Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0345 and Psyr_0346 overlap by 4 nucleotides Psyr_0346 and Psyr_0347 are separated by 59 nucleotides Psyr_0347 and Psyr_0348 are separated by 137 nucleotides
Psyr_0345: Psyr_0345 - Secretion protein HlyD, at 367,896 to 368,981
_0345
Psyr_0346: Psyr_0346 - Acriflavin resistance protein, at 368,978 to 372,079
_0346
Psyr_0347: Psyr_0347 - hypothetical protein, at 372,139 to 372,636
_0347
Psyr_0348: Psyr_0348 - conserved hypothetical protein, at 372,774 to 373,400
_0348
Position (kb) 368
369
370
371
372
373 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 368.128 kb on + strand, within Psyr_0345 at 368.129 kb on - strand, within Psyr_0345 at 368.534 kb on + strand, within Psyr_0345 at 368.566 kb on + strand, within Psyr_0345 at 368.566 kb on + strand, within Psyr_0345 at 368.567 kb on - strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.723 kb on - strand, within Psyr_0345 at 368.850 kb on - strand, within Psyr_0345 at 369.035 kb on + strand at 369.036 kb on - strand at 369.074 kb on + strand at 369.224 kb on + strand at 369.225 kb on - strand at 369.225 kb on - strand at 369.225 kb on - strand at 369.225 kb on - strand at 369.236 kb on + strand at 369.236 kb on + strand at 369.236 kb on + strand at 369.236 kb on + strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.239 kb on - strand at 369.269 kb on + strand at 369.269 kb on + strand at 369.269 kb on + strand at 369.270 kb on - strand at 369.270 kb on - strand at 369.315 kb on - strand, within Psyr_0346 at 369.405 kb on - strand, within Psyr_0346 at 369.416 kb on + strand, within Psyr_0346 at 369.416 kb on + strand, within Psyr_0346 at 369.416 kb on + strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.461 kb on + strand, within Psyr_0346 at 369.461 kb on + strand, within Psyr_0346 at 369.461 kb on + strand, within Psyr_0346 at 369.462 kb on - strand, within Psyr_0346 at 369.462 kb on - strand, within Psyr_0346 at 369.462 kb on - strand, within Psyr_0346 at 369.545 kb on + strand, within Psyr_0346 at 369.545 kb on + strand, within Psyr_0346 at 369.546 kb on - strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.907 kb on + strand, within Psyr_0346 at 369.908 kb on - strand, within Psyr_0346 at 370.092 kb on + strand, within Psyr_0346 at 370.121 kb on + strand, within Psyr_0346 at 370.121 kb on + strand, within Psyr_0346 at 370.121 kb on + strand, within Psyr_0346 at 370.262 kb on + strand, within Psyr_0346 at 370.262 kb on + strand, within Psyr_0346 at 370.262 kb on + strand, within Psyr_0346 at 370.262 kb on + strand at 370.263 kb on - strand, within Psyr_0346 at 370.263 kb on - strand, within Psyr_0346 at 370.268 kb on + strand, within Psyr_0346 at 370.268 kb on + strand, within Psyr_0346 at 370.269 kb on - strand, within Psyr_0346 at 370.361 kb on + strand, within Psyr_0346 at 370.361 kb on + strand, within Psyr_0346 at 370.361 kb on + strand, within Psyr_0346 at 370.362 kb on - strand, within Psyr_0346 at 370.362 kb on - strand, within Psyr_0346 at 370.497 kb on + strand, within Psyr_0346 at 370.497 kb on + strand, within Psyr_0346 at 370.498 kb on - strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.758 kb on - strand, within Psyr_0346 at 370.758 kb on - strand, within Psyr_0346 at 370.820 kb on + strand, within Psyr_0346 at 370.821 kb on - strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.923 kb on - strand, within Psyr_0346 at 371.052 kb on + strand, within Psyr_0346 at 371.053 kb on - strand, within Psyr_0346 at 371.053 kb on - strand, within Psyr_0346 at 371.053 kb on - strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.067 kb on - strand, within Psyr_0346 at 371.067 kb on - strand, within Psyr_0346 at 371.213 kb on + strand, within Psyr_0346 at 371.213 kb on + strand, within Psyr_0346 at 371.213 kb on + strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.490 kb on - strand, within Psyr_0346 at 371.780 kb on + strand at 371.780 kb on + strand at 371.781 kb on - strand at 371.781 kb on - strand at 371.781 kb on - strand at 371.781 kb on - strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.985 kb on - strand at 371.985 kb on - strand at 371.985 kb on - strand at 372.199 kb on + strand, within Psyr_0347 at 372.247 kb on - strand, within Psyr_0347 at 372.386 kb on + strand, within Psyr_0347 at 372.400 kb on + strand, within Psyr_0347 at 372.400 kb on + strand, within Psyr_0347 at 372.402 kb on + strand, within Psyr_0347 at 372.457 kb on - strand, within Psyr_0347 at 372.519 kb on + strand, within Psyr_0347 at 372.623 kb on + strand at 372.623 kb on + strand at 372.623 kb on + strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.681 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.708 kb on + strand at 372.708 kb on + strand at 372.708 kb on + strand at 372.709 kb on - strand at 372.709 kb on - strand at 372.749 kb on + strand at 372.749 kb on + strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.838 kb on + strand, within Psyr_0348 at 372.839 kb on - strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.905 kb on - strand, within Psyr_0348
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 368,128 + Psyr_0345 0.21 -0.5 368,129 - Psyr_0345 0.21 -0.6 368,534 + Psyr_0345 0.59 -0.2 368,566 + Psyr_0345 0.62 +0.2 368,566 + Psyr_0345 0.62 -1.1 368,567 - Psyr_0345 0.62 -2.1 368,654 + Psyr_0345 0.70 -0.2 368,654 + Psyr_0345 0.70 +0.1 368,654 + Psyr_0345 0.70 +0.0 368,655 - Psyr_0345 0.70 -0.2 368,655 - Psyr_0345 0.70 +0.9 368,655 - Psyr_0345 0.70 -1.8 368,723 - Psyr_0345 0.76 +2.2 368,850 - Psyr_0345 0.88 +0.3 369,035 + +0.1 369,036 - +0.2 369,074 + +1.1 369,224 + +0.8 369,225 - +0.1 369,225 - -0.4 369,225 - -0.2 369,225 - -1.6 369,236 + -0.2 369,236 + +0.1 369,236 + +0.4 369,236 + -1.3 369,237 - -0.8 369,237 - -1.3 369,237 - -2.2 369,237 - +0.7 369,237 - -0.4 369,237 - +0.4 369,237 - +0.2 369,239 - +0.4 369,269 + -0.7 369,269 + -0.7 369,269 + +0.7 369,270 - +0.8 369,270 - +1.2 369,315 - Psyr_0346 0.11 +0.9 369,405 - Psyr_0346 0.14 +2.1 369,416 + Psyr_0346 0.14 -1.7 369,416 + Psyr_0346 0.14 +0.4 369,416 + Psyr_0346 0.14 -1.0 369,417 - Psyr_0346 0.14 +0.7 369,417 - Psyr_0346 0.14 -1.3 369,417 - Psyr_0346 0.14 +0.2 369,417 - Psyr_0346 0.14 -0.4 369,461 + Psyr_0346 0.16 -0.4 369,461 + Psyr_0346 0.16 +1.1 369,461 + Psyr_0346 0.16 +0.3 369,462 - Psyr_0346 0.16 -0.4 369,462 - Psyr_0346 0.16 -0.5 369,462 - Psyr_0346 0.16 +1.1 369,545 + Psyr_0346 0.18 +0.7 369,545 + Psyr_0346 0.18 +0.7 369,546 - Psyr_0346 0.18 +0.9 369,898 + Psyr_0346 0.30 -0.2 369,898 + Psyr_0346 0.30 +0.1 369,898 + Psyr_0346 0.30 +0.1 369,898 + Psyr_0346 0.30 -0.4 369,899 - Psyr_0346 0.30 +0.6 369,899 - Psyr_0346 0.30 -1.0 369,899 - Psyr_0346 0.30 +0.6 369,899 - Psyr_0346 0.30 -1.0 369,899 - Psyr_0346 0.30 +0.7 369,907 + Psyr_0346 0.30 +0.8 369,908 - Psyr_0346 0.30 +0.9 370,092 + Psyr_0346 0.36 +1.1 370,121 + Psyr_0346 0.37 -1.1 370,121 + Psyr_0346 0.37 +1.4 370,121 + Psyr_0346 0.37 -1.0 370,262 + Psyr_0346 0.41 +2.6 370,262 + Psyr_0346 0.41 +0.7 370,262 + Psyr_0346 0.41 -0.1 370,262 + -1.3 370,263 - Psyr_0346 0.41 +0.5 370,263 - Psyr_0346 0.41 -3.3 370,268 + Psyr_0346 0.42 -0.0 370,268 + Psyr_0346 0.42 +1.5 370,269 - Psyr_0346 0.42 -0.1 370,361 + Psyr_0346 0.45 +0.2 370,361 + Psyr_0346 0.45 +0.2 370,361 + Psyr_0346 0.45 +1.1 370,362 - Psyr_0346 0.45 -0.2 370,362 - Psyr_0346 0.45 -0.1 370,497 + Psyr_0346 0.49 +0.0 370,497 + Psyr_0346 0.49 -2.6 370,498 - Psyr_0346 0.49 -2.3 370,757 + Psyr_0346 0.57 +0.4 370,757 + Psyr_0346 0.57 +1.2 370,757 + Psyr_0346 0.57 +0.9 370,757 + Psyr_0346 0.57 -1.2 370,758 - Psyr_0346 0.57 +2.0 370,758 - Psyr_0346 0.57 -0.3 370,820 + Psyr_0346 0.59 -0.4 370,821 - Psyr_0346 0.59 +0.0 370,922 + Psyr_0346 0.63 +0.9 370,922 + Psyr_0346 0.63 -0.3 370,922 + Psyr_0346 0.63 -1.9 370,922 + Psyr_0346 0.63 +1.0 370,922 + Psyr_0346 0.63 +0.7 370,922 + Psyr_0346 0.63 -0.3 370,923 - Psyr_0346 0.63 -1.3 371,052 + Psyr_0346 0.67 -0.4 371,053 - Psyr_0346 0.67 -0.6 371,053 - Psyr_0346 0.67 +0.3 371,053 - Psyr_0346 0.67 -0.1 371,066 + Psyr_0346 0.67 +0.2 371,066 + Psyr_0346 0.67 +1.3 371,066 + Psyr_0346 0.67 +0.8 371,066 + Psyr_0346 0.67 -0.8 371,066 + Psyr_0346 0.67 -0.0 371,067 - Psyr_0346 0.67 -0.2 371,067 - Psyr_0346 0.67 +1.1 371,213 + Psyr_0346 0.72 +1.1 371,213 + Psyr_0346 0.72 +0.3 371,213 + Psyr_0346 0.72 -1.0 371,214 - Psyr_0346 0.72 -1.0 371,214 - Psyr_0346 0.72 -0.9 371,214 - Psyr_0346 0.72 -4.0 371,214 - Psyr_0346 0.72 +0.3 371,214 - Psyr_0346 0.72 +0.9 371,214 - Psyr_0346 0.72 +0.2 371,214 - Psyr_0346 0.72 +3.8 371,490 - Psyr_0346 0.81 -1.3 371,780 + +3.1 371,780 + -0.3 371,781 - -0.7 371,781 - +0.4 371,781 - -0.0 371,781 - +0.2 371,984 + -0.3 371,984 + +0.6 371,984 + -0.9 371,984 + +0.7 371,984 + +1.4 371,984 + -0.7 371,985 - -0.4 371,985 - -0.1 371,985 - +0.7 372,199 + Psyr_0347 0.12 +1.4 372,247 - Psyr_0347 0.22 -0.8 372,386 + Psyr_0347 0.50 -1.6 372,400 + Psyr_0347 0.52 -0.7 372,400 + Psyr_0347 0.52 +0.1 372,402 + Psyr_0347 0.53 -1.4 372,457 - Psyr_0347 0.64 +0.8 372,519 + Psyr_0347 0.76 +0.2 372,623 + +1.2 372,623 + +0.5 372,623 + -1.8 372,624 - -0.1 372,624 - +0.8 372,624 - -0.3 372,624 - +1.2 372,624 - -1.2 372,624 - -1.0 372,624 - -0.4 372,624 - -0.7 372,624 - +0.2 372,624 - -1.5 372,624 - -0.4 372,624 - +0.9 372,624 - -0.0 372,624 - +0.7 372,624 - -0.4 372,681 + +0.1 372,689 + +1.6 372,689 + -1.4 372,689 + -0.8 372,689 + +0.2 372,689 + +0.1 372,689 + -0.3 372,689 + +1.4 372,689 + -1.1 372,689 + -0.5 372,690 - +0.7 372,690 - +1.0 372,690 - +1.7 372,690 - +0.9 372,708 + -1.0 372,708 + -0.3 372,708 + +0.2 372,709 - +1.1 372,709 - -1.3 372,749 + +0.7 372,749 + -0.7 372,750 - +0.6 372,750 - +1.1 372,750 - +1.2 372,750 - -1.1 372,838 + Psyr_0348 0.10 -0.1 372,839 - Psyr_0348 0.10 +0.7 372,841 + Psyr_0348 0.11 -0.1 372,841 + Psyr_0348 0.11 -1.2 372,841 + Psyr_0348 0.11 +1.7 372,841 + Psyr_0348 0.11 -0.6 372,842 - Psyr_0348 0.11 +0.3 372,842 - Psyr_0348 0.11 -0.0 372,842 - Psyr_0348 0.11 +0.7 372,842 - Psyr_0348 0.11 +0.1 372,905 - Psyr_0348 0.21 -0.8
Or see this region's nucleotide sequence