410at 440.895 kb on - strand, within Psyr_0410at 440.918 kb on + strand, within Psyr_0410at 440.918 kb on + strand, within Psyr_0410at 440.918 kb on + strand, within Psyr_0410at 440.918 kb on + strand, within Psyr_0410at 440.919 kb on - strand, within Psyr_0410at 441.031 kb on - strand, within Psyr_0410at 441.031 kb on - strand, within Psyr_0410at 441.031 kb on - strand, within Psyr_0410at 441.120 kb on + strand, within Psyr_0410at 441.120 kb on + strand, within Psyr_0410at 441.120 kb on + strand, within Psyr_0410at 441.121 kb on - strand, within Psyr_0410at 441.121 kb on - strand, within Psyr_0410at 441.121 kb on - strand, within Psyr_0410at 441.144 kb on + strand, within Psyr_0410at 441.144 kb on + strand, within Psyr_0410at 441.145 kb on - strand, within Psyr_0410at 441.445 kb on + strand, within Psyr_0410at 441.446 kb on - strand, within Psyr_0410at 441.446 kb on - strand, within Psyr_0410at 441.683 kb on + strand, within Psyr_0410at 441.684 kb on - strand, within Psyr_0410at 441.684 kb on - strand, within Psyr_0410at 441.684 kb on - strand, within Psyr_0410at 441.731 kb on + strand, within Psyr_0410at 441.731 kb on + strand, within Psyr_0410at 441.731 kb on + strand, within Psyr_0410at 441.731 kb on + strand, within Psyr_0410at 441.731 kb on + strand, within Psyr_0410at 441.731 kb on + strand, within Psyr_0410at 441.732 kb on - strand, within Psyr_0410at 441.732 kb on - strand, within Psyr_0410at 441.762 kb on - strand, within Psyr_0410at 441.762 kb on - strand, within Psyr_0410at 441.762 kb on - strand, within Psyr_0410at 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.794 kb on + strandat 441.795 kb on - strandat 441.795 kb on - strandat 441.795 kb on - strandat 441.795 kb on - strandat 441.795 kb on - strandat 441.795 kb on - strandat 441.795 kb on - strandat 441.795 kb on - strandat 441.806 kb on + strandat 441.806 kb on + strandat 441.852 kb on + strandat 441.892 kb on + strandat 442.031 kb on - strandat 442.031 kb on - strandat 442.042 kb on - strandat 442.079 kb on + strandat 442.178 kb on + strandat 442.178 kb on + strandat 442.178 kb on + strandat 442.178 kb on + strandat 442.179 kb on - strandat 442.179 kb on - strandat 442.292 kb on + strandat 442.292 kb on + strandat 442.293 kb on - strandat 442.308 kb on + strandat 442.331 kb on + strandat 442.331 kb on + strandat 442.331 kb on + strandat 442.332 kb on - strandat 442.358 kb on + strandat 442.358 kb on + strandat 442.358 kb on + strandat 442.359 kb on - strandat 442.359 kb on - strandat 442.359 kb on - strandat 442.545 kb on + strandat 442.546 kb on - strandat 442.723 kb on + strandat 442.723 kb on + strandat 442.723 kb on + strandat 442.723 kb on + strandat 442.724 kb on - strandat 442.824 kb on + strand, within Psyr_0411at 442.824 kb on + strand, within Psyr_0411at 442.824 kb on + strand, within Psyr_0411at 442.824 kb on + strand, within Psyr_0411at 442.824 kb on + strand, within Psyr_0411at 442.824 kb on + strand, within Psyr_0411at 442.824 kb on + strand, within Psyr_0411at 442.824 kb on + strand, within Psyr_0411at 442.825 kb on - strand, within Psyr_0411at 442.825 kb on - strand, within Psyr_0411at 442.825 kb on - strand, within Psyr_0411at 442.825 kb on - strand, within Psyr_0411at 442.825 kb on - strand, within Psyr_0411at 442.825 kb on - strand, within Psyr_0411at 442.825 kb on - strand, within Psyr_0411at 442.857 kb on + strand, within Psyr_0411at 442.857 kb on + strand, within Psyr_0411at 442.858 kb on - strand, within Psyr_0411at 442.858 kb on - strand, within Psyr_0411at 442.858 kb on - strand, within Psyr_0411at 442.858 kb on - strand, within Psyr_0411at 442.858 kb on - strand, within Psyr_0411at 442.858 kb on - strand, within Psyr_0411at 442.858 kb on - strand, within Psyr_0411at 442.932 kb on - strand, within Psyr_0411at 442.932 kb on - strand, within Psyr_0411

