Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0087

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Dimethyl Sulfoxide 1.25 vol%
93,088	-		Psyr_0086	0.67	+0.3
93,088	-		Psyr_0086	0.67	+0.9
93,088	-		Psyr_0086	0.67	+0.4
93,214	-		Psyr_0086	0.73	-0.8
93,282	+		Psyr_0086	0.77	-0.6
93,282	+		Psyr_0086	0.77	-0.1
93,282	+		Psyr_0086	0.77	-1.5
93,282	+		Psyr_0086	0.77	-0.7
93,282	+		Psyr_0086	0.77	+0.7
93,282	+		Psyr_0086	0.77	+0.5
93,282	+		Psyr_0086	0.77	-0.9
93,282	+		Psyr_0086	0.77	-1.4
93,282	+		Psyr_0086	0.77	-0.6
93,282	+		Psyr_0086	0.77	-1.6
93,283	-		Psyr_0086	0.77	+1.0
93,283	-		Psyr_0086	0.77	+1.5
93,283	-		Psyr_0086	0.77	-0.1
93,283	-		Psyr_0086	0.77	-3.2
93,283	-		Psyr_0086	0.77	+0.2
93,283	-		Psyr_0086	0.77	-1.1
93,283	-		Psyr_0086	0.77	-0.0
93,392	+		Psyr_0086	0.82	+0.6
93,392	+		Psyr_0086	0.82	-0.1
93,392	+		Psyr_0086	0.82	+0.0
93,392	+		Psyr_0086	0.82	+0.1
93,392	+		Psyr_0086	0.82	-0.9
93,392	+		Psyr_0086	0.82	-0.3
93,392	+		Psyr_0086	0.82	-1.5
93,393	-		Psyr_0086	0.83	-0.4
93,393	-		Psyr_0086	0.83	-0.2
93,393	-		Psyr_0086	0.83	-0.7
93,480	+		Psyr_0086	0.87	-1.1
93,480	+		Psyr_0086	0.87	-0.3
93,480	+		Psyr_0086	0.87	+0.6
93,480	+		Psyr_0086	0.87	+1.0
93,480	+		Psyr_0086	0.87	+0.1
93,481	-		Psyr_0086	0.87	+1.4
93,481	-		Psyr_0086	0.87	-0.2
93,481	-		Psyr_0086	0.87	-0.5
93,481	-		Psyr_0086	0.87	+1.1
93,548	-				+0.3
93,677	+				-1.5
93,677	+				+0.4
93,678	-				-1.0
93,678	-				-0.1
93,678	-				+1.5
93,684	+				-0.2
93,727	+				-0.1
93,728	-				+2.4
93,728	-				-1.7
93,758	+				-0.7
93,759	-				+0.5
93,759	-				-1.0
93,760	+				+0.4
93,760	+				-2.1
93,760	+				+0.9
93,760	+				+0.9
93,761	-				-0.6
93,761	-				-0.5
93,786	+				+0.1
93,786	+				+0.3
93,786	+				+0.2
93,786	+				-0.4
93,786	+				+0.8
93,786	+				+0.2
93,786	+				-1.5
93,786	+				+0.4
93,787	-				-0.1
93,787	-				-0.0
93,787	-				-1.6
93,787	-				-1.2
93,787	-				-1.3
93,787	-				-0.0
93,787	-				-0.2
93,787	-				+1.5
93,787	-				+0.2
93,787	-				+0.2
93,787	-				-0.2
93,787	-				-1.1
93,826	+				+0.7
93,827	-				-0.8
93,827	-				-0.1
93,861	+				-1.6
93,879	+				-1.3
93,879	+				-0.0
93,879	+				-0.2
93,879	+				-0.4
93,879	+				-0.5
93,879	+				-0.6
93,879	+				-0.4
93,879	+				+0.0