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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440,317 + -0.2
440,317 + +1.1
440,317 + -2.8
440,317 + -1.1
440,317 + -0.3
440,317 + +0.5
440,317 + -0.2
440,317 + -0.7
440,318 - +0.7
440,318 - -0.7
440,318 - +0.5
440,318 - +0.5
440,318 - -0.4
440,318 - +0.3
440,693 + Psyr_0410 0.23 +2.8
440,787 + Psyr_0410 0.29 -0.6
440,787 + Psyr_0410 0.29 +0.0
440,787 + Psyr_0410 0.29 -2.1
440,787 + Psyr_0410 0.29 -0.7
440,787 + Psyr_0410 0.29 +0.4
440,787 + Psyr_0410 0.29 -0.1
440,787 + Psyr_0410 0.29 -0.1
440,787 + Psyr_0410 0.29 -1.3
440,787 + Psyr_0410 0.29 +0.4
440,788 - Psyr_0410 0.29 +0.4
440,788 - Psyr_0410 0.29 +0.6
440,788 - Psyr_0410 0.29 -1.0
440,788 - Psyr_0410 0.29 -1.6
440,788 - Psyr_0410 0.29 +0.4
440,788 - Psyr_0410 0.29 -1.2
440,788 - Psyr_0410 0.29 -1.9
440,788 - Psyr_0410 0.29 +0.4
440,788 - Psyr_0410 0.29 -0.8
440,894 + Psyr_0410 0.36 -1.2
440,894 + Psyr_0410 0.36 -0.8
440,895 - Psyr_0410 0.36 -0.8
440,918 + Psyr_0410 0.37 -1.5
440,918 + Psyr_0410 0.37 +0.6
440,918 + Psyr_0410 0.37 -0.9
440,918 + Psyr_0410 0.37 -0.7
440,919 - Psyr_0410 0.37 -0.9
441,031 - Psyr_0410 0.44 -1.1
441,031 - Psyr_0410 0.44 +0.4
441,031 - Psyr_0410 0.44 -0.1
441,120 + Psyr_0410 0.50 -1.0
441,120 + Psyr_0410 0.50 -0.4
441,120 + Psyr_0410 0.50 -0.6
441,121 - Psyr_0410 0.50 -1.3
441,121 - Psyr_0410 0.50 +0.2
441,121 - Psyr_0410 0.50 -1.5
441,144 + Psyr_0410 0.51 -1.6
441,144 + Psyr_0410 0.51 -1.0
441,145 - Psyr_0410 0.51 +0.2
441,445 + Psyr_0410 0.70 +0.5
441,446 - Psyr_0410 0.70 -2.1
441,446 - Psyr_0410 0.70 -0.9
441,683 + Psyr_0410 0.84 -1.0
441,684 - Psyr_0410 0.85 -0.4
441,684 - Psyr_0410 0.85 +0.0
441,684 - Psyr_0410 0.85 -0.4
441,731 + Psyr_0410 0.87 -1.6
441,731 + Psyr_0410 0.87 -0.1
441,731 + Psyr_0410 0.87 +0.3
441,731 + Psyr_0410 0.87 +0.6
441,731 + Psyr_0410 0.87 -0.2
441,731 + Psyr_0410 0.87 +1.2
441,732 - Psyr_0410 0.87 -0.4
441,732 - Psyr_0410 0.87 -0.4
441,762 - Psyr_0410 0.89 -2.6
441,762 - Psyr_0410 0.89 +0.8
441,762 - Psyr_0410 0.89 -0.6
441,794 + -2.2
441,794 + -0.9
441,794 + -1.0
441,794 + -1.4
441,794 + -1.4
441,794 + -0.8
441,794 + -0.8
441,794 + -0.1
441,794 + -0.1
441,794 + +0.1
441,794 + -1.6
441,794 + -0.0
441,794 + -1.1
441,794 + +1.1
441,795 - -1.8
441,795 - +0.2
441,795 - -3.2
441,795 - +1.8
441,795 - -2.1
441,795 - -0.2
441,795 - -0.1
441,795 - -0.8
441,806 + +0.1
441,806 + +0.6
441,852 + -1.9
441,892 + +0.4
442,031 - +1.2
442,031 - +0.4
442,042 - -0.1
442,079 + +1.1
442,178 + +2.4
442,178 + +1.2
442,178 + -0.3
442,178 + +1.2
442,179 - +0.7
442,179 - -1.6
442,292 + -1.4
442,292 + -1.1
442,293 - +3.8
442,308 + -1.6
442,331 + -0.5
442,331 + -0.6
442,331 + -2.1
442,332 - -0.4
442,358 + +0.6
442,358 + +0.2
442,358 + -0.9
442,359 - +1.6
442,359 - +0.7
442,359 - -0.6
442,545 + -0.6
442,546 - -0.3
442,723 + -0.1
442,723 + -1.9
442,723 + -0.2
442,723 + +0.1
442,724 - -0.7
442,824 + Psyr_0411 0.12 +0.8
442,824 + Psyr_0411 0.12 -0.7
442,824 + Psyr_0411 0.12 +1.5
442,824 + Psyr_0411 0.12 -0.5
442,824 + Psyr_0411 0.12 -0.6
442,824 + Psyr_0411 0.12 -0.8
442,824 + Psyr_0411 0.12 -0.6
442,824 + Psyr_0411 0.12 +0.6
442,825 - Psyr_0411 0.12 +0.3
442,825 - Psyr_0411 0.12 +0.4
442,825 - Psyr_0411 0.12 -3.4
442,825 - Psyr_0411 0.12 -0.2
442,825 - Psyr_0411 0.12 +0.8
442,825 - Psyr_0411 0.12 -0.1
442,825 - Psyr_0411 0.12 +3.2
442,857 + Psyr_0411 0.13 +0.8
442,857 + Psyr_0411 0.13 -0.6
442,858 - Psyr_0411 0.13 -0.2
442,858 - Psyr_0411 0.13 +0.8
442,858 - Psyr_0411 0.13 +1.6
442,858 - Psyr_0411 0.13 -0.4
442,858 - Psyr_0411 0.13 +3.2
442,858 - Psyr_0411 0.13 -0.2
442,858 - Psyr_0411 0.13 -0.5
442,932 - Psyr_0411 0.14 -1.2
442,932 - Psyr_0411 0.14 -0.8

Or see this region's nucleotide sequence