93,879	+				-2.6
93,880	-				+0.4
93,880	-				+0.0
93,880	-				+0.7
93,880	-				+1.1
93,880	-				-0.3
93,880	-				+0.8
93,886	+				-0.6
93,886	+				+3.4
93,886	+				+0.1
93,886	+				-0.8
93,887	-				+1.9
93,887	-				-0.1
93,887	-				-1.8
93,887	-				+0.0
93,920	+				+0.8
93,920	+				-0.2
93,921	-				-1.9
93,921	-				-0.3
93,948	+				-2.0
93,949	-				+1.4
93,949	-				+2.9
93,949	-				-0.8
93,949	-				-0.1
93,949	-				+0.5
93,949	-				-0.2
93,949	-				-2.5
93,949	-				-1.6
93,949	-				+0.4
93,950	+				+0.3
93,950	+				-2.9
93,950	+				-0.8
93,951	-				+1.2
93,951	-				-0.3
93,951	-				+1.4
93,951	-				-1.5
93,951	-				-1.0
93,951	-				+2.4
93,951	-				-0.3
93,973	+				+0.1
93,973	+				-0.9
93,974	-				-1.6
93,974	-				+1.8
94,221	+		Psyr_0087	0.29	+3.4
94,222	-		Psyr_0087	0.29	-1.8
94,222	-		Psyr_0087	0.29	+0.7
94,225	+		Psyr_0087	0.29	+1.9
94,226	-		Psyr_0087	0.29	+0.3
94,226	-		Psyr_0087	0.29	-0.1
94,267	+		Psyr_0087	0.33	-0.6
94,267	+		Psyr_0087	0.33	-0.6
94,513	+		Psyr_0087	0.53	-0.2
94,514	-		Psyr_0087	0.54	-0.3
94,623	+		Psyr_0087	0.63	+0.9
94,623	+		Psyr_0087	0.63	+0.5
94,849	-		Psyr_0087	0.82	-0.9
94,891	+		Psyr_0087	0.85	-0.3
94,891	+		Psyr_0087	0.85	-1.5
94,892	-		Psyr_0087	0.85	+0.7
95,039	-				-1.6
95,110	+				+0.1
95,125	+				-1.3
95,193	+				-0.5
95,242	-				-0.1
95,392	+		Psyr_0088	0.21	-1.5
95,392	+		Psyr_0088	0.21	-0.4
95,392	+		Psyr_0088	0.21	-1.2
95,392	+		Psyr_0088	0.21	+0.4
95,392	+		Psyr_0088	0.21	-0.1
95,392	+		Psyr_0088	0.21	+0.2
95,392	+		Psyr_0088	0.21	-1.2
95,392	+		Psyr_0088	0.21	+0.5
95,392	+		Psyr_0088	0.21	-2.4
95,392	+		Psyr_0088	0.21	-0.2
95,392	+		Psyr_0088	0.21	+1.6
95,392	+		Psyr_0088	0.21	-0.6
95,392	+		Psyr_0088	0.21	+0.1
95,393	-		Psyr_0088	0.21	-0.4
95,393	-		Psyr_0088	0.21	+0.8
95,393	-		Psyr_0088	0.21	-0.1
95,393	-		Psyr_0088	0.21	-0.1
95,393	-		Psyr_0088	0.21	-1.2
95,393	-		Psyr_0088	0.21	-2.3
95,393	-		Psyr_0088	0.21	-0.9
95,393	-		Psyr_0088	0.21	-0.4
95,393	-		Psyr_0088	0.21	-1.0
95,407	+		Psyr_0088	0.22	+0.4
95,452	+		Psyr_0088	0.26	-0.8
95,453	-		Psyr_0088	0.27	+0.8
95,453	-		Psyr_0088	0.27	+2.2
95,494	+		Psyr_0088	0.31	-1.4
95,495	-		Psyr_0088	0.31	-0.7
95,852	-		Psyr_0088	0.66	-1.1
95,852	-		Psyr_0088	0.66	+0.4
95,964	-		Psyr_0088	0.77	+0.